TCONS_00060431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060431
Unique NameTCONS_00060431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060431 ID=TCONS_00060431|Name=TCONS_00060431|organism=Clytia hemisphaerica|type=transcript|length=1994bp
GACCGCCCGTGTAgcgagaaaaaagggaaaagtgATATCCAAAAGCTTat
ttggaagaatttttttaGGAAGCTGCATCTTGATTTGGATTTCAACTTTG
CTTGGTTTAGTTTGGCCTTGGTACCTGTCAAAATCaaagttatcattttt
aagTTCCTGGCAATCCACCATTTACATTGcatatcatttttttaaatcat
cattGAAAGCCACAATTGAATCAATACCATGTCATCAAGAGCATTACGTT
CCAAAgctaaaatcaaagtcattccTACTCGAAGTTATTCTGCATCATTG
CGAGGCTCTAAACAAAGAGAGCCTTTCCTATCATTAGATTCGTCAAAGAA
AACCACACCAAACAAAGAGAAAACAACTCGTGGAACAAGAGGACGTCCAC
CTAAGAAGCAAGTACCAAGTCCAAAAGCTGAGAAGGATAAATCCAGCAAT
GAGCAAGATGATACAATCACTGAAGCTGAAAATATTGACTTCCAGGTCAT
TAAGAAAGAGCCAGACGTCAAAGAGGAACCTCAGAGTAAAGTTGTTGATA
ATGAATCAAATAATGTACAAGAAGTTACacagagaaatcatgaaaacgAG
GACTCAAATCAAGATGAAAACCATACTCATGAGGGGACAGTGAGTGAAGA
ACAAGCTCACGAGGGGACAGTGAGTGAAGAACAAGCTCACGAGGGGACAG
TGAATGAAGAAGAACCTTCGAAAAGCTCTCCCAAAGAATTGACTATAGTG
CCACCATTAAAAAGGAAAAGAGGGCGACCTAGAAAAACTGAATTCTTGCA
AACTGACACTGTTGAGAATATTGCCAAGAAACTTAAGACCGAACGGGATC
CAACTCCACCAGTTGTTATAAAAGAAGAACAGAAGCCCATATCTCCTGAA
CCGCCAAGAAGAAAACCTCGTATGGCCAGTCTGAATGCGTTGGCTAAAGT
CAATGCAGTTCTGGACATTTATCGatttgaaaagttgaaagacaTTATAG
ATGAGCAGTCTTCCTATGTTGATACTGTTgatattaaaaaagaaaaagaa
atgaaatctaataataaaaaacaagagAAAACTGATAAAATTGATGTGAA
GATTGAAAGTAAGACTGTATGTGAAACACGTGAAATGAAAGCTGAGGAGG
TGACAGTTATTGAAGATGAGGAGGAGGAGGATGAAGAAGTGTTTGTGTGT
CCTTCACCAGATCCTCCAACTCCACCGCCAGAAATGATCACACAGTCCAT
ACAAACTGAAAATATCCATCATTGTAAAAGTGTCCAGACTGAGAGAGTCA
TATTTGTGGATGACCATTCTACAGTGAAGACTCTATGCACGTGTTACGCT
AGCAATAAGAAGAATGAACTTAAACATCAGCAtgtcaaaacaaactttac
TGAATCTGGGTTTCCAATACACATTAGATCCACTGTTTTAGCTCATACAC
CGTCATATACGGTAGCTTTACCCATAGTGAAAACACACAAATGTCCAAAA
ACTGAAAACACACACAATCTAACCAACATAGGAGGTATTACTGCAAACGT
AACATCAATGTTGGATAGATGTATTTCTAGGACCCTATTTCAACATAATT
ACTACCCAGAATGCACAAAACTTGCACAAATGTCAGCTCAAAAAGAAGcc
attgaaaagaaaaagagactTGCGGAATTAGCCCAACAGCGGAtcgatca
aaagaaaaatgcgCAGAGGCTAGTTATACCATCCCTTCACTGTGAACCAA
