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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060371 ID=TCONS_00060371|Name=TCONS_00060371|organism=Clytia hemisphaerica|type=transcript|length=2926bpRun BLAST on NCBI protein sequence of TCONS_00060371-protein >TCONS_00060371-protein ID=TCONS_00060371-protein|Name=TCONS_00060371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=936bp MAYVFRKLRLLIWKNFILQIRRPIGTCVELLLPVALLALLILARENVEDKRun BLAST on NCBI transcript from alignment at scaffold_341:228678..246764+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060371 ID=TCONS_00060371|Name=TCONS_00060371|organism=Clytia hemisphaerica|type=transcript|length=18087bp|location=Sequence derived from alignment at scaffold_341:228678..246764+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_341:228678..246764+ >TCONS_00060371 ID=TCONS_00060371|Name=TCONS_00060371|organism=Clytia hemisphaerica|type=CDS|length=64584bp|location=Sequence derived from alignment at scaffold_341:228678..246764+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060371 vs. Swiss-Prot (Human)
Match: ABCA3 (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2) HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0 Identity = 378/976 (38.73%), Postives = 550/976 (56.35%), Query Frame = 3
Query: 126 VFRKLRLLIWKNFILQIRRPIGTCVEXXXXXXXXXXXXXXRENVEDKNVCMSTYDDVSVDPTPGIKEL----AFERKTSHFHLAYYPMTAQVLSILQPVASKINVTLTKETKSGNVFTSKDNMLDTVK--QATDYYLGAITFDNV--EDGQPLPKNVKYSIRLHHSTPKKLGDN-------RRDSWQTQFVYPFFQAKGP-------SGNDLY-EKIFMPLQYLIDSSIIQQQTGNPSTSAPSH----VRHFPYPNYREDTFITIISSTMPTIFILAFIYTAVMIVKELVAEKQSRLKESMKMMGLANWMHWAAWFVKVMVFFLIVIILQTILLKVG-----RIFEFADASVVXXXXXXXXXXXXXXXXXXXXXXXNAIRGMLFAAVLWFGTLTPFFAIQDPQQYESLSNGAKFGCCLLPNTCLGIAIQIISRKESSQVGIRWNTVSQAPSVDDDFSLGNCFGVLIFDCFLFGFLTWYIENVFPGEFGLPKPFYFFLTPSYWCGSPNHRPG-SVTDMNGSKS-KGPNFEDEPEGGEIGVSIQDLRKVYKGATGKKVAVDSLSLNIYKGQITALLGHNGAGKTTTMSILTGLFPPTAGTAYINGNSILSNMDTIRESLGLCPQHNVLFDRLTVQEHLEFFTALKGIPIAKARPEIMQMIQDIQLFDKANSQSHTLSGGMKRKLNCAIALIGGSETIFLDEPTSGMDPYARRATWDLLQKYRANKTIILTTHFMDEADYLGDRIAIMADGELRCCGSSMFLKKRYGVGYHMTIVKSPEFDETKTCSLVNTTIPSAKMVGNLGAEMSYILEESSTKQFKGLFEQLEDNREAYGITSFGVSVTTLEEVFLKVGE-----------------------------GESLSGLQDETDGQGDREKLQPQRQDTFMDRDTLLSGCALFISQFKAMFIKRFLNSKRQKTAAITQIVLPIFLVVCGLALMSSSNVDEDDRSRELTL 2864
V R+L LL+WKN+ LQ R+ + T +EL LP+ +LI R ++ +NV + ++ P I+EL F + LAY P + + V + L + F S+ + D ++ + L A+ F++ +PLP VKY +R ++ + + W T ++P F GP G Y + F+ +Q+ +D +I++ + ++ FPYP + D F+ I +P + +L+F YTA+ I + +V EK+ RLKE M+MMGL++W+HW+AWF+ +F LI T+L V + +D S+V FLL + +++ F +ST FS A F L+F T P+F + + +LS K CLL N + + Q+I + E+ +GI+W + +VDDDF G G+L+ D L+G +TWY+E VFPG+FG+P+P+YFF+ PSYWCG P G D + K+ + FE EPE G+ I+ L KV++ + AV L+LN+Y+GQIT LLGHNGAGKTTT+S+LTGLFPPT+G AYI+G I +M IR+SLGLCPQH++LFD LTV EHL F+ LKG+ K E+ QM+ I L DK NS+S LSGGM+RKL+ IALI GS+ + LDEPTSGMD +RRA WDLLQ+ ++++TI+LTTHFMDEAD LGDRIAIMA GEL+CCGSS+FLK++YG GYHMT+VK P + LV+ +P+A + + GAE+S+IL ST +F+GLF +LE ++ GI SFG S+TT+EEVFL+VG+ +L G D +DG G ++ +R ++ +G AL QF AMF+K+ S R+ Q+++P+ V L ++ S+ DD LTL
