TCONS_00060349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060349
Unique NameTCONS_00060349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060349 ID=TCONS_00060349|Name=TCONS_00060349|organism=Clytia hemisphaerica|type=transcript|length=665bp
TAGACACCAAGATTCAGTGTATACATGTGCAGTAGACTCATTTTTGGAAA
TAGCATATTCTACGTTTGGCTCATACATTGCTGAAATTGAGACACAGAGC
TTATTCTTTGATTTGTTAACAAATTGTTTGAAGTCATACAGTATCATTTT
GAATTCAGACATCACAGACAAtagagaaaatgaagaaaacttatCTATTA
TTCGTCAGCCTGTTTGGGACTTCTTAATTACAAATTGCGCATCTTTTGAA
AAACGTGATTGGAATGCTgagttttctctgattttttcagGAAGTATTGT
TCGTAATTTTTCAGAGCAAGAGAAAGCTTTATTTGAGACACGTTACAGAA
TAGAGGGATCATGCTCTAACTGCGGTGAAGAATTAATTCGTCAATgtagt
atatttttgaattaCATTTCAGAATTAAACTTAAATCTTTTAGATGACTT
CCATAATTGGCAAAATCTTTTGAACCCAGTTATGATTGATAAATCAATAA
TGTGCAGTAGTTGTGGGAATATTTCTCACGATACATCGCTAGTGTCATTT
GTTGCACCTACAATCTACCTTGTAGAATTTGGAGGTGATTATGATATAGA
ATTTGgacaaaatttggttttaaatgatcaaaactATGTCCTGAGAGGTC
TTGTTAGGCATAAAG
Run BLAST on NCBI

protein sequence of TCONS_00060349-protein

>TCONS_00060349-protein ID=TCONS_00060349-protein|Name=TCONS_00060349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
RHQDSVYTCAVDSFLEIAYSTFGSYIAEIETQSLFFDLLTNCLKSYSIIL
NSDITDNRENEENLSIIRQPVWDFLITNCASFEKRDWNAEFSLIFSGSIV
RNFSEQEKALFETRYRIEGSCSNCGEELIRQCSIFLNYISELNLNLLDDF
HNWQNLLNPVMIDKSIMCSSCGNISHDTSLVSFVAPTIYLVEFGGDYDIE
FGQNLVLNDQNYVLRGLVRHK
Run BLAST on NCBI

transcript from alignment at scaffold_340:152006..152670

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060349 ID=TCONS_00060349|Name=TCONS_00060349|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at scaffold_340:152006..152670 (Clytia hemisphaerica)
CTTTATGCCTAACAAGACCTCTCAGGACATagttttgatcatttaaaacc
aaattttgtcCAAATTCTATATCATAATCACCTCCAAATTCTACAAGGTA
GATTGTAGGTGCAACAAATGACACTAGCGATGTATCGTGAGAAATATTCC
CACAACTACTGCACATTATTGATTTATCAATCATAACTGGGTTCAAAAGA
TTTTGCCAATTATGGAAGTCATCTAAAAGATTTAAGTTTAATTCTGAAAT
GtaattcaaaaatatactacATTGACGAATTAATTCTTCACCGCAGTTAG
AGCATGATCCCTCTATTCTGTAACGTGTCTCAAATAAAGCTTTCTCTTGC
TCTGAAAAATTACGAACAATACTTCctgaaaaaatcagagaaaactcAGC
ATTCCAATCACGTTTTTCAAAAGATGCGCAATTTGTAATTAAGAAGTCCC
AAACAGGCTGACGAATAATAGataagttttcttcattttctctaTTGTCT
GTGATGTCTGAATTCAAAATGATACTGTATGACTTCAAACAATTTGTTAA
CAAATCAAAGAATAAGCTCTGTGTCTCAATTTCAGCAATGTATGAGCCAA
ACGTAGAATATGCTATTTCCAAAAATGAGTCTACTGCACATGTATACACT
GAATCTTGGTGTCTA

Coding sequence (CDS) from alignment at scaffold_340:152006..152670

>TCONS_00060349 ID=TCONS_00060349|Name=TCONS_00060349|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_340:152006..152670 (Clytia hemisphaerica)
TTTATGCCTAACAAGACCTCTCAGGACATagttttgatcatttaaaacca
aattttgtcCAAATTCTATATCATAATCACCTCCAAATTCTACAAGGTAG
ATTGTAGGTGCAACAAATGACACTAGCGATGTATCGTGAGAAATATTCCC
ACAACTACTGCACATTATTGATTTATCAATCATAACTGGGTTCAAAAGAT
TTTGCCAATTATGGAAGTCATCTAAAAGATTTAAGTTTAATTCTGAAATG
taattcaaaaatatactacATTGACGAATTAATTCTTCACCGCAGTTAGA
GCATGATCCCTCTATTCTGTAACGTGTCTCAAATAAAGCTTTCTCTTGCT
CTGAAAAATTACGAACAATACTTCctgaaaaaatcagagaaaactcAGCA
TTCCAATCACGTTTTTCAAAAGATGCGCAATTTGTAATTAAGAAGTCCCA
AACAGGCTGACGAATAATAGataagttttcttcattttctctaTTGTCTG
TGATGTCTGAATTCAAAATGATACTGTATGACTTCAAACAATTTGTTAAC
AAATCAAAGAATAAGCTCTGTGTCTCAATTTCAGCAATGTATGAGCCAAA
CGTAGAATATGCTATTTCCAAAAATGAGTCTACTGCACATGTATACACTG
AATCTTGGTGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037972XLOC_037972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060349-proteinTCONS_00060349-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060349-exon-scaffold_340-1491911889:152006..152670TCONS_00060349-exon-scaffold_340-1491911889:152006..152670Clytia hemisphaericaexon
TCONS_00060349-exon-scaffold_340-1510915933:152006..152670TCONS_00060349-exon-scaffold_340-1510915933:152006..152670Clytia hemisphaericaexon
TCONS_00060349-exon-scaffold_340-1575043694:152006..152670TCONS_00060349-exon-scaffold_340-1575043694:152006..152670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:152006..152670 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.420352	0.437585	0.751505	0.534428	0	0.443093	0.437383	0.293598	0	0.25607	0.416249	0.138743	0	0.174084	0.127453	0.369882	0.343353	0.356219	0.702709	0.989657	0.466534	0	0	0	0	0.0283481	0.240666	0.269897	0.721085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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