TTTCAATATCCATACCAACTTCTGACAATTACCAAAAGGACATTACTAAT
AAGCAAGTCGCAAAGAAAAGTTACAAAAAGAAGACTAAAGAAAAAGCTCA
GGTGCAAGAGCCAGTCAAAAAGCAGgaaaGTATTGATACGGATGAAAAAG
CAGATGATCACGGTTGGCGGTTTGAAGGAGCACACAGAGAAGAAAATACC
AATGTGGTAATGACAAAATATCAAAgtgttttattgaaattcag
Run BLAST on NCBI

protein sequence of TCONS_00060431-protein

>TCONS_00060431-protein ID=TCONS_00060431-protein|Name=TCONS_00060431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=588bp
MSSRALRSKAKIKVIPTRSYSASLRGSKQREPFLSLDSSKKTTPNKEKTT
RGTRGRPPKKQVPSPKAEKDKSSNEQDDTITEAENIDFQVIKKEPDVKEE
PQSKVVDNESNNVQEVTQRNHENEDSNQDENHTHEGTVSEEQAHEGTVSE
EQAHEGTVNEEEPSKSSPKELTIVPPLKRKRGRPRKTEFLQTDTVENIAK
KLKTERDPTPPVVIKEEQKPISPEPPRRKPRMASLNALAKVNAVLDIYRF
EKLKDIIDEQSSYVDTVDIKKEKEMKSNNKKQEKTDKIDVKIESKTVCET
REMKAEEVTVIEDEEEEDEEVFVCPSPDPPTPPPEMITQSIQTENIHHCK
SVQTERVIFVDDHSTVKTLCTCYASNKKNELKHQHVKTNFTESGFPIHIR
STVLAHTPSYTVALPIVKTHKCPKTENTHNLTNIGGITANVTSMLDRCIS
RTLFQHNYYPECTKLAQMSAQKEAIEKKKRLAELAQQRIDQKKNAQRLVI
PSLHCEPISISIPTSDNYQKDITNKQVAKKSYKKKTKEKAQVQEPVKKQE
SIDTDEKADDHGWRFEGAHREENTNVVMTKYQSVLLKF
Run BLAST on NCBI

transcript from alignment at scaffold_341:436988..446608-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060431 ID=TCONS_00060431|Name=TCONS_00060431|organism=Clytia hemisphaerica|type=transcript|length=9621bp|location=Sequence derived from alignment at scaffold_341:436988..446608- (Clytia hemisphaerica)
GACCGCCCGTGTAGCGAGAAAAAAGGGAAAAGTGATATCCAAAAGCTTAT
TTGGAAGAATTTTTTTAGGAAGCTGCATCTTGATTTGGATTTCAACTTTG
CTTGGTTTAGTTTGGCCTTGGTACCTGTCAAAATCAAAGTTATCATTTTT
AAGTTCCTGGCAATCCACCATTTACATTGCATATCATTTTTTTAAATCAT
CATTGAAAGGTTTGTTGCTGTTTTGGTTTATACTCTCCTAAATTCTGATA
CATTAAACTTTTTTAAGTTAAAGGAAGAAATTTTGTCGGAAAGAAAATTT
GGCGGTTTTTTGGCCAACCATAATCCGCCAAATTAAGTTCCTGCCAAATT
AAATTTTTCCCGCCATCTGCCAAATCAAATTCCCGCCAAATTAAAATTTT
CTCAAATAAAAGGGGCTATTTTTGAACATTTTCATCTTAATTTTAATCCT
TGTCCTTCAGTCCTCCTCTCCTTGAATTCACCTTTCCCGTAATTCATAAA
ACTAATACGCGCATTATTTTGATGCTCTCCACCTTTTGGTCTCTGGAAAC
AGTAAAACAATGTGAATAATTTCTTGATTATCGTCAAGCTTGTATTGATT
GTCGAGATGCTAAAAAAGTCAAGGACGTACCTTTGTCGCATAACGACCCA
