TCONS_00060355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060355
Unique NameTCONS_00060355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length112

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060355 ID=TCONS_00060355|Name=TCONS_00060355|organism=Clytia hemisphaerica|type=transcript|length=112bp
TTGAGAATTTGTTCAATACCATCAAGAAGAGAGTTCGACAACAAGCCCTT
GATCACCAAATTGAACATGAAAGCTTTGAACAATTCTCCGAAAGAGTTAA
GCAAACCTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_340:314546..314657

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060355 ID=TCONS_00060355|Name=TCONS_00060355|organism=Clytia hemisphaerica|type=transcript|length=112bp|location=Sequence derived from alignment at scaffold_340:314546..314657 (Clytia hemisphaerica)
AGAAAGGTTTGCTTAACTCTTTCGGAGAATTGTTCAAAGCTTTCATGTTC
AATTTGGTGATCAAGGGCTTGTTGTCGAACTCTCTTCTTGATGGTATTGA
ACAAATTCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037978XLOC_037978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060355-exon-scaffold_340-1491911889:314546..314657TCONS_00060355-exon-scaffold_340-1491911889:314546..314657Clytia hemisphaericaexon
TCONS_00060355-exon-scaffold_340-1510915933:314546..314657TCONS_00060355-exon-scaffold_340-1510915933:314546..314657Clytia hemisphaericaexon
TCONS_00060355-exon-scaffold_340-1575043694:314546..314657TCONS_00060355-exon-scaffold_340-1575043694:314546..314657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:314546..314657 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top