TCONS_00060421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060421
Unique NameTCONS_00060421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060421 ID=TCONS_00060421|Name=TCONS_00060421|organism=Clytia hemisphaerica|type=transcript|length=1335bp
ACAGTGTTGTAACCAGAGAAAATTACTTCCACCAAATTATCTGTTCACTA
AACATCCTGAGGGGTTCAAAGCATTTATTTCACTGGACGGACGCCATATT
AGCGGACAGATCTGTCCCACTCAACAACAAGCCATGGAAAACGTGGCCAC
AATTGCTCTCCAACAATTAACTGGTGTAGCGACAGCCTTTTCACCGGCGT
TCGTTCAGCCTGTAGTCCAACCTCCTCAACCATCACTGCAACAACATCAA
CCACAGGCTAATTATCACATGCAACGACAGCCGTCTCCTGCACAGAATAA
TATAATAAGACAGAGCCAATCGGATTCTAATTTATcatcaacaaaagaaa
acaaaacaccGTTACGCCCGAACCCGTTCGTGCCACACCAGGTCTCAGTC
AAAAATACAAAGTGGGAAGAAAGCAAGCAACCCGAAGTTCATGGACCGCC
ACCACCTATCAACGTCAAGGCCGAATGTGACCTCAAAGAGATGTTAGGTA
TCCAAGCTAGATCTAGCCCTGATCCCATGCAGCAAAGTGAAGGTGAACTG
AAGAAGATGTTAGGAATAGTTGGTAAGCCTTCAACGTCACCTCAACCACC
AGATTCTCCTGGTCAAGACATTCTGAAAAGCATTGGTGTCACCAGATCTT
CACCAGCACTTACAGCAACCTCAATGGAGAACCAACTCACTGATGACATG
AAACTCATGAACCTGATAGGAATCAAACCAAATTCCTCGACCTCACCGCC
AACCAATAATGTCGGTAGGCCACTACATCAAACAGCTTCTGAACCAATCA
TGATTCAAGAGAGACCTACCCAGCAGGTAAACATACCAAAACAATCAACT
GCGGCGCATTCTAGCGCTTCTGCATCACAATCATCTTCATCACCACTGCT
TCAAACAAGAACACAAGCGGCCAAACCGTCACCTAGCAACAGTTCAAGAT
CCTCCCCAGCTCTCTCAACAGCCTCAAGCAACAGAAGCCAAAATTCATCT
CCAGCACCTGGAAATGCAACCAAGAAACCAATCCTCTTAGCTCCAACTTT
CTTCGGAGCTAAAAAGAAGTAAAATGCTCGCctattggattgaattggtt
tAAGAATACTACTGTATACGTATTTACTTTATTACTTGAATTactatttg
tttttgtttttgttctcgGATCATAGTTTTAAACCTTTTGTCCGTTCTTG
AATATTCGACCATGCTGTTTATTTTGCAAATAATTCTGTCTTTCCCTTAT
TTGTGTTGAAAGTAGTCAATCTTTCAGTTTGTCAATTTCCACGAACTTTT
GGTAATTTGAGATGAAGTTGCTTTGTTTGCGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_341:363868..367530-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060421 ID=TCONS_00060421|Name=TCONS_00060421|organism=Clytia hemisphaerica|type=transcript|length=3663bp|location=Sequence derived from alignment at scaffold_341:363868..367530- (Clytia hemisphaerica)
ACAGTGTTGTAACCAGAGAAAATTACTTCCACCAAATTATCTGTTCACTA
AACATCCTGAGGTATTTATCTCTTTTGTTTAAAAGGCTGAAACGAAGCAT
GATGCCCAAGGGGTTGACCATCGTCCTCTATGCAAAATATTCGATGGAGT
ATTTGCAAATTCAGAGTGATGCTACTTTTGAAACTAAAAGATACATATGC
TGAGGATGGCAACAAAGAAGCGTGATTGTCTTGAAATGGAGCGCTACACT
AAGTTTTCGGATTTGATTACTTTTAATATCATTTGTCTTCTTCACTTTAA
ACAGGGGTTCAAAGCATTTATTTCACTGGACGGACGCCATATTAGCGGAC
AGATCTGTCCCACTCAACAACAAGCCATGGAAAACGTGGCCACAATTGCT
CTCCAACAATTAGTAAGAACCAATCATACAATCACATGTTTCAAATTCTT
CCCTATTCTTCAGCCTTCCACAAACGTATTCAGTCCCTAGATTTATCGTT
AATAAAATTAAACAACGAGCCAATGTTGGCTCGTAATGTGTATGCTTGAT
TATTGATTATCCGAAGCGACGCTTATAGCACCACGGACATCAACATGCTA
TCGCAAGGCCCGTTGCTGGGCCATTGATCGAAACTTCTTGTCTCATGTGT
ATAAGGAATTCTTTATTCAATAAGTAATCACTTGCAAAACTGTGTCCAAA
TATCATCTATAAAGCTTTTTTTCATTTACCAGACTGGTGTAGCGACAGCC
TTTTCACCGGCGTTCGTTCAGCCTGTAGTCCAACCTCCTCAACCATCACT
GCAACAACATCAACCACAGGCTAATTATCACATGCAACGACAGCCGTCTC
CTGCACAGAATAATATAATAAGACAGGTTCGTCTTATAATTTTCTCTCGT
TCGAATTCATTTTTCTAGGGAAATTAAGAACATTCGAAGAACCTTTTTAG