CGGCATGGCCCAAACATGTTCGGGCCTGTTCGGACAATGCTCGGGCCACA
AAAATGTATTATTGAATCGGCCTGAACATTTTGTTTGGACCATGTTCGGG
TCAAAATACCCAACAAACAAGTCTAGCTATCATGTCTTTAAAGGAACATT
ATAGGAATAGTAGAATTTAATTTTATTTACCTTTCCTGGTTTATCATCAT
CCATTGTTAAATATTTTCATTAGACAAAATCAAAGTTCCAAATACCAGTT
TGATTCACAAAGTTGTATAACAGTACAAAAAACGATCCAGAAAAATTCTG
CTTCGAATAGGAGAAGACCATGATAGGGTGTAAACTGGATTTTGAATTTT
AGAGTTTCAAAATTGTCACAATTTTTTATCAAAATTTATTATATTGTAAG
ACTTTTCGCGCAATTTTGAGGTCCATAAGTCAAAAATCCACTGTTTGCCC
CAGGGGTATCTGATTCGCGGTAGTAGCAAAAAACAGCAAAAATGGCATTT
TTTGTCCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCAGGAAATGGTCAAAATGGTTTCTAAATGGTGTCTTGTACTAAT
ATTCAACATAAAAAGACAAAATAACCCCAGCGAGATCGCTCAATGTTTTA
ATTTCAGGCTAAAAAGGCCGATTTTCTCGGATTCTGGGTAGCAAAATGCA
TGAAAGCAGCATTTTTGAGGACCCACAACTTTTAAACTTTTTAAGGTACA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGCCAATATTTCAAGCTAAAACTTGGTTTTCTCTGGCTAAAATCTCAAAA
ATGGTTTCAAATGGTGTCCTGAAATCTTTGGGTGTTGAAAGTATTCAGGA
AATACTCTGCGAGAATCAAAATGGTTTGGGTTAGAAATTTGCCAAAGTCC
GCCATATGGAATTGCATTTCCACTTAAAAACGCGATATTTAGAGTTAAAC
TCTAATTTTCTCAGACTAAAATCTCGAGAATGGTTTCAAATGGTGTTCTG
AAATCTTTTGGTGTTGAAAGTATTCTGAAAATACTCTGGGAGAATCAAAA
TGGTTTGGGTCAGAAATTTGCCCAAGTCTGCCATTATGGTATTGCATTTC
CCACTAAAACGCAATATTTAGAGTTAAAGTCTGTTTTTCTCAGGCTAAAA
TCTCAAAAATGGTTTCAAATAGGGTCCTGAAATCTTTTGCTGTTGAAAGT
ATTCTGGGAACACTCAAGGAAAATCACAGTGATTCACAATGGTCATATAT
ATGCCAAAGTCTGCCATTATGAATTTCATTTCTTTAGGAAGAACACTCAA
GCTTACTCAAAACATTGTGTTTTAGAATGAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTGTTTTAGAATGAAATACAATTCCAT
AATGGCAGACTTTGGCAAATTTCTGACCAAAACCATTTTGGTTTTCCCAT
AGTATTTCCAGAATACTTTCAACAGCAAAAGATTTCAGGACCCTATTTGA
AACCACTTTTGAGATTTTGGCCTGAGAAAATTAGAGTTTAGCTCTAAATA
TTGCGTTTTAGTGGGAAATTCAATTCCATAATGGCGAACTTTGGCAAATT
TCTAACCCGAACCATTTTGGTTCTCCCAGAGTATATCCAGAATACTATAA
ACACCAAAAGATTTCAGGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGGACCCTATCTGAAACCATTTTTGAGATTCTAGCCTGAGAAAATTAGA
CTTTAACTCTAAAAATCGCATTTTAGTGGGAAATGCAATACAATAATGGC
ACACTTAGGCAAATTTCTGACCCAAACCATTTTGGTTCTCCCAGAGTATT
TTCAGAATACTTCCAAGATTCAAAGATTTCAGAACACCATTTGAAATCAT
TTTTTAGATTTTAGCCCAAGAAAACCAAGTTTTAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAATTGCGCAAGAAGTCTT
