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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060280 ID=TCONS_00060280|Name=TCONS_00060280|organism=Clytia hemisphaerica|type=transcript|length=3678bpRun BLAST on NCBI protein sequence of TCONS_00060280-protein >TCONS_00060280-protein ID=TCONS_00060280-protein|Name=TCONS_00060280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1172bp MKMALSIAFFITACYQLACGAKTANYACPETTSDDDSVVIFGYVVEHDNVRun BLAST on NCBI transcript from alignment at scaffold_339:369181..380851- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060280 ID=TCONS_00060280|Name=TCONS_00060280|organism=Clytia hemisphaerica|type=transcript|length=11671bp|location=Sequence derived from alignment at scaffold_339:369181..380851- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_339:369181..380851- >TCONS_00060280 ID=TCONS_00060280|Name=TCONS_00060280|organism=Clytia hemisphaerica|type=CDS|length=42192bp|location=Sequence derived from alignment at scaffold_339:369181..380851- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060280 vs. Swiss-Prot (Human)
Match: ATS9 (A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens GN=ADAMTS9 PE=1 SV=4) HSP 1 Score: 122.479 bits (306), Expect = 8.588e-28 Identity = 71/209 (33.97%), Postives = 114/209 (54.55%), Query Frame = 2
Query: 782 RNCKDLKKKGYAKTDGHYFLHPTPKCDKAIKVYCYDMDSPEPKDFITLPSGPEHNMAYIYEKRM--------DLSKKFECEGPVGPIVYSKSGRTHFSKVRINLATMTIIQDDYTFATSDRQGSPVPFATGGDCFSAKQDAKCRKGSFKLDISNTGFKISSKVRWTLESDTNSLKIQDYRNSEGLVVSAKCGGWCGHCVPQPKLQVELQ 1384
+NCK++K+ A DG YFL K +K++C M S PK+++TL G N + +Y R+ + S++ +C+ Y+ +G + F K+RI+L +M II D FA + +G PVPFAT GDC+SA AKC +G F +++ TG ++ RW + + I+ ++ +G V KCGG+CG C P +E++
Sbjct: 1737 QNCKEVKRLKGASEDGEYFLMIR---GKLLKIFCAGMHSDHPKEYVTLVHGDSENFSEVYGHRLHNPTECPYNGSRRDDCQCRKD---YTAAGFSSFQKIRIDLTSMQIITTDLQFARTS-EGHPVPFATAGDCYSA---AKCPQGRFSINLYGTGLSLTESARWISQGNYAVSDIK--KSPDGTRVVGKCGGYCGKCTPSSGTGLEVR 1933 The following BLAST results are available for this feature:
BLAST of TCONS_00060280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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