Sbjct: 3 VLRQLALLLWKNYTLQKRKVLVTVLELFLPLLFSGILIWLRLKIQSENV-----PNATIYPGQSIQELPLFFTFPPPGDTWELAYIPSHSDAA---KTVTETVRRALVINMRVRG-FPSEKDFEDYIRYDNCSSSVLAAVVFEHPFNHSKEPLPLAVKYHLRFSYTRRNYMWTQTGSFFLKETEGWHTTSLFPLFPNPGPREPTSPDGGEPGYIREGFLAVQHAVDRAIMEYHADAATRQLFQRLTVTIKRFPYPPFIADPFLVAIQYQLPLLLLLSFTYTALTIARAVVQEKERRLKEYMRMMGLSSWLHWSAWFLLFFLFLLIAASFMTLLFCVKVKPNVAVLSRSDPSLVLAFLLCFAISTISFSFMVSTFFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQ--KLCSCLLSNVAMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVTWYMEAVFPGQFGVPQPWYFFIMPSYWCGKPRAVAGKEEEDSDPEKALRNEYFEAEPEDLVAGIKIKHLSKVFRVGNKDRAAVRDLNLNLYEGQITVLLGHNGAGKTTTLSMLTGLFPPTSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLSRQKCPEEVKQMLHIIGLEDKWNSRSRFLSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQKSDRTIVLTTHFMDEADLLGDRIAIMAKGELQCCGSSLFLKQKYGAGYHMTLVKEPHCNPEDISQLVHHHVPNATLESSAGAELSFILPRESTHRFEGLFAKLEKKQKELGIASFGASITTMEEVFLRVGKLVDSSMDIQAIQLPALQYQHERRASDWAVDSNLCGAMDPSDGIG--ALIEEERTAVKLN-----TGLALHCQQFWAMFLKKAAYSWREWKMVAAQVLVPLTCVTLALLAINYSSELFDDPMLRLTL 960 HSP 2 Score: 206.453 bits (524), Expect = 3.140e-54 Identity = 127/331 (38.37%), Postives = 182/331 (54.98%), Query Frame = 3
Query: 1644 IQDLRKVYKGATGKKVAVDSLSLNIYKGQITALLGHNGAGKTTTMSILTGLFPPTAGTAYINGNSILSNMDTIRESLGLCPQHNVLFDRLTVQEHLEFFTALKGIPIAKARPEIMQMIQDIQLFDKANSQSHTLSGGMKRKLNCAIALIGGSETIFLDEPTSGMDPYARRATWDLLQKYR-ANKTIILTTHFMDEADYLGDRIAIMADGELRCCGSSMFLKKRYGVGYHMTIVKSPE-----FDETKTCSLVNTTIPSAKMVGNLGAEMSYILEESSTKQFKGLFEQLEDNREAYGITSFGVSVTTLEEVFLKVGEGESLSGLQDETDGQG 2618
I++L KVY+ +AVD LSL + KG+ LLG NGAGKTTT +LTG T+G A++ G+ I S++ +R+ +G CPQ + L D +T +E L + L+GIP + ++ + L AN T SGG KRKL+ IALIG IFLDEP++GMDP ARR WD + + R + K II+T+H M+E + L R+AIM G+ +C GS LK ++G GY + E +E K + V+ T P + + + Y L K +F LE +E YG+ + VS +LE+VFL S + LQ T +G
Sbjct: 1383 IKELSKVYEQRV-PLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEESLTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLRGIPERHIGACVENTLRGLLLEPHANKLVRTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSHSMEECEALCTRLAIMVQGQFKCLGSPQHLKSKFGSGYSLRAKVQSEGQQEALEEFK--AFVDLTFPGSVLEDEHQGMVHYHLPGRDLSWAK-VFGILEKAKEKYGVDDYSVSQISLEQVFL------SFAHLQPPTAEEG 1703 The following BLAST results are available for this feature:
BLAST of TCONS_00060371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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