ACAATATGATAAATTTTGATAAAAAATTGTGACAATTTTGAAAATCCAAA
AAAAGTATTTTTTCATGGTTCCAGTTTACACCCTAACCATGAGAAAAGGG
AACGGGATAAAGAATAAAAAGAAGACCGTCTCATGGCATGGACCAGGGGT
TTAGACCATATTATGTAAGATTCAAATGAGTCTGCTAAATTGCGTGGGTT
GCGTGGGGGCATGGGTCAATATTTTTGCGTGGGTTAATATTTTTCGCGTG
GGTCATATTTTTTGCGTGGGTCATTATTTTTTGCGTGGGTCAAAGTTTTC
AAGTTTTTAACTTATTTTCACTAGCCTTAAATTTTTCGCCGATCGTCGTG
ATTATCCTGGATTACCTCAGTGCTCAGTATTATTTGCAACACAAACAGAG
TGGAGGAACGTAAATTGCGCGTAACCCCTTTTTCTAAACTCGGCCTCATT
TGCATCAATGCAGGATCTTACTACAGATTATTTTAGAACTTTCCATGTTA
TTACAGTAAGCCAAAAATGAAATTGAGAAAAACACTTTTTAAAATCCCAA
AAACCTTTTCCTCAAATGTAGTAATAATTTTACAATTTTCAAACACCTTG
ACAACTTTGCCTTTATAAGAACATCACATTTTTGCTGACTCAACATTTAA
TGGTTGAAAAAATTGCTGTTTTAGGCAATAATTACCGTTTTTATGTTAAA
TACCCAACCGTCAATGTTTTTGACTTTGTGGCAAAAAGGCAGGTCTGTTA
TAGAATTGCAGAATTTCATTTCATTCAGACGCATGTAATCGTTAAGACCT
TGCCGTACCCTTAATATACTAGGCAGTACTAGGACATAACATCATTATAA
TATCTTTTTAACATTCAATTCACATACAAAAGCTTCCAGAGGCTCCTCAA
TAATGGAAAATGCCCTTCAGCAAATTTTTATTCTTAAAAGCAGCCATAAA
TTTAAAAATTTACCGCTTTCTTAGAAAAATTTGCACAGTTGCTTTGTTTC
TTAATGTTATTAATTAATTCTTTGTTTCCAATTAACTTGGTGCTACTCAT
TAAAAGACGCCGGAATTGGACTATTGTGTAGGGATCGCAGCGTAAAGAAC
AGGTCTACTAAAACAAACTACTCTACACTCCCAGTCTACTTGTTGATTAA
ATATTTCTATCGCAAATAAATTATGTTAGACAGTAGAAGTAATTCTAAAT
AAAAAAGACTTCTAAAACAACTAACTAACTTTGTTGCTGAGAAAAAACAA
AATTGATGTTTTAAATTTTTTTTATTTTCTTTTTTAAAATTAGAAATCGG
AGAAAATAATAAAATAAAATTTTATGAAATTTGCTAAGTATCGATTTTTT
AATTAAGTCTCTCTTAAACAACTCTTCTTTTTAGCACATATGCAGGAAAA
ATGTACTCTTGGAGTTGTTTTTTGTGGATAGGGAAATCCCATGAGCGTCC
AAGCAAATAAAACTGCTATTTGGCTTATAAATTTAAACCAATTTGTAACC
AGTTGCATAATCATGAAATACCATTTCCTAATCAATAATGTTCTCAATGT
TTTGTTATGATTTCATTTCAGCCACAATTGAATCAATACCATGTCATCAA
GAGCATTACGTTCCAAAGCTAAAATCAAAGTCATTCCTACTCGAAGTTAT
TCTGCATCATTGCGAGGCTCTAAACAAAGAGAGCCTTTCCTATCATTAGA
TTCGTCAAAGAAAACCACACCAAACAAAGAGAAAACAACTCGTGGAACAA
GAGGACGTCCACCTAAGAAGCAAGTACCAAGTCCAAAAGCTGAGAAGGAT
AAATCCAGCAATGAGCAAGATGATACAATCACTGAAGCTGAAAATATTGA
CTTCCAGGTCATTAAGAAAGAGCCAGACGTCAAAGAGGAACCTCAGAGTA
AAGTTGTTGATAATGAATCAAATAATGTACAAGAAGTTACACAGAGAAAT
