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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060375 ID=TCONS_00060375|Name=TCONS_00060375|organism=Clytia hemisphaerica|type=transcript|length=4025bpRun BLAST on NCBI protein sequence of TCONS_00060375-protein >TCONS_00060375-protein ID=TCONS_00060375-protein|Name=TCONS_00060375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=871bp QFASDHYSSVETDMEDITLDCYAIQDNNLNSQISVKYAKDPVNTTIGDPKRun BLAST on NCBI transcript from alignment at scaffold_341:247040..270815+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060375 ID=TCONS_00060375|Name=TCONS_00060375|organism=Clytia hemisphaerica|type=transcript|length=23776bp|location=Sequence derived from alignment at scaffold_341:247040..270815+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_341:247040..270815+ >TCONS_00060375 ID=TCONS_00060375|Name=TCONS_00060375|organism=Clytia hemisphaerica|type=CDS|length=54936bp|location=Sequence derived from alignment at scaffold_341:247040..270815+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060375 vs. Swiss-Prot (Human)
Match: ABCA3 (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2) HSP 1 Score: 443.736 bits (1140), Expect = 2.352e-130 Identity = 268/708 (37.85%), Postives = 402/708 (56.78%), Query Frame = 1
Query: 487 FTRSSWHGMPSALSAGSNIMLKLYTNDSAYGIQTSNHPLPKNALEKXXXXXXXGT--LNLXXXXXXXXXXXXXXXXXXXVQEKTSKAKHIQFVSGVSSVCYWLATFCWDFINYLVPXXXXXXXXXXXNLDEF--NGELGAIFIVLILFACAMLPFVYMMSFVFTSSXXXXXXXXXXXXXXXXXXXXXXFILD--ATQEYDIADALHHVFLLLPSYALPKAVMDIGLNKQRRDSCNIDASAKRECVRFNLKYRDDTFDMEGPGIGTHCLFMFLECIVYFLIVILIEEGFFLGK----CFGGGRSTTFSVNAR-----EDMDVQEERKKIHNMAQENIKNSALVVKNLTKVYRSS-GMMAVDHLCFEVPKKECFGLLGVNGAGKTTTFGMLTGELGITDGTAFLDGFNIQSHLKDVQQRLGYCPQFDALIEKMTGREMLRMFARLRGCPPHKLENVVDEAIAQLNLGKWADKMCGDYSGGNKRKLSTAIALVGDPPIVFLDEPTSGMDPASRRFLWNTLSGVLNSGRSIVLTSHSMEECEALCTRLVIMVNGQLKCIGSIQHLKSRYGQGYTLMMKIGSSNPQQQQAQNDTIYDGPKAEHQNGVTNQAYSGDNVDKLQPPQNNPLHRVPSAQTIADNTTKAMTFIQETFPGAYLIEQRQGYVQYQIYNPELRWSQIFGALEERVRDFGVVDYSVSQTSLEQVFINFAKEQ 2562
F ++H +AL+ N++ KL A I SN P P++AL+ + + G ++A L A +F+A++F V E+ +AKH+QFVSGV +WL+ WD I++L+P++++ ++F AF++ F +G + ++L+L+ A++P +Y+M+F F + AY+ + + ++ +A + V I+ A + +++ L HVFL+LP++ L AV N + R C A C ++N++Y+++ + PG+G M Y +++ LIE C R T + R ED DV +ER +I + +++ ++ L++K L+KVY ++AVD L V K ECFGLLG NGAGKTTTF MLTGE +T G AF+ G I S + V+QR+GYCPQFDAL++ MTGREML M+ARLRG P + V+ + L L A+K+ YSGGNKRKLST IAL+G+P ++FLDEP++GMDP +RR LW+T++ SG++I++TSHSMEECEALCTRL IMV GQ KC+GS QHLKS++G GY+L K+ S Q+ + D +TF PG+ L ++ QG V Y + +L W+++FG LE+ +GV DYSVSQ SLEQVF++FA Q
Sbjct: 1042 FNNQAYHSPATALAVVDNLLFKLLCGPHA-SIVVSNFPQPRSALQAAKDQFNEGRKGFDIALNLLFAMAFLASTFSILAVSERAVQAKHVQFVSGVHVASFWLSALLWDLISFLIPSLLLLVVFKAFDVRAFTRDGHMADTLLLLLLYGWAIIPLMYLMNFFFLGAATAYTRLTIFNILSGIATFLMVTIMRIPAVKLEELSKTLDHVFLVLPNHCLGMAVSSFYENYETRRYCTSSEVAAHYCKKYNIQYQENFYAWSAPGVGRFVASMAASGCAYLILLFLIETNLLQRLRGILCALRRRRTLTELYTRMPVLPEDQDVADERTRILAPSPDSLLHTPLIIKELSKVYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKVQSEGQQEALEEFKAFVD-----------------------------------------------LTF-----PGSVLEDEHQGMVHYHLPGRDLSWAKVFGILEKAKEKYGVDDYSVSQISLEQVFLSFAHLQ 1696 HSP 2 Score: 174.866 bits (442), Expect = 7.927e-44 Identity = 124/413 (30.02%), Postives = 195/413 (47.22%), Query Frame = 1
Query: 1330 FFLGKCFGGGRSTTFSVNAREDMDVQEERKKIHNMAQENIKNSALVVKNLTKVYR--SSGMMAVDHLCFEVPKKECFGLLGVNGAGKTTTFGMLTGELGITDGTAFLDGFNIQSHLKDVQQRLGYCPQFDALIEKMTGREMLRMFARLRGCPPHKLENVVDEAIAQLNL-GKWADKMCGDYSGGNKRKLSTAIALVGDPPIVFLDEPTSGMDPASRRFLWNTLSGVLNSGRSIVLTSHSMEECEALCTRLVIMVNGQLKCIGSIQHLKSRYGQGYTL-MMKIGSSNPQQQQAQNDTIYDGPKAEHQNGVTNQAYSGDNVDKLQPPQNNPLHRVPSAQTIADNTTKAMTFIQETFPGAYLIEQRQGYVQYQIYNPELRWSQIFGALEERVRDFGVVDYSVSQTSLEQVFINFAK 2556
FF+ + G+ + ED D ++ + + A+ + + +K+L+KV+R + AV L + + + LLG NGAGKTTT MLTG T G A++ G+ I + +++ LG CPQ D L + +T E L +A+L+G K V + + + L KW + SGG +RKLS IAL+ ++ LDEPTSGMD SRR +W+ L S R+IVLT+H M+E + L R+ IM G+L+C GS LK +YG GY + ++K NP+ D + H H VP+A T+ + ++FI R+ +F LE++ ++ G+ + S T++E+VF+ K
Sbjct: 486 FFIMPSYWCGKPRAVAGKEEEDSDPEKALRNEYFEAEPEDLVAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSR-SRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQ-KSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPE----------DISQLVH-------------------------HHVPNA-TLESSAGAELSFILPR-------------------ESTHRFEGLFAKLEKKQKELGIASFGASITTMEEVFLRVGK 841 The following BLAST results are available for this feature:
BLAST of TCONS_00060375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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