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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060314 ID=TCONS_00060314|Name=TCONS_00060314|organism=Clytia hemisphaerica|type=transcript|length=782bp
ttctttttacattttatagCTAATAAATTTTCATGACACAATGTGCTCAA
TCGTACCACAGCCCATAACGTTTGCAACAGATGGTGTTTTAGAACGTCCT
CCACTACCAGGCCTTTATATCAAAGATGTTGGTGATATTTCGTTACCATT
ATGTGAATCACAAGCCAAAGAAATTATTGAAATGGTTAAGGATAATTCTG
ACGATCCTTCTGTTGAAGAAAGGAATTCCTGGGAGATCAAATCAAATCAG
CTGGCTTTGGAAAGTGAAAAGTTCGAAATGACCTGGAAGAAAAAGATTAT
TCAAAAAGTCATTGCCGAATTAGGCTGTAAAGCTTCAGAGGAAGTCACTG
TGAGCACTCCAAGAGCTGTTTTGTATGGGAAAGGTGCTTCGATTGACTTG
ACAAGCGATGATGAGGACAAAGAATCAGTGACACTAATTGTTCAACTACC
ATCAGTATTCACTGGAAATAACCTCACTATCCACCACGATGAGgattcaa
aaataataaaatttgatgaaaaatactcaaaattcgAAATCATATATGGA
GCATTTTATTCAAACTGTGAATATGAGCTCTCTACTTTGAAATCTGGCTA
TCGATTGGTTCTTGTCTACAAGCTTACTTGGAATGATTGTAAAATTCCTC
AAAGTCGTATTGATGAAAGCAAAGAGGCTACACAAAAAGTGAAATCTGCA
TTGTCTCAGctTTACCAGAATCGAGAGAAGTATTTTGGATGGATGTTTGA
AGAAAAGTGGGATCCAGATACCATTGAAAGTG Run BLAST on NCBI transcript from alignment at scaffold_340:69148..71749+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060314 ID=TCONS_00060314|Name=TCONS_00060314|organism=Clytia hemisphaerica|type=transcript|length=2602bp|location=Sequence derived from alignment at scaffold_340:69148..71749+ (Clytia hemisphaerica)
ttctttttacattttatagCTAATAAATTTTCATGACACAATGTGCTCAA
TCGTACCACAGCCCATAACGTTTGCAACAGATGGTGTTTTAGAACGTCCT
CCACTACCAGGCCTTTATATCAAAGATGTTGGTGATATTTCGTTACCATT
ATGTGAATCACAAGCCAAAGAAATTATTGAAATGGTTAAGGATAATTCTG
ACGATCCTTCTGTTGAAGAAAGGTATgatatttttaatgaaataaagaaa
aagtttttgctAGCTCTGCGTTTGAGCTGGTCTGAGCTGAATTTGAAAAT
GCAATGGCAGGTTTCAGTTTACTAGACAAGCAACCTGCACTCTTGTTTTG
TTAATACTGACGTCAGCTTGTAATGTACTGATGTCAGAATATTATTGGAT
CAGATGTGTATTGCAGCGTGACATTGAGTTTAACATCCAAACAGGAATGA
CCATTGGGGTGCAAGCTGACTTCTTTAATATTCAATGAAGACGATGGTTG
AAAGATAAGACACccaaactttgaagagatttccttttttatttgatcgt
gcttttaagccagcttcaacataaaaaggacttttagtgcgttcagctac
agcttaaccggcttgcgacgccgggtaccggctagtagcTTTATAATGCT
TTAAGGACATGAAATCATACAAAAGATGATTACTAGAACAATTAAGTATA
TGGTACAAACACAGGAGGAGAGCAACATACAAAGGGATACTAAAGCATAG
GAGAAATAGGAGAAGACAAATTTGATATTGACCTAATTTACAAATTCATT
AAACATTAGtaaatataacaaaataaacTGCTTTATAAAGCATTCACATT
GAATGACCAGCCCAGCCAACCATTCACCTCACCCACAAGATTTTTGGAGA
TTATCCTGGATAGCCCACCAATAAACTCTTTTGTTCATCTttcttaattt
atttttgttgctTGGGTTGGCCAAGGCAGATGATTAATTTTACGTACGCT
GGTAAGGAATATTCAAGGTGATGGCAtctgaatgaaaagacattaatTAG
GTTCTTAACAAGTATATTTAAATATGTTAGAAAAGCTGGCTATAATAAGC
ATAATACCCCAGAACTCTAGGGGTCTACTATCTGAATATGATCAATAGAT
TTCAGAAATTGATTAGGTAACTTTgtatcattttgataaaaaaaaacttg
tgaaaataagaaaatgtgacaaaactcaaaattcacaaaatgttAGCTCA
AAAATGCATCCTTGTGAAACTACTTTGTTATTTTAGccttaaatcagttg
aaacAATTTctaatcacattttcaaaatcaatGGTACATCCTCTttctgt