CATGAAAACGAGGACTCAAATCAAGATGAAAACCATACTCATGAGGGGAC
AGTGAGTGAAGAACAAGCTCACGAGGGGACAGTGAGTGAAGAACAAGCTC
ACGAGGGGACAGTGAATGAAGAAGAACCTTCGAAAAGCTCTCCCAAAGAA
TTGACTATAGTGCCACCATTAAAAAGGAAAAGAGGGCGACCTAGAAAAAC
TGAATTCTTGCAAACTGACACTGTTGAGAATATTGCCAAGAAACTTAAGA
CCGAACGGGATCCAACTCCACCAGTTGTTATAAAAGAAGAACAGAAGCCC
ATATCTCCTGAACCGCCAAGAAGAAAACCTCGTATGGCCAGTCTGAATGC
GTTGGCTAAAGTCAATGCAGTTCTGGACATTTATCGATTTGAAAAGTTGA
AAGACATTATAGATGAGCAGTCTTCCTATGTTGATACTGTTGATATTAAA
AAAGAAAAAGAAATGAAATCTAATAATAAAAAACAAGAGAAAACTGATAA
AATTGATGTGAAGATTGAAAGTAAGACTGTATGTGAAACACGTGAAATGA
AAGCTGAGGAGGTGACAGTTATTGAAGATGAGGAGGAGGAGGATGAAGAA
GTGTTTGTGTGTCCTTCACCAGATCCTCCAACTCCACCGCCAGAAATGAT
CACACAGTCCATACAAACTGAAAATATCCATCATTGTAAAAGTGTCCAGA
CTGAGAGAGTCATATTTGTGGATGACCATTCTACAGTGAAGACTCTATGC
ACGTGTTACGCTAGCAATAAGAAGAATGAACTTAAACATCAGCATGTCAA
AACAAACTTTACTGAATCTGGGTTTCCAATACACATTAGATCCACTGTTT
TAGCTCATACACCGTCATATACGGTAGCTTTACCCATAGTGAAAACACAC
AAATGTCCAAAAACTGAAAACACACACAATCTAACCAACATAGGAGGTAT
TACTGCAAACGTAACATCAATGTTGGATAGATGTATTTCTAGGACCCTAT
TTCAACATAATTACTACCCAGAATGCACAAAACTTGCACAAATGTCAGCT
CAAAAAGAAGCCATTGAAAAGAAAAAGAGACTTGCGGAATTAGCCCAACA
GCGGATCGATCAAAAGAAAAATGCGCAGAGGCTAGTTATACCATCCCTTC
ACTGTGAACCAATTTCAATATCCATACCAACTTCTGACAATTACCAAAAG
GACATTACTAATAAGCAAGTCGCAAAGAAAAGTTACAAAAAGAAGACTAA
AGAAAAAGCTCAGGTGCAAGAGCCAGTCAAAAAGCAGGTAAGATTTTTAA
TAGGCTGCGCGCATTCCCTCTCATATATTTTGATATAGGGAATGCTACTC
GTGTTTAAAATTCTTGTCTGAGAGTTACCCCAAATTTAGGGTAGCCTGTT
TGAATTTTCTTCAAAAGGTTTAGAAATCCAATGGTTGTATTTTAACCTCT
AGCCATTCAGATTTAATGAAGTTAAAAAAAAAATCACATAAAGATCTTAC
TAATCAAGCTAATCAAGTTTCTAAAACTGAAAAACAGAACGGGGGTAATT
CTCGAACGGAAATTTTATGTACATTGCTATAACATTACATAGCGTCAGCC
CCCCTGCTGGTTGGGGGGGGGGGCTACACCCTAAAATTTTCCCGAAAAAG
AAGGGGGCTGGAAGTACACCACTTTTTTGGGGGACCTATGTACTTGGGGG
GGAGCTAAAGTAACGTGGGGGCTAAAGTAATTCAGCTTAATAGTTGGCTT
CAATTACTCAAATTGAAGCTCATGAATCTGAAAAATTTTCGCCTGCGGCG
CAATATGTTTATAGATAGTGTCCAAAATATTTTATCTTAAACTTATCATA
AACGCAATTTACATTGGGAAAACTTTTTTTACTGGGATCAATTTATTGAA
AGTGTCAAAAGACCTGGGGGTTAACAAAAGATTCATAAATCTTTAGGGGG
ACTTAAAAATCAGGGGTGACCTAATTTTTGCCTGGGACCTAAACCCAGGC
