TCONS_00060424 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060424
Unique Name	TCONS_00060424
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	843

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_341:387136..391193-

transcript sequence

>TCONS_00060424 ID=TCONS_00060424|Name=TCONS_00060424|organism=Clytia hemisphaerica|type=transcript|length=843bp
NTCGGAACAGAGAATCCGTACGCCGCCCTCGCTAATGTGTCCGGTGCATT
TGATGACTTCTCGTTACTGGAAACACCACCAAAGCAGAAAAAGAAACCTT
TGAAGATTAGTCTCGATCCTGAGGTTGACATTGAAGATATGGATGAAGAG
GAGGTGTTCCAGTTGGAATTCAAACAGCACAAACGCCATTATTACATGGA
AAAGTTCGATATGGATATTGTTGAAGACTCTGCCATCCAAAAGATCTGTT
TGGAATACATCCGTGCTTTACAATGGATTGCCCATTACTATTTCAACGGC
CTCCAATCGTGGAGTTGGTATTATCCGTACCATTATGCACCGTTCATTTC
GGACGTCGCAAACTTCATCGTTCAAGACCTTCACTTCGAGATCGGTCACC
CCTTCAAACCTTTCGAACAACTTTTAGCTGTTTTACCGTCAGCCAGTCGC
AAATTGTTACCCAAGGCTTTTCAGGATTTGATGGTAATGGACAATTCAGC
GATCATTGACTTCTacccgcccgactttcgaacagATTTGAATGGTAAAC
AACAAGAATGGGAAGCCGTTGTACTCATCCCTTTCATTGACGAGACACGC
CTACTAAGAGCAATGGAAGAGTGCTATCTACGCCTTACAGACGAAGAAAA
AGAACGCAACAGTTTCGGAAAGTGCCTCAAATACACGTACGATCCTAACC
TCAATTTCATTTACCCGACATCCTACCCTGGTGTGTTTGAAGACGTCAAC
CGCTGCAAAGCGCACAAGGAGGATATCCACCGTGAACAGTTTCATCTGGA
CACGCGCTACTTGAAGAAAGGTCTAATGGAAGGTACACAGTTG

