TCONS_00060367-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060367-protein
Unique NameTCONS_00060367-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length114

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060367-protein ID=TCONS_00060367-protein|Name=TCONS_00060367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
ANKSSHQKSKIQSSFDRHLVQTTLALDRKFIGIETMTDFHDYFYKIVLIG
DSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKSVIIDDKVVKVQVCWLV
HHFFYVILLIQHST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037987XLOC_037987Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060367TCONS_00060367Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 67..83
score: 36.81
coord: 44..65
score: 53.05
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 44..113
e-value: 3.7E-6
score: -32.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 43..98
e-value: 3.6E-17
score: 61.6
NoneNo IPR availablePROSITEPS51419RABcoord: 39..114
score: 11.872
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 43..95
e-value: 4.5E-12
score: 44.0
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 45..96
e-value: 2.2E-16
score: 59.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 40..103

Blast
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BLAST of TCONS_00060367-protein vs. Swiss-Prot (Human)
Match: RB11A (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.308e-23
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 0 
Query:   35 TMTDFHDYFYKIVLIGDSAVGKSCLLSRFTYNEFNSESKSTIGVDFATKSVIIDDKVVKVQVCW 98
            T  D +DY +K+VLIGDS VGKS LLSRFT NEFN ESKSTIGV+FAT+S+ +D K +K Q+ W
Sbjct:    3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI-W 65
The following BLAST results are available for this feature:
BLAST of TCONS_00060367-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11A3.308e-2365.63Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
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