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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060368 ID=TCONS_00060368|Name=TCONS_00060368|organism=Clytia hemisphaerica|type=transcript|length=302bp GTACAGTGAAAACAAATACATTTTTATAGGTATTGAAACAATGACAGATT TCCACGATTACTTTTACAAGATAGTATTGATCGGAGATTCAGCAGTGGGA AAATCGTGTCTTCTTTCTCGATTCACTTACAATGAATTCAATAGTGAGTC GAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAGCGTGATCATTGATG ATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTACATCATTTTTTTTAC GTTATACTGTTGATTCAACATTCAACATAAAGACACTTATAACAGATTTG AA Run BLAST on NCBI transcript from alignment at scaffold_341:167071..168604+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060368 ID=TCONS_00060368|Name=TCONS_00060368|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_341:167071..168604+ (Clytia hemisphaerica) GTACAGTGAAAACAAATACATTGTGAGTTTTCCACAAATTTggttacctt
attacacgaatatttctagtcatttttttaacacgaattgaaagaTTTCG
TGTTAAAAACCTCCTTAATTAGAACCAGCCGTGGTGTTCttgaaaaaagc
aaataaaataatttttttgtgtgttaatttcaaggccgttgaataatTGC
CTAGTAACATTCGTGTATTGAGGGAGGAATTCGGTCCGGTTAGGTGGAAA
AGGGAAATTACTAAAAAACCCAGATTTATTTTGAGACATAATTTCTTAGC
TTTATGATGACTTATTGTAGCACATGTGCCAACCACGTTCACTTTTGATC
ATCTCTTAAATAAATTGACATAAACTTTCCAGCTTTTATACGGTTGTCAA
TAAGGATATGTATTTATTTTGGATTAAACGTATAAAATCGTCCCTTCTTC
GAACATTTTGAGTCATAAGGAAATTTGTAAACTAGTTGTGTGAATAAACA
TCGGAAGAGTTTTGCTTGTTGAAGGATTTCACATTTACCATCATCGTTTC
TTGTCAAAACGTCTTATAGTTAGTTAATGacatgattttgaaatttcaat
cgGTTTGGATGAGGAGTTAGAGTTTTAATGGCGTACAACAAGTTCATGTA
CTGGATGTGTTTATACCTTAACATTATCTTGAGTGATTGTTGGATACATT
ACACTTTTCTTCAAACCAGTGGTCGATATTTAACGGGACTACTGACGAAT
AGTTTCTCTTCAGCTCATATAACGTCCATGCATATCGTGGCAGTCTCAAA
TATATATGTTACCTCTCATCCGTCAGTGTGCTAAATAATGATGAACGATT
TTAAACTTTAACGCATGGTTCCATTTATGATTATTAGTACAATACAACTA
TCAGTCATTTTACCGAAAGCTATATTAAAGGGATTGGGTTGAGTTTATCA
GGGTTGAATGACGTCACATCCCTGAAGCCATTGCGGCGTGACCGCAAGGT
TATGCCACTATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCT
CTTATTATTCGTTTTTTAACTAATTTAGTCttataatatttatatttatt
ctaATGTATATCTCTTGgtccaaattttacaaattgcaTCGACACACTCA
CAGATAGAGACGTTTCTGACGTCATTCGAACCCAATCCTGCCGCAGTGGC
GTAAGGGTTAATTAGTGTTAACTTAAAGATTTTGTTCTGTTTTCCCTCTT
TTAGTTTATAGGTATTGAAACAATGACAGATTTCCACGATTACTTTTACA
AGATAGTATTGATCGGAGATTCAGCAGTGGGAAAATCGTGTCTTCTTTCT
CGATTCACTTACAATGAATTCAATAGTGAGTCGAAGAGTACGATCGGAGT
GGATTTTGCAACGAAGAGCGTGATCATTGATGATAAAGTTGTCAAAGTAC
AGGTATGCTGGCTCGTACATCATTTTTTTTACGTTATACTGTTGATTCAA
CATTCAACATAAAGACACTTATAACAGATTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00060368-exon-scaffold_341-1491911889:167071..167092 | TCONS_00060368-exon-scaffold_341-1491911889:167071..167092 | Clytia hemisphaerica | exon |
TCONS_00060368-exon-scaffold_341-1510915933:167071..167092 | TCONS_00060368-exon-scaffold_341-1510915933:167071..167092 | Clytia hemisphaerica | exon |
TCONS_00060368-exon-scaffold_341-1575043694:167071..167092 | TCONS_00060368-exon-scaffold_341-1575043694:167071..167092 | Clytia hemisphaerica | exon |
TCONS_00060368-exon-scaffold_341-1491911889:168325..168604 | TCONS_00060368-exon-scaffold_341-1491911889:168325..168604 | Clytia hemisphaerica | exon |
TCONS_00060368-exon-scaffold_341-1510915933:168325..168604 | TCONS_00060368-exon-scaffold_341-1510915933:168325..168604 | Clytia hemisphaerica | exon |
TCONS_00060368-exon-scaffold_341-1575043694:168325..168604 | TCONS_00060368-exon-scaffold_341-1575043694:168325..168604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_341 | supercontig | scaffold_341:167071..168604 + |
Blast
BLAST of TCONS_00060368 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 4.578e-18 Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query: 38 TMTDFHDYFYKIVLIGDSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKS 187
T D +DY +K+VLIGDS VGKS LLSRFT NEFN ESKSTIGV+FAT+S
Sbjct: 3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 52
The following BLAST results are available for this feature:
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