TCONS_00060368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060368
Unique NameTCONS_00060368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060368 ID=TCONS_00060368|Name=TCONS_00060368|organism=Clytia hemisphaerica|type=transcript|length=302bp
GTACAGTGAAAACAAATACATTTTTATAGGTATTGAAACAATGACAGATT
TCCACGATTACTTTTACAAGATAGTATTGATCGGAGATTCAGCAGTGGGA
AAATCGTGTCTTCTTTCTCGATTCACTTACAATGAATTCAATAGTGAGTC
GAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAGCGTGATCATTGATG
ATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTACATCATTTTTTTTAC
GTTATACTGTTGATTCAACATTCAACATAAAGACACTTATAACAGATTTG
AA
Run BLAST on NCBI

transcript from alignment at scaffold_341:167071..168604+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060368 ID=TCONS_00060368|Name=TCONS_00060368|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_341:167071..168604+ (Clytia hemisphaerica)
GTACAGTGAAAACAAATACATTGTGAGTTTTCCACAAATTTggttacctt
attacacgaatatttctagtcatttttttaacacgaattgaaagaTTTCG
TGTTAAAAACCTCCTTAATTAGAACCAGCCGTGGTGTTCttgaaaaaagc
aaataaaataatttttttgtgtgttaatttcaaggccgttgaataatTGC
CTAGTAACATTCGTGTATTGAGGGAGGAATTCGGTCCGGTTAGGTGGAAA
AGGGAAATTACTAAAAAACCCAGATTTATTTTGAGACATAATTTCTTAGC
TTTATGATGACTTATTGTAGCACATGTGCCAACCACGTTCACTTTTGATC
ATCTCTTAAATAAATTGACATAAACTTTCCAGCTTTTATACGGTTGTCAA
TAAGGATATGTATTTATTTTGGATTAAACGTATAAAATCGTCCCTTCTTC
GAACATTTTGAGTCATAAGGAAATTTGTAAACTAGTTGTGTGAATAAACA
TCGGAAGAGTTTTGCTTGTTGAAGGATTTCACATTTACCATCATCGTTTC
TTGTCAAAACGTCTTATAGTTAGTTAATGacatgattttgaaatttcaat
cgGTTTGGATGAGGAGTTAGAGTTTTAATGGCGTACAACAAGTTCATGTA
CTGGATGTGTTTATACCTTAACATTATCTTGAGTGATTGTTGGATACATT
ACACTTTTCTTCAAACCAGTGGTCGATATTTAACGGGACTACTGACGAAT
AGTTTCTCTTCAGCTCATATAACGTCCATGCATATCGTGGCAGTCTCAAA
TATATATGTTACCTCTCATCCGTCAGTGTGCTAAATAATGATGAACGATT
TTAAACTTTAACGCATGGTTCCATTTATGATTATTAGTACAATACAACTA
TCAGTCATTTTACCGAAAGCTATATTAAAGGGATTGGGTTGAGTTTATCA
GGGTTGAATGACGTCACATCCCTGAAGCCATTGCGGCGTGACCGCAAGGT
TATGCCACTATCCTTATGATGTGGATTTGTGATACTTGATTTGTTTGCCT
CTTATTATTCGTTTTTTAACTAATTTAGTCttataatatttatatttatt
ctaATGTATATCTCTTGgtccaaattttacaaattgcaTCGACACACTCA
CAGATAGAGACGTTTCTGACGTCATTCGAACCCAATCCTGCCGCAGTGGC
GTAAGGGTTAATTAGTGTTAACTTAAAGATTTTGTTCTGTTTTCCCTCTT
TTAGTTTATAGGTATTGAAACAATGACAGATTTCCACGATTACTTTTACA
AGATAGTATTGATCGGAGATTCAGCAGTGGGAAAATCGTGTCTTCTTTCT
CGATTCACTTACAATGAATTCAATAGTGAGTCGAAGAGTACGATCGGAGT
GGATTTTGCAACGAAGAGCGTGATCATTGATGATAAAGTTGTCAAAGTAC
AGGTATGCTGGCTCGTACATCATTTTTTTTACGTTATACTGTTGATTCAA
CATTCAACATAAAGACACTTATAACAGATTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037987XLOC_037987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060368-exon-scaffold_341-1491911889:167071..167092TCONS_00060368-exon-scaffold_341-1491911889:167071..167092Clytia hemisphaericaexon
TCONS_00060368-exon-scaffold_341-1510915933:167071..167092TCONS_00060368-exon-scaffold_341-1510915933:167071..167092Clytia hemisphaericaexon
TCONS_00060368-exon-scaffold_341-1575043694:167071..167092TCONS_00060368-exon-scaffold_341-1575043694:167071..167092Clytia hemisphaericaexon
TCONS_00060368-exon-scaffold_341-1491911889:168325..168604TCONS_00060368-exon-scaffold_341-1491911889:168325..168604Clytia hemisphaericaexon
TCONS_00060368-exon-scaffold_341-1510915933:168325..168604TCONS_00060368-exon-scaffold_341-1510915933:168325..168604Clytia hemisphaericaexon
TCONS_00060368-exon-scaffold_341-1575043694:168325..168604TCONS_00060368-exon-scaffold_341-1575043694:168325..168604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:167071..168604 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.20479	0	0	0	0	0	0	1.56421	2.67552	2.00823	0	7.51679	3.51092	9.86467	6.04838	2.76342	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00060368 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.578e-18
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2 
Query:   38 TMTDFHDYFYKIVLIGDSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKS 187
            T  D +DY +K+VLIGDS VGKS LLSRFT NEFN ESKSTIGV+FAT+S
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 52
The following BLAST results are available for this feature:
BLAST of TCONS_00060368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A4.578e-1874.00Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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