TCONS_00060367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060367
Unique NameTCONS_00060367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060367 ID=TCONS_00060367|Name=TCONS_00060367|organism=Clytia hemisphaerica|type=transcript|length=367bp
GCTAACAAATCCtctcatcaaaaatcaaaaattcaatctTCATTCGATAG
ACATTTGGTACAAACAACATTGGCTTTGGATAGAAAGTTTATAGGTATTG
AAACAATGACAGATTTCCACGATTACTTTTACAAGATAGTATTGATCGGA
GATTCAGCAGTGGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGA
ATTCAATAGTGAGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGA
GCGTGATCATTGATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTA
CATCATTTTTTTTACGTTATACTGTTGATTCAACATTCAACATAAAGACA
CTTATAACAGATTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00060367-protein

>TCONS_00060367-protein ID=TCONS_00060367-protein|Name=TCONS_00060367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
ANKSSHQKSKIQSSFDRHLVQTTLALDRKFIGIETMTDFHDYFYKIVLIG
DSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKSVIIDDKVVKVQVCWLV
HHFFYVILLIQHST
Run BLAST on NCBI

transcript from alignment at scaffold_341:166839..168604+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060367 ID=TCONS_00060367|Name=TCONS_00060367|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at scaffold_341:166839..168604+ (Clytia hemisphaerica)
GCTAACAAATCCtctcatcaaaaatcaaaaattcaatctTCATTCGATAG
ACATTTGGTACAAACAACATTGGCTTTGGATAGAAAGGTATGGTTTATTC
TTTATAAAAGATAGCCAGTAATTCATCTCTTGTATTAGATGCTGATCCTT
TGGTAATGAATGTGATGGTTTGCTGGATTTAAAAAATCCAGATAAAGGTT
TAAAACTGTAGAAAAAAATGTCTCTGAGTAATGTACAGTGAAAACAAATA
CATTGTGAGTTTTCCACAAATTTggttaccttattacacgaatatttcta
gtcatttttttaacacgaattgaaagaTTTCGTGTTAAAAACCTCCTTAA
TTAGAACCAGCCGTGGTGTTCttgaaaaaagcaaataaaataattttttt
gtgtgttaatttcaaggccgttgaataatTGCCTAGTAACATTCGTGTAT
TGAGGGAGGAATTCGGTCCGGTTAGGTGGAAAAGGGAAATTACTAAAAAA
CCCAGATTTATTTTGAGACATAATTTCTTAGCTTTATGATGACTTATTGT
AGCACATGTGCCAACCACGTTCACTTTTGATCATCTCTTAAATAAATTGA
CATAAACTTTCCAGCTTTTATACGGTTGTCAATAAGGATATGTATTTATT
TTGGATTAAACGTATAAAATCGTCCCTTCTTCGAACATTTTGAGTCATAA
GGAAATTTGTAAACTAGTTGTGTGAATAAACATCGGAAGAGTTTTGCTTG
TTGAAGGATTTCACATTTACCATCATCGTTTCTTGTCAAAACGTCTTATA
GTTAGTTAATGacatgattttgaaatttcaatcgGTTTGGATGAGGAGTT
AGAGTTTTAATGGCGTACAACAAGTTCATGTACTGGATGTGTTTATACCT
TAACATTATCTTGAGTGATTGTTGGATACATTACACTTTTCTTCAAACCA
GTGGTCGATATTTAACGGGACTACTGACGAATAGTTTCTCTTCAGCTCAT
ATAACGTCCATGCATATCGTGGCAGTCTCAAATATATATGTTACCTCTCA
TCCGTCAGTGTGCTAAATAATGATGAACGATTTTAAACTTTAACGCATGG
TTCCATTTATGATTATTAGTACAATACAACTATCAGTCATTTTACCGAAA
GCTATATTAAAGGGATTGGGTTGAGTTTATCAGGGTTGAATGACGTCACA
TCCCTGAAGCCATTGCGGCGTGACCGCAAGGTTATGCCACTATCCTTATG
ATGTGGATTTGTGATACTTGATTTGTTTGCCTCTTATTATTCGTTTTTTA
ACTAATTTAGTCttataatatttatatttattctaATGTATATCTCTTGg
tccaaattttacaaattgcaTCGACACACTCACAGATAGAGACGTTTCTG
ACGTCATTCGAACCCAATCCTGCCGCAGTGGCGTAAGGGTTAATTAGTGT
TAACTTAAAGATTTTGTTCTGTTTTCCCTCTTTTAGTTTATAGGTATTGA
AACAATGACAGATTTCCACGATTACTTTTACAAGATAGTATTGATCGGAG
ATTCAGCAGTGGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGAA
TTCAATAGTGAGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAG
CGTGATCATTGATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTAC
ATCATTTTTTTTACGTTATACTGTTGATTCAACATTCAACATAAAGACAC
TTATAACAGATTTGAA