TGACGCTATGCAATACATTCCTATACAGTATCAAATCATATTAGAGCTAG
ATTTTTGAAGTCAAGAGTATTCGTTTTGAGTGTGAACTGAACCTTTTTGA
TTACCTTTGTTTACTGAAAGATATTCTCCATCGCACTGTTCATATTACAT
CTTTTTAAAAGTATAAAGCCTTTAAATCAACACGTTGTAGTCTCTTAAAA
TATTCTTTTTACAAATCACTTATTCTTTAAACAGTTCATTTTTCATCCCT
GCCCATACAGGTTTAAAATATTGGTACCATTGGTTGTTTCAAGTGATAGA
TTAATTTGTAGTGCTCTTTTAACGATAGTAGACGGTCATTCATTTTTTTC
AGGAAAGTATTGATACGGATGAAAAAGCAGATGATCACGGTTGGCGGTTT
GAAGGAGCACACAGAGAAGAAAATACCAATGTGGTAATGACAAAATATCA
AAGTGTTTTATTGAAATTCAG

Coding sequence (CDS) from alignment at scaffold_341:436988..446608-

>TCONS_00060431 ID=TCONS_00060431|Name=TCONS_00060431|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_341:436988..446608- (Clytia hemisphaerica)
GAAAGTATTGATACGGATGAAAAAGCAGATGATCACGGTTGGCGGTTTGA
AGGAGCACACAGAGAAGAAAATACCAATGTGGTAATGACAAAATATCAAA
GTGTTTTATTGAAATTCATGTCATCAAGAGCATTACGTTCCAAAGCTAAA
ATCAAAGTCATTCCTACTCGAAGTTATTCTGCATCATTGCGAGGCTCTAA
ACAAAGAGAGCCTTTCCTATCATTAGATTCGTCAAAGAAAACCACACCAA
ACAAAGAGAAAACAACTCGTGGAACAAGAGGACGTCCACCTAAGAAGCAA
GTACCAAGTCCAAAAGCTGAGAAGGATAAATCCAGCAATGAGCAAGATGA
TACAATCACTGAAGCTGAAAATATTGACTTCCAGGTCATTAAGAAAGAGC
CAGACGTCAAAGAGGAACCTCAGAGTAAAGTTGTTGATAATGAATCAAAT
AATGTACAAGAAGTTACACAGAGAAATCATGAAAACGAGGACTCAAATCA
AGATGAAAACCATACTCATGAGGGGACAGTGAGTGAAGAACAAGCTCACG
AGGGGACAGTGAGTGAAGAACAAGCTCACGAGGGGACAGTGAATGAAGAA
GAACCTTCGAAAAGCTCTCCCAAAGAATTGACTATAGTGCCACCATTAAA
AAGGAAAAGAGGGCGACCTAGAAAAACTGAATTCTTGCAAACTGACACTG
TTGAGAATATTGCCAAGAAACTTAAGACCGAACGGGATCCAACTCCACCA
GTTGTTATAAAAGAAGAACAGAAGCCCATATCTCCTGAACCGCCAAGAAG
AAAACCTCGTATGGCCAGTCTGAATGCGTTGGCTAAAGTCAATGCAGTTC
TGGACATTTATCGATTTGAAAAGTTGAAAGACATTATAGATGAGCAGTCT
TCCTATGTTGATACTGTTGATATTAAAAAAGAAAAAGAAATGAAATCTAA
TAATAAAAAACAAGAGAAAACTGATAAAATTGATGTGAAGATTGAAAGTA
AGACTGTATGTGAAACACGTGAAATGAAAGCTGAGGAGGTGACAGTTATT
GAAGATGAGGAGGAGGAGGATGAAGAAGTGTTTGTGTGTCCTTCACCAGA
TCCTCCAACTCCACCGCCAGAAATGATCACACAGTCCATACAAACTGAAA
ATATCCATCATTGTAAAAGTGTCCAGACTGAGAGAGTCATATTTGTGGAT
GACCATTCTACAGTGAAGACTCTATGCACGTGTTACGCTAGCAATAAGAA
GAATGAACTTAAACATCAGCATGTCAAAACAAACTTTACTGAATCTGGGT
TTCCAATACACATTAGATCCACTGTTTTAGCTCATACACCGTCATATACG