GCTTAAAACTTAAAAAGTTGAGAACAAGTGAAGGCTTCAAAAAGTTTAAT
TTTTTTGTAAAACGTGTTTTCTTAGAAATGTTCCAAGTGAACCGACTCTT
TTAGGTCTCGAATTTTTGTTATCGATAATCAGAATCTATCACATCATCAT
TGCCTGTAAAATTGCAATGCATTACTGTTTGTTTCCATCATAGAGCCAAT
CGGATTCTAATTTATCATCAACAAAAGAAAACAAAACACCGTTACGCCCG
AACCCGTTCGTGCCACACCAGGTTTATTTAGATTATCTTCTTTTCGCATT
TGGAAACGGTCTGCTGAATATAAACAGCAACCACTCGGCTGCCAGAGTAT
CTCAGGGTATTTCAGCTCCAATTCAGTCAACTGTCAACCCCCATCTCCTC
CGAATAAAGTTGAGGGTAGCAATTTTTATTCCCGTCTTGGTCGAGAGATG
CCTTTCTTCGGTGTTTTATCAGGGCTTTTCTGCTTTTCGGGTTTAAACAG
GTTGGGGTTTATGATTAGGTTTAAAAGAAAGGTTGCAACCAGTTAAGATT
TTCCTACCGGGTGACCCACGAAAAAGTTCAGACATTTCCCGACATCTTGA
GGCCGAACAAATATCCCAAAGTGCTTGGAGTTTTGATATTTAGAAGGTAG
ATATCCTAACTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAACTTG
TTCTCTACTTATGATCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTCGG
AAAGTGTTAAAACNCTACTTATGAGCTTTAAACTCAAAATTCACTTTTCG
GAAAGTGTAAAAAAACACGTAAAAAAGAGGTATCAAATTCATGCAATCAA
TTAGAAAATCACTTACAAATTGACCTATTTAACGAGTTTTATGACATTAA
TAATTAATAAAAACACCTTTGAAAGCAATTTTTGTTTAAAACAAGACTAG
TTTTTATAAAAGTTGGCGCTTTCATAGATTTTTTTCAAAAACTGTATATC
AAGAACGTCTAAAAATACCAAATTTGATACCCCTTTTTTACGTGTTTTTT
ACACTTTCCGTAAAGTGAATTTTGACTTTAAAAGCTCATAAGCAGAGAGC
AAGTTGGTCTAATTTAAAAAGTGATAGCTCAAATTTTAAGTTAGGATATC
TACTTTCTAAATATCAAAACTCCAAGCACTTTGGGACATTTGTTCGGCCT
CAAGACGTCGGAAAACGTCTGAACTTTTTTGTGGGTCACCCGGTAGTTTC
GTTGTTTTAATGGATGCAATGTTCTTATGATAACTTTTCACCTTTTAATT
CACTATCCCTATCCGTTTTACTTAATACGTCTTTTGAGATACAAGAACAC
TGGTGTGAGGCTCTTTGCTGGTTCCTTTTGAACCTGAAACCTATACTTAG
ATTGTCTAGTATTAACAATTAATTAATCAGTTGATTTACTTTCTAACCCT
TTTACCCTCGTGAGCAGGTCTCAGTCAAAAATACAAAGTGGGAAGAAAGC
AAGCAACCCGAAGTTCATGGACCGCCACCACCTATCAACGTCAAGGCCGA
ATGTGACCTCAAAGAGATGTTAGGTATCCAAGCTAGATCTAGCCCTGATC
CCATGCAGCAAAGTGAAGGTGAACTGAAGAAGATGTTAGGAATAGTTGGT
AAGCCTTCAACGTCACCTCAACCACCAGATTCTCCTGGTCAAGACATTCT
GAAAAGCATTGGTGTCACCAGATCTTCACCAGCACTTACAGCAACCTCAA
TGGAGAACCAACTCACTGATGACATGAAACTCATGAACCTGATAGGAATC
AAACCAAATTCCTCGACCTCACCGCCAACCAATAATGTCGGTAGGCCACT
ACATCAAACAGCTTCTGAACCAATCATGATTCAAGAGAGACCTACCCAGG
TAATCCTTTTATAGCCGATTCCAGAATTTTCCTAAACTGCACGCATCCCT
GACATGGTTTTTGTTCCAAGGGATGCGAATCAGACTCAAAAAAGCTCTTC
CGCTTAGCAGGCTCTAATGTTATATGCATATGATTTCAAAATTTATATTA
ACCTTAAACCATTTGCTTGACACCAGTTTATAGAATACCTTTTTTTACGT
CGGCCCCAATTTAATTCCCATCTCTTACGCCGGCCCTTATAATGCCAGCG
ACAAAAAAAATAACCAACTCTAAATTTATTAATCCGTCTCCTTCCTTACA
GCAGGTAAACATACCAAAACAATCAACTGCGGCGCATTCTAGCGCTTCTG
CATCACAATCATCTTCATCACCACTGCTTCAAACAAGAACACAAGCGGCC
AAACCGTCACCTAGCAACAGTTCAAGATCCTCCCCAGCTCTCTCAACAGC
CTCAAGCAACAGAAGCCAAAATTCATCTCCAGCACCTGGAAATGCAACCA
AGAAACCAATCCTCTTAGCTCCAACTTTCTTCGGAGCTAAAAAGAAGTAA
AATGCTCGCCTATTGGATTGAATTGGTTTAAGAATACTACTGTATACGTA
TTTACTTTATTACTTGAATTACTATTTGTTTTTGTTTTTGTTCTCGGATC
ATAGTTTTAAACCTTTTGTCCGTTCTTGAATATTCGACCATGCTGTTTAT
TTTGCAAATAATTCTGTCTTTCCCTTATTTGTGTTGAAAGTAGTCAATCT
TTCAGTTTGTCAATTTCCACGAACTTTTGGTAATTTGAGATGAAGTTGCT
TTGTTTGCGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038000XLOC_038000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060421-exon-scaffold_341-1575043694:367470..367530TCONS_00060421-exon-scaffold_341-1575043694:367470..367530Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1575043694:367119..367226TCONS_00060421-exon-scaffold_341-1575043694:367119..367226Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1575043694:366655..366798TCONS_00060421-exon-scaffold_341-1575043694:366655..366798Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1575043694:366310..366387TCONS_00060421-exon-scaffold_341-1575043694:366310..366387Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1575043694:364682..365113TCONS_00060421-exon-scaffold_341-1575043694:364682..365113Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1575043694:363868..364379TCONS_00060421-exon-scaffold_341-1575043694:363868..364379Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1510915933:367470..367530TCONS_00060421-exon-scaffold_341-1510915933:367470..367530Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1510915933:367119..367226TCONS_00060421-exon-scaffold_341-1510915933:367119..367226Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1510915933:366655..366798TCONS_00060421-exon-scaffold_341-1510915933:366655..366798Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1510915933:366310..366387TCONS_00060421-exon-scaffold_341-1510915933:366310..366387Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1510915933:364682..365113TCONS_00060421-exon-scaffold_341-1510915933:364682..365113Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1510915933:363868..364379TCONS_00060421-exon-scaffold_341-1510915933:363868..364379Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1491911889:367470..367530TCONS_00060421-exon-scaffold_341-1491911889:367470..367530Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1491911889:367119..367226TCONS_00060421-exon-scaffold_341-1491911889:367119..367226Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1491911889:366655..366798TCONS_00060421-exon-scaffold_341-1491911889:366655..366798Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1491911889:366310..366387TCONS_00060421-exon-scaffold_341-1491911889:366310..366387Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1491911889:364682..365113TCONS_00060421-exon-scaffold_341-1491911889:364682..365113Clytia hemisphaericaexon
TCONS_00060421-exon-scaffold_341-1491911889:363868..364379TCONS_00060421-exon-scaffold_341-1491911889:363868..364379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:363868..367530 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.70574	0.507532	39.4745	49.848	4.61636	4.75218	1.97641	5.52469	3.32508	8.07685	6.50919	1.24026	3.06702	1.94944	2.68799	1.97008	7.34521	5.08969	3.67102	2.61052	2.95928	3.68992	9.20859	4.95149	3.57769	0.599942	5.53549	5.65965	8.20361	6.55857
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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