Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060258 ID=TCONS_00060258|Name=TCONS_00060258|organism=Clytia hemisphaerica|type=transcript|length=292bp
GCGGAGAAATAAAATCGGAAATACAGGGAAAATTGACATCGGAGTAGTTC
TGAGTTGCGTTACTAAGCGACGTCTCGTTGCTACAAACCATAAAACGAAG
ACAACAAAGAAAAATGGCAAGGTAGTGGACGAGCCAGGCAAACCATCAAA
CAATACTGAGCGTGCTCAACAGAACGAAGAAAATGCGAAATCaaatgaag
aaagaaaacaatagaaGCAAACAATAAACAATCATTATCCAATGataaaa
ttctacaacaaaTTTTGAGAGGTGAGCACGGGAAACCAGTGA Run BLAST on NCBI transcript from alignment at scaffold_339:478973..480671+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060258 ID=TCONS_00060258|Name=TCONS_00060258|organism=Clytia hemisphaerica|type=transcript|length=1699bp|location=Sequence derived from alignment at scaffold_339:478973..480671+ (Clytia hemisphaerica)
GCGGAGAAATAAAATCGGAAATACAGGGAAAATTGACATCGGAGTAGTTC
TGAGTTGCGTTACTAAGCGACGTCTCGTTGCTACAAACCATAAAACGAAG
ACAACAAAGAAAAATGGCAAGGTAATCAagacaaatttattttatatcGG
TGTAATACTTACAGAATTTGTCATTTTATTTCAACAAGGAGCCTTTAAGA
AAATCAAAGTACAAACTAGAACAAACTGAGCTTCCGCCcggagagggggg
gggggcaggggCTGCCTAATGAAGGGTATGTGCGGActggacctccgaaa
accgacccttagagaaattctctttttttttacaattttttctctcgaaa
acaaaaatatttcctaaaaatcgtgaattttccgacccttacaaagacta
atttaaaactttttgatttttccgacacttagagagactttgaaaggtga
aaaacccgacttTTACCGTCCGCACTTACCTAGCACCCCATTGTTGCCTA
AGTAAAacatttactggttcttataaataaagtgATAAGAGGGAAGTATG
ACTTGCTCCTTCCTTACTCGACTGACACAATATtcttttcaacgttcatt
taaagTTAGACGAACGTTTTTTTTCATGATGATCGACTTGCGCGTctctt
atgctgacaaagcagaattaacaaaaaatttatcaaaatgtgTAAGGAAG
AACATTTTCTCTTTCGATtcgcttacacagcatttttaagcaaaaagaaa
GAGTACACACTTTGGAGAACTAAAAGTAAGTATATTCGTCGGGTTCCTGT
CGGGGTAGCCGGgtgtgagggagtctatccccttttctatttgcgctaaa
GCTTATAGAGATAAaatgctgaggtggagtgcCACACCTAGTCTCATCTC
GCAGTATCTTACTGCCTATAACAGATTACTCAATCTATGCTACTCATTTG
GTGAGTTGGCGGTGACTGGAGATCGAACCCGCAACCCACGAATGGTCTAC
AGACTGAGCTCCCCGACCAcgagaaattctattgttaatTGTGTTTTGTc
agcaaatatttaaaatacgTCGAATACGTTTGAAATACTTTTATGGCAGT
CAACGTTAATGGTTCCATTTTCAGGTAGTGGACGAGCCAGGCAAACCATC
AAACAATACTGAGCGTGCTCAACAGAACGAAGAAAATGCGAAATCaaatg
aagaaagaaaacaatagaaGCAAACAATAAACAATCATTATCCAATGata
aaattctacaacaaaTTTTGAGAGGTaaatagagtcgatattttacgtgg
ataacCCAGTAATTTAGGACtgttagacagtctttcgattatATTCGCGA
GGTCTACGGCCAACTGGCTCGGTTATCTAtaaactgaacggaacattgga
aggaacggggattcgaaccgcgaatccctggtttgagacgctaACACtat
tgaccacttggccatcgcaaTGAAAATGTAATGGAAATGTTCAACAATGG
AAATGTTCTAAACTCAAACCCAGTTCCTTTTTTATTCTGATAgtcatgaa
aatttaaaacttttcacttttttcaaaaggtttaTGTATAGTGCTTTCAA
TTAAACATAATCTGTTCCGTTTTTTTCCCTGAAAAATGGTGTAGTTTGTT
CAAAATCCAACCTTGATCAACTTTTTAGGTGAGCACGGGAAACCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060258-exon-scaffold_339-1491911889:478973..479093 | TCONS_00060258-exon-scaffold_339-1491911889:478973..479093 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1510915933:478973..479093 | TCONS_00060258-exon-scaffold_339-1510915933:478973..479093 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1575043694:478973..479093 | TCONS_00060258-exon-scaffold_339-1575043694:478973..479093 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1491911889:480097..480246 | TCONS_00060258-exon-scaffold_339-1491911889:480097..480246 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1510915933:480097..480246 | TCONS_00060258-exon-scaffold_339-1510915933:480097..480246 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1575043694:480097..480246 | TCONS_00060258-exon-scaffold_339-1575043694:480097..480246 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1491911889:480651..480671 | TCONS_00060258-exon-scaffold_339-1491911889:480651..480671 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1510915933:480651..480671 | TCONS_00060258-exon-scaffold_339-1510915933:480651..480671 | Clytia hemisphaerica | exon |
| TCONS_00060258-exon-scaffold_339-1575043694:480651..480671 | TCONS_00060258-exon-scaffold_339-1575043694:480651..480671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:478973..480671 + |
Blast
The following BLAST results are available for this feature:
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