GTAGCTTTACCCATAGTGAAAACACACAAATGTCCAAAAACTGAAAACAC
ACACAATCTAACCAACATAGGAGGTATTACTGCAAACGTAACATCAATGT
TGGATAGATGTATTTCTAGGACCCTATTTCAACATAATTACTACCCAGAA
TGCACAAAACTTGCACAAATGTCAGCTCAAAAAGAAGCCATTGAAAAGAA
AAAGAGACTTGCGGAATTAGCCCAACAGCGGATCGATCAAAAGAAAAATG
CGCAGAGGCTAGTTATACCATCCCTTCACTGTGAACCAATTTCAATATCC
ATACCAACTTCTGACAATTACCAAAAGGACATTACTAATAAGCAAGTCGC
AAAGAAAAGTTACAAAAAGAAGACTAAAGAAAAAGCTCAGGTGCAAGAGC
CAGTCAAAAAGCAGGAAAGTATTGATACGGATGAAAAAGCAGATGATCAC
GGTTGGCGGTTTGAAGGAGCACACAGAGAAGAAAATACCAATGTGGTAAT
GACAAAATATCAAAGTGTTTTATTGAAATTCATGTCATCAAGAGCATTAC
GTTCCAAAGCTAAAATCAAAGTCATTCCTACTCGAAGTTATTCTGCATCA
TTGCGAGGCTCTAAACAAAGAGAGCCTTTCCTATCATTAGATTCGTCAAA
GAAAACCACACCAAACAAAGAGAAAACAACTCGTGGAACAAGAGGACGTC
CACCTAAGAAGCAAGTACCAAGTCCAAAAGCTGAGAAGGATAAATCCAGC
AATGAGCAAGATGATACAATCACTGAAGCTGAAAATATTGACTTCCAGGT
CATTAAGAAAGAGCCAGACGTCAAAGAGGAACCTCAGAGTAAAGTTGTTG
ATAATGAATCAAATAATGTACAAGAAGTTACACAGAGAAATCATGAAAAC
GAGGACTCAAATCAAGATGAAAACCATACTCATGAGGGGACAGTGAGTGA
AGAACAAGCTCACGAGGGGACAGTGAGTGAAGAACAAGCTCACGAGGGGA
CAGTGAATGAAGAAGAACCTTCGAAAAGCTCTCCCAAAGAATTGACTATA
GTGCCACCATTAAAAAGGAAAAGAGGGCGACCTAGAAAAACTGAATTCTT
GCAAACTGACACTGTTGAGAATATTGCCAAGAAACTTAAGACCGAACGGG
ATCCAACTCCACCAGTTGTTATAAAAGAAGAACAGAAGCCCATATCTCCT
GAACCGCCAAGAAGAAAACCTCGTATGGCCAGTCTGAATGCGTTGGCTAA
AGTCAATGCAGTTCTGGACATTTATCGATTTGAAAAGTTGAAAGACATTA
TAGATGAGCAGTCTTCCTATGTTGATACTGTTGATATTAAAAAAGAAAAA
GAAATGAAATCTAATAATAAAAAACAAGAGAAAACTGATAAAATTGATGT
GAAGATTGAAAGTAAGACTGTATGTGAAACACGTGAAATGAAAGCTGAGG
AGGTGACAGTTATTGAAGATGAGGAGGAGGAGGATGAAGAAGTGTTTGTG
TGTCCTTCACCAGATCCTCCAACTCCACCGCCAGAAATGATCACACAGTC
CATACAAACTGAAAATATCCATCATTGTAAAAGTGTCCAGACTGAGAGAG
TCATATTTGTGGATGACCATTCTACAGTGAAGACTCTATGCACGTGTTAC
GCTAGCAATAAGAAGAATGAACTTAAACATCAGCATGTCAAAACAAACTT
TACTGAATCTGGGTTTCCAATACACATTAGATCCACTGTTTTAGCTCATA
CACCGTCATATACGGTAGCTTTACCCATAGTGAAAACACACAAATGTCCA
AAAACTGAAAACACACACAATCTAACCAACATAGGAGGTATTACTGCAAA
CGTAACATCAATGTTGGATAGATGTATTTCTAGGACCCTATTTCAACATA
ATTACTACCCAGAATGCACAAAACTTGCACAAATGTCAGCTCAAAAAGAA
GCCATTGAAAAGAAAAAGAGACTTGCGGAATTAGCCCAACAGCGGATCGA