Coding sequence (CDS) from alignment at scaffold_341:166839..168604+

>TCONS_00060367 ID=TCONS_00060367|Name=TCONS_00060367|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_341:166839..168604+ (Clytia hemisphaerica)
GCTAACAAATCCtctcatcaaaaatcaaaaattcaatctTCATTCGATAG
ACATTTGGTACAAACAACATTGGCTTTGGATAGAAAGTTTATAGGTATTG
AAACAATGACAGATTTCCACGATTACTTTTACAAGATAGTATTGATCGGA
GATTCAGCAGTGGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGA
ATTCAATAGTGAGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGA
GCGTGATCATTGATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTA
CATCATTTTTTTTACGTTATACTGTTGATTCAACATTCAACATAAGCTAA
CAAATCCtctcatcaaaaatcaaaaattcaatctTCATTCGATAGACATT
TGGTACAAACAACATTGGCTTTGGATAGAAAGTTTATAGGTATTGAAACA
ATGACAGATTTCCACGATTACTTTTACAAGATAGTATTGATCGGAGATTC
AGCAGTGGGAAAATCGTGTCTTCTTTCTCGATTCACTTACAATGAATTCA
ATAGTGAGTCGAAGAGTACGATCGGAGTGGATTTTGCAACGAAGAGCGTG
ATCATTGATGATAAAGTTGTCAAAGTACAGGTATGCTGGCTCGTACATCA
TTTTTTTTACGTTATACTGTTGATTCAACATTCAACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037987XLOC_037987Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060367-proteinTCONS_00060367-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060367-exon-scaffold_341-1491911889:166839..166925TCONS_00060367-exon-scaffold_341-1491911889:166839..166925Clytia hemisphaericaexon
TCONS_00060367-exon-scaffold_341-1510915933:166839..166925TCONS_00060367-exon-scaffold_341-1510915933:166839..166925Clytia hemisphaericaexon
TCONS_00060367-exon-scaffold_341-1575043694:166839..166925TCONS_00060367-exon-scaffold_341-1575043694:166839..166925Clytia hemisphaericaexon
TCONS_00060367-exon-scaffold_341-1491911889:168325..168604TCONS_00060367-exon-scaffold_341-1491911889:168325..168604Clytia hemisphaericaexon
TCONS_00060367-exon-scaffold_341-1510915933:168325..168604TCONS_00060367-exon-scaffold_341-1510915933:168325..168604Clytia hemisphaericaexon
TCONS_00060367-exon-scaffold_341-1575043694:168325..168604TCONS_00060367-exon-scaffold_341-1575043694:168325..168604Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:166839..168604 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.72509	5.32596	0	0.622496	0	2.53667	5.87846	5.68491	0.480307	0.993319	0	0	0	0	1.48977	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00060367 vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 9.152e-18
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  103 TMTDFHDYFYKIVLIGDSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKS 252
            T  D +DY +K+VLIGDS VGKS LLSRFT NEFN ESKSTIGV+FAT+S
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRS 52
The following BLAST results are available for this feature:
BLAST of TCONS_00060367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A9.152e-1874.00Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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