Run BLAST on NCBI

transcript from alignment at scaffold_341:387136..391193-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060424 ID=TCONS_00060424|Name=TCONS_00060424|organism=Clytia hemisphaerica|type=transcript|length=4058bp|location=Sequence derived from alignment at scaffold_341:387136..391193- (Clytia hemisphaerica)
NTCGGAACAGAGAATCCGTACGCCGCCCTCGCTAATGTGTCCGGTGCATT
TGATGACTTCTCGTTACTGGAAACACCACCAAAGCAGAAAAAGAAACCTT
TGAAGATTAGTCTCGATCCTGAGGTTAGTTTATTACTCTTTTTCACAGAT
AGGGTAGTCAAGTGCAATTTGCATTTGATTTTGTTAATACCATGCATTCA
AAATTTCATCGTTACACCAAGCAAGGAAATTGCTCAATTTGTAGGTAGAC
CTTCGTCAAAGGAGTACCGACCGCCTGGCAGAAGGGTCCTCTCACACAGT
AACGCTTTCAATCCACTATTTTGATCCTTTCTCATAACATTCAATCCACC
AGATGGACCCCTCTTTTAGAATTTACATTTTTTAATCCACCAACGGGATC
TCTCATACAACATTTACACTTTCTAATCCACCAGGTTGACATTGAAGATA
TGGATGAAGAGGAGGTGTTCCAGTTGGAATTCAAACAGCACAAACGCCAT
TATTACATGGAAAAGTTCGATATGGATATTGTTGAAGAGTAAGTCGAGCT
GTATGTTTAAAAAATCAGATCATCTGAAAGTAATCTCTCTAAAGTTTGTT
TTGAATTTTACTTCCAATAACGTACAATAGCACAAATGTCGAAGGTGTTA
TATGACTTTCAGATAGATACTTCTTGGTTATTTCTAAGTCAATGTTTTGA
CTCACGCACGAAATCAATTCTTATGTGTCGCTAGACGAAGTAAAGGTAAA
TACCTAACTACAGTAGTATAGCAGATGTAAGACTGTAACAAAACTCTGTG
ATACGGTATTGATGTACTTTCTTTCAGCTCTGCCATCCAAAAGATCTGTT
TGGAATACATCCGTGCTTTACAATGGATTGCCCATTACTATTTCAACGGC
CTCCAATCGTGGAGTTGGTAAGTATCATTCAGTTATTCAGTTTTGTGACG
ATATTTTGAACTTAATGTTGATTCTTTTTTTTATTCTGCAGAAGCTTAAC
TTAAATTTTGGTATAAAAACTTTAAAACCGGTTGTCTCTATCTTGAAAAA
GTTATGTAAAAAAAACCAAAAATTTTGACAAATTCAAAGTGCGATCCATT
AAAAACAATAGTAAGAATTTTAATGAAGAATAAACACTCAAAGGAAATTT
AATCAAAATGAAATTTTTAAGCATCGTTTTGGGAGTAATATAGTTTTCTT
GTTTTTTTTCGCGATCCTAATTAAATACATTTCATTTAAAAACAATTAAA
ATATAAGGCGAGCAAAACTGAACCAATGACATCAAAGTATTGATAAGGTG
GTATTTTGATGAATTTTTAATTTTTTGGGGTGGTTTCTTTGTGTTTTTAG
CTATTTAATCAAAATTTTCGAACTTTTAATGTGAGTTTTCACTTTCTTAG
CAATTTTTGTGCTTCAGAGACCTTAAGCAAGAAAAGTAACATCGTGAATT
TAAGAAAATGAATCCTTTTGAGGATGTGTACTCAGTTATCCATTTTCTTG
CGCCGCTTTTCTTCCCATTTCCCATCAAGACGTTTTTTTTTGATTGTCAT
TAAATAAAAAACAATTCATAAATATATGCAATGTTGAGTGACAGCGCCTA
GAAAATAGCAGTTTAGTCAGGTTTAGTAGTGCGTTTTAATGATCACGTCC
ATTTAATCCGCATTTCCATTTTCATTCTCAGTATTTGAGAATGCTTGCTT
TTACATCCTATTTTTCGGGCAATACGGAAAATATTTTCTCATCCTCCTCT
TCTTATACATCTGTTTCATCAGTTTCATCTCTGTCTCCTTATTTTTGTTC
ACTAAAAGCAAAAGCAATAATAATTGTTCTTTTTCAGCTTGGGCTAAATG
ACCTAGTAACTTACGCCATTCGATTTGCGTAAGTTACTCTTTGAAATCGA
AAGATGGCGGTTTTCGCTATACAAGAAATTAGCCCGAAATACCGAGAATC
GGTAATAGCAATTTTTTATTACAAAAAGTAATCAAAATTTAAGAACAAAT
TTCGATTTACGAAATAAATTTTTCTCATACAAACTTTGATTTTGAGTAGC
CAGGTTTTCCAATTCCTTTTCCGTTGCCGTAGACAACAAAGAGAATAACA
GCAAACTCATTCAAGGACGATATTTCGAATTCAACCATATATTATCAGGC
CCTTCCTGAGCCTGATGGAGAAAAAAAACATTGCAATTTACCGAATCTCG
ATTTCTCGGAAAAAATCCACCTTTATACTGCTGTTTTTTCCCTCTCTCTA
TTTTCTAGAATTCACATTCCTCTCTAGGTCGCCATTCCCCTCTTGTGGAT
TCGTGGATTTTTCCGTGTTTATTTAACTGTACCAGCCCTTCTCCCTCCAT
ATTACAGGTATTATCCGTACCATTATGCACCGTTCATTTCGGACGTCGCA
AACTTCATCGTTCAAGACCTTCACTTCGAGATCGGTCACCCCTTCAAACC
TTTCGAACAACTTTTAGCTGTTTTACCGTCAGCCAGTCGCAAATTGTTAC
CCAAGGCTTTTCAGGTAATGTTATCTTTAATTACTGCCCCATGAAAGTTA
CTGCCTAACCGACTATTAGACGTTGTAAGAAAATTATACATATGATAAAA
CTTTAAATACAATAAGTAGCAAAAAAGGCGGCTATAGAAATTGGTTTTAA
AATCAATCTTTCAACAATTGATGGGTGGATTTCTAATAATGGATTTCACT
TTTTCCCAGCACTCTGCCCAATAATCCTAAACTAGCATTGAGTTTTCTTC
TGCCATGAAAACATCTAAACTTTTGACATTAAAATACAATATCTATCCAT
CTAATAATCATAGAATTACCCAGCTGAAAAATTCAACTTTATTTTATTCC
TTTGTCAGGATTTGATGGTAATGGACAATTCAGCGATCATTGACTTCTAC
CCGCCCGACTTTCGAACAGATTTGAATGGTAAACAACAAGAATGGGAAGC
CGTTGTACTCATCCCTTTCATTGACGAGGTAAATCTTTTCATATGTAAAG
ACTCCTAACCACGCCAAAACATATTCTTAACGCCCCACCACGCCAAAACA
TATTCTTAACGCCCCACCACGCCAAAACATATTCTTAACGCCTCACCACG
CCAAAACATATTCTTAACGCCCCACCACGCCAAAACATATTCTTTAATCA
CATAATCCCACCAAAAAATTCTCAATTACACCATTATGCAAACCGCGTGG
AGCCCTAAATACACCTGTCAACCTGGAGGTCCTATAAATTAACCTCTCGT
TCATTTGTTGCTAGCTTTTATCGGGATTGGTTCATAGGATGTCTTAAATT
TTTGGCACAAAGATGCAAAATAGTAATTCCCTAAATGTGACGAAGCCTCA
TTTTCGAAAAAAAACAAACTTTTCCGGTCGCCAGACCCGGAAATGTCCCG
GAAAATCGGTTTTCGAGATTTTCTCAATATTTTCTCAATATTTTCTCATT
AGTTTTTCCTGATTTTTTATACAAAATGCGTATTAGTACAGCCATGAATG
TGTCGAATACATTTTCCTGAAAAAAGATTTGACAGGTCTTCACAACCGGA
AATATGCTGGAGATCGCCATTTTTCATAATTCCGTGACACTTTTTCTTTT
GACTTGATTATTTCTATTGAAAAACTTTTGATTGCCAAAAAAAAAATATT
TTCAACCTGGAACTCCTTATAATTCGCCGGAACAGCCGGAAACCGGCGTA
AAACGGTTTTTTTTATTACTATCGACGGGTTTTCATGATTTAAGCCAATG
TCGTAAACCACTAAAAGCCTACAATGTTCTGGTTTTCTATCCTTCTGTTT
TACTTATAGACACGCCTACTAAGAGCAATGGAAGAGTGCTATCTACGCCT
TACAGACGAAGAAAAAGAACGCAACAGTTTCGGAAAGTGCCTCAAATACA
CGTACGATCCTAACCTCAATTTCATTTACCCGACATCCTACCCTGGTGTG
TTTGAAGACGTCAACCGCTGCAAAGCGCACAAGGAGGATATCCACCGTGA
ACAGTTTCATCTGGACACGCGCTACTTGAAGAAAGGTCTAATGGAAGGTA
CACAGTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038000	XLOC_038000	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_341	supercontig	scaffold_341:387136..391193 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.618365	1.12184	18.0605	14.1848	13.5977	10.7343	4.4528	4.88146	3.33007	1.03315	3.25441	1.28861	1.72483	2.08885	2.46128	3.71432	3.88953	5.06229	1.899	2.44202	1.869	1.97289	1.48217	2.60205	0	0	1.76834	0.907283	1.63376	2.76174