TCAAAAGAAAAATGCGCAGAGGCTAGTTATACCATCCCTTCACTGTGAAC
CAATTTCAATATCCATACCAACTTCTGACAATTACCAAAAGGACATTACT
AATAAGCAAGTCGCAAAGAAAAGTTACAAAAAGAAGACTAAAGAAAAAGC
TCAGGTGCAAGAGCCAGTCAAAAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038003XLOC_038003Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060431-proteinTCONS_00060431-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060431-exon-scaffold_341-1575043694:446400..446608TCONS_00060431-exon-scaffold_341-1575043694:446400..446608Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1575043694:438172..439837TCONS_00060431-exon-scaffold_341-1575043694:438172..439837Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1575043694:436988..437106TCONS_00060431-exon-scaffold_341-1575043694:436988..437106Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1510915933:446400..446608TCONS_00060431-exon-scaffold_341-1510915933:446400..446608Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1510915933:438172..439837TCONS_00060431-exon-scaffold_341-1510915933:438172..439837Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1510915933:436988..437106TCONS_00060431-exon-scaffold_341-1510915933:436988..437106Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1491911889:446400..446608TCONS_00060431-exon-scaffold_341-1491911889:446400..446608Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1491911889:438172..439837TCONS_00060431-exon-scaffold_341-1491911889:438172..439837Clytia hemisphaericaexon
TCONS_00060431-exon-scaffold_341-1491911889:436988..437106TCONS_00060431-exon-scaffold_341-1491911889:436988..437106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:436988..446608 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.37381	7.4232	3.01554	3.01629	14.9294	10.8866	12.4699	12.0569	5.64431	7.28183	8.47748	4.99034	7.57424	7.74237	7.73088	9.48335	8.84783	10.0934	4.69043	5.17351	7.03333	6.6925	18.6641	18.2322	11.4806	12.6268	4.16975	3.5775	14.2068	15.4185
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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