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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060300 ID=TCONS_00060300|Name=TCONS_00060300|organism=Clytia hemisphaerica|type=transcript|length=1377bp
CACTAAGTCTCGCTACACATGACGATTTAGATGATACAAGAATTCGCTAG
GCATGAAAAggggatttgtttattttttgtcgtcacagaaaaatcaattt
tgacaCAAGAATTCGATGTGCAGGCGATGAAATTGAGACGACAACACGAG
GAAACGCACCAACTTCATGACAAACAAACCCTGTCAACAAAACAAGACAT
AtttatttgaaatcaaaacaagaaaaaattgcaaaattatgaACAAATCC
ACTCTCGTAGAAGAGACTGCCTACTTTTTTCTAGAGACGCTGAATTcttt
taagctttagaaatgtCTTTTACACAAGGAGTTCCACCGACCGGCGCAGC
AAACGAACGAACTACTTTGAAAAATATCGGTGATCCACAATTGAACAATC
GAAGCATGATTTTCGGGAAACGTTTATTGATTATCGCTGTGGTGAACTTT
TGTTGGTCCGCTTATCGAATTGTCAATTACAGTTTCGCTTTCGATGACAA
CCCGGCTGAATATGAAACTATGGAAGTTCATTATCTAACGTGTTCTGTCG
GACTCCTTTTCAACACTATTTCGATCGTTGTATCATCACTTCTATGTTAC
GCCGCTTTTTACGCGGACGCACTCCACCGGAGCGGCCGCTTGCTTCTAAT
ACCGTATATAGTCTGGCAGCCAATTGCTATCGGATTCGAGATTGGCATTC
TAGCTTACATCATTGTGAAGAACTTTCATAACATTCCTGACGAGATCGTT
ATTTACAGTATTGCAATCATTTTATTGACTCCATTATATTTCGCTGTTTG
TCTACAGTTGAGGTATTATAAAAACGTTGCAAAAGACAACGAAAAGAAGA
TGAGAAACTTCGCAGTTTCTTCACAAGAATTTCCGCGTCCTTGCGCGGCA
AATAATTCCTCCTATACAAGCTTTAGGGATGTTCTTCCAACGTATTGAAC
ATAAGGTTTATCGAGTTTTGTGGAAAGAGAAAAGTTTTCCTACAGGCTAA
TAACACTGTTGTGTCTTGCGCTGACAAGCTAGATCACAGACATCATAAAT
TAACATAACAGCAAACCTTGTTGTTGTTATTTGTTCAATGAGCAATCAGA
TCAGGAGAAACATTCATTCTAACAAGAAAAGACAtgttttcagatatttt
ttatcattgaaattcaacattTAAACCGTAAAAAATTTGCTTGTGTAAGA
TTTGACAAACAGTCAACCTCTCCCTATTCGAGCGTAGGCGATTTATGAAA
TACAAGTATTACACTGCACCACACATGTATCATTTCAAAACATTGCTGAC
TTATACTATAATGCCCTTTAATGACAATGGGATTCTAAGAAAAGTATTAT
TTGTACTTTTGGATGGTTGATTATTTT Run BLAST on NCBI protein sequence of TCONS_00060300-protein >TCONS_00060300-protein ID=TCONS_00060300-protein|Name=TCONS_00060300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MSFTQGVPPTGAANERTTLKNIGDPQLNNRSMIFGKRLLIIAVVNFCWSA
YRIVNYSFAFDDNPAEYETMEVHYLTCSVGLLFNTISIVVSSLLCYAAFY
ADALHRSGRLLLIPYIVWQPIAIGFEIGILAYIIVKNFHNIPDEIVIYSI
AIILLTPLYFAVCLQLRYYKNVAKDNEKKMRNFAVSSQEFPRPCAANNSS
YTSFRDVLPTY Run BLAST on NCBI transcript from alignment at scaffold_339:275083..276459 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060300 ID=TCONS_00060300|Name=TCONS_00060300|organism=Clytia hemisphaerica|type=transcript|length=1377bp|location=Sequence derived from alignment at scaffold_339:275083..276459 (Clytia hemisphaerica)
AAAATAATCAACCATCCAAAAGTACAAATAATACTTTTCTTAGAATCCCA
TTGTCATTAAAGGGCATTATAGTATAAGTCAGCAATGTTTTGAAATGATA
CATGTGTGGTGCAGTGTAATACTTGTATTTCATAAATCGCCTACGCTCGA
ATAGGGAGAGGTTGACTGTTTGTCAAATCTTACACAAGCAAATTTTTTAC
GGTTTAaatgttgaatttcaatgataaaaaatatctgaaaacaTGTCTTT
TCTTGTTAGAATGAATGTTTCTCCTGATCTGATTGCTCATTGAACAAATA