tcttttaaaattatacctatgaatttctttgtttcCATGGCCGGTAAATC
AAAGGAAAGCTGCTTTTTAtggatttataaaagatttgaaGGTCCATTTA
GGTCATACCTGTGATGTTTTCTCTCACTCCATCTATCTTATTACCTTCAT
GCTCAGACATATCTCCAAATGATGTTGAACCATGGACGTTGATTCCACAT
TTGGGCTTGAAAACCACAATCTTGCATGTTTAGAATTCTTGATGTTTTAA
CCACTCAGCCGGACTTTCTCCTGTACTCTCGAAGATCTTTAGTCAAAGGT
TACTGAATTTGTTTCTTTCTTTAGGAATTCCTGGGAGATCAAATCAAATC
AGCTGGCTTTGGAAAGTGAAAAGTTCGAAATGACCTGGAAGAAAAAGATT
ATTCAAAAAGTCATTGCCGAATTAGGCTGTAAAGCTTCAGAGGAAGTCAC
TGTGAGCACTCCAAGAGCTGTTTTGTATGGGAAAGGTGCTTCGATTGACT
TGACAAGCGATGATGAGGACAAAGAATCAGTGACACTAATTGTTCAACTA
CCATCAGTATTCACTGGAAATAACCTCACTATCCACCACGATGAGgattc
aaaaataataaaatttgatgaaaaatactcaaaattcgAAATCATATATG
GAGCATTTTATTCAAACTGTGAATATGAGCTCTCTACTTTGAAATCTGGC
TATCGATTGGTTCTTGTCTACAAGCTTACTTGGAATGATTGTAAAATTCC
TCAAAGTCGTATTGATGAAAGCAAAGAGGCTACACAAAAAGTGAAATCTG
CATTGTCTCAGGTATCTTTTAATAGTGATATCGATTCTACAAATCTATTC
CACTTGTTCACTTTCATTATATAAAGTTAAACATTTCTCTTCATTGGTTC
TTagaaaaacagccttttttgaCTAACCATTTTTTGAttcgtttttaaat
aaaataactTTTCTATACTTTTTNGCCTTTTTTGACTaactattttttga
tttgtttttaaataaaataacttttctatactttttggacctacctggag
gtcctataaattaacctctgtccgttcgtccgtccgtccgttcgtccgtc
cgtctgttaccagcttttctcaNCATTTTTTGAttcgtttttaaataaaa
taacttttctatactttttctttttaaagctTTACCAGAATCGAGAGAAG
TATTTTGGATGGATGTTTGAAGAAAAGTGGGATCCAGATACCATTGAAAG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060314-exon-scaffold_340-1491911889:69148..69369 | TCONS_00060314-exon-scaffold_340-1491911889:69148..69369 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1510915933:69148..69369 | TCONS_00060314-exon-scaffold_340-1510915933:69148..69369 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1575043694:69148..69369 | TCONS_00060314-exon-scaffold_340-1575043694:69148..69369 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1491911889:70822..71308 | TCONS_00060314-exon-scaffold_340-1491911889:70822..71308 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1510915933:70822..71308 | TCONS_00060314-exon-scaffold_340-1510915933:70822..71308 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1575043694:70822..71308 | TCONS_00060314-exon-scaffold_340-1575043694:70822..71308 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1491911889:71677..71749 | TCONS_00060314-exon-scaffold_340-1491911889:71677..71749 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1510915933:71677..71749 | TCONS_00060314-exon-scaffold_340-1510915933:71677..71749 | Clytia hemisphaerica | exon |
| TCONS_00060314-exon-scaffold_340-1575043694:71677..71749 | TCONS_00060314-exon-scaffold_340-1575043694:71677..71749 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:69148..71749 + |
Blast
The following BLAST results are available for this feature:
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