Blast

[Close]

BLAST of TCONS_00060424 vs. Swiss-Prot (Human)
Match: XRN1 (5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.349e-78
Identity = 119/216 (55.09%), Postives = 155/216 (71.76%), Query Frame = 1

Query:  154 VFQLEFKQHKRHYYMEKFDMDIVEDSAIQKICLEYIRALQWIAHYYFNGLQSWSWYYPYHYAPFISDVANFIVQDLHFEIGHPFKPFEQLLAVLPSASRKLLPKAFQDLMVMDNSAIIDFYPPDFRTDLNGKQQEWEAVVLIPFIDETRLLRAMEECYLRLTDEEKERNSFGKCLKYTYDPNLNFIYPTSYPGVFEDVNRCKAHKEDIHREQFHLD 801
            +F+ EF+Q+KR YYM K  +D+V D  +      Y++A+QWI HYY++G+QSWSWYYPYHYAPF+SD+ N     +HFE+G PFKPFEQLLAVLP+AS+ LLP  +Q LM  ++S II++YPPDF+TDLNGKQQEWEAVVLIPFIDE RLL AME C   L  EE++RN   +CL   YD +  FIYP+ +P  F  + RC    + I  + + +D
Sbjct:  425 LFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVD 640

The following BLAST results are available for this feature:

BLAST of TCONS_00060424 vs. Swiss-Prot (Human)

BLAST of TCONS_00060424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
XRN1	2.349e-78	55.09	5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE...	[more]

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TCONS_00060424 (transcript) - C. hemisphaerica