ACAACAACAAGGTTTGCTGTTATGTTAATTTATGATGTCTGTGATCTAGC
TTGTCAGCGCAAGACACAACAGTGTTATTAGCCTGTAGGAAAACTTTTCT
CTTTCCACAAAACTCGATAAACCTTATGTTCAATACGTTGGAAGAACATC
CCTAAAGCTTGTATAGGAGGAATTATTTGCCGCGCAAGGACGCGGAAATT
CTTGTGAAGAAACTGCGAAGTTTCTCATCTTCTTTTCGTTGTCTTTTGCA
ACGTTTTTATAATACCTCAACTGTAGACAAACAGCGAAATATAATGGAGT
CAATAAAATGATTGCAATACTGTAAATAACGATCTCGTCAGGAATGTTAT
GAAAGTTCTTCACAATGATGTAAGCTAGAATGCCAATCTCGAATCCGATA
GCAATTGGCTGCCAGACTATATACGGTATTAGAAGCAAGCGGCCGCTCCG
GTGGAGTGCGTCCGCGTAAAAAGCGGCGTAACATAGAAGTGATGATACAA
CGATCGAAATAGTGTTGAAAAGGAGTCCGACAGAACACGTTAGATAATGA
ACTTCCATAGTTTCATATTCAGCCGGGTTGTCATCGAAAGCGAAACTGTA
ATTGACAATTCGATAAGCGGACCAACAAAAGTTCACCACAGCGATAATCA
ATAAACGTTTCCCGAAAATCATGCTTCGATTGTTCAATTGTGGATCACCG
ATATTTTTCAAAGTAGTTCGTTCGTTTGCTGCGCCGGTCGGTGGAACTCC
TTGTGTAAAAGacatttctaaagcttaaaagAATTCAGCGTCTCTAGAAA
AAAGTAGGCAGTCTCTTCTACGAGAGTGGATTTGTtcataattttgcaat
tttttcttgttttgatttcaaataaaTATGTCTTGTTTTGTTGACAGGGT
TTGTTTGTCATGAAGTTGGTGCGTTTCCTCGTGTTGTCGTCTCAATTTCA
TCGCCTGCACATCGAATTCTTGtgtcaaaattgatttttctgtgacgaca
aaaaataaacaaatccccTTTTCATGCCTAGCGAATTCTTGTATCATCTA
AATCGTCATGTGTAGCGAGACTTAGTG Coding sequence (CDS) from alignment at scaffold_339:275083..276459 >TCONS_00060300 ID=TCONS_00060300|Name=TCONS_00060300|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_339:275083..276459 (Clytia hemisphaerica)
TCAATACGTTGGAAGAACATCCCTAAAGCTTGTATAGGAGGAATTATTTG
CCGCGCAAGGACGCGGAAATTCTTGTGAAGAAACTGCGAAGTTTCTCATC
TTCTTTTCGTTGTCTTTTGCAACGTTTTTATAATACCTCAACTGTAGACA
AACAGCGAAATATAATGGAGTCAATAAAATGATTGCAATACTGTAAATAA
CGATCTCGTCAGGAATGTTATGAAAGTTCTTCACAATGATGTAAGCTAGA
ATGCCAATCTCGAATCCGATAGCAATTGGCTGCCAGACTATATACGGTAT
TAGAAGCAAGCGGCCGCTCCGGTGGAGTGCGTCCGCGTAAAAAGCGGCGT
AACATAGAAGTGATGATACAACGATCGAAATAGTGTTGAAAAGGAGTCCG
ACAGAACACGTTAGATAATGAACTTCCATAGTTTCATATTCAGCCGGGTT
GTCATCGAAAGCGAAACTGTAATTGACAATTCGATAAGCGGACCAACAAA
AGTTCACCACAGCGATAATCAATAAACGTTTCCCGAAAATCATGCTTCGA
TTGTTCAATTGTGGATCACCGATATTTTTCAAAGTAGTTCGTTCGTTTGC
TGCGCCGGTCGGTGGAACTCCTTGTGTAAAAGacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060300-exon-scaffold_339-1491911889:275083..276459 | TCONS_00060300-exon-scaffold_339-1491911889:275083..276459 | Clytia hemisphaerica | exon |
| TCONS_00060300-exon-scaffold_339-1510915933:275083..276459 | TCONS_00060300-exon-scaffold_339-1510915933:275083..276459 | Clytia hemisphaerica | exon |
| TCONS_00060300-exon-scaffold_339-1575043694:275083..276459 | TCONS_00060300-exon-scaffold_339-1575043694:275083..276459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:275083..276459 . |
Blast
The following BLAST results are available for this feature:
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