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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060252 ID=TCONS_00060252|Name=TCONS_00060252|organism=Clytia hemisphaerica|type=transcript|length=1379bpRun BLAST on NCBI transcript from alignment at scaffold_339:270051..274157+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060252 ID=TCONS_00060252|Name=TCONS_00060252|organism=Clytia hemisphaerica|type=transcript|length=4107bp|location=Sequence derived from alignment at scaffold_339:270051..274157+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00060252 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.980e-46 Identity = 95/320 (29.69%), Postives = 179/320 (55.94%), Query Frame = 1 Query: 88 EESIHTELFTNYNANVKPDGLINNTVQVHLDVTVLKLSFLDIRSQVLSIQTFTTLRWFDKRLMWDPKAHHDITQISVPNSLLWTPDIVLYNDADNDYTTHNEIYRTNVQIHHKGMLTWTSNIEWKANCEVDITWFPLDKQVCNLLYGSLSYTSEQLSLVLREKVRNIDGFVKRGDRNFVQSGEWDVKDINIKSVEQKFPCCRDNFSALSYTVALSRFPQFYFLYMXXXXXXXXXXXLMVFHIRPESGERLGFGITILLNITMFMTFISEKLPEKSNNRPLIG--LLFSVLFFIYSLGLALASMTTFF-SSRLGPVPHWLR 1038
EE + +LF++YN ++P +++ V VH +V + +L+ +D +Q++ + W D +L WDP + I + VP +W PDIVLYN+A D+ +T + + GM+TWT +K++C +DIT+FP D Q C+L +GS +Y ++ L++ I V D F ++ EW++ D + + K+ CC + ++ ++Y+ + R P FY + + P FL ++VF++ + GE++ I++LL++T+F+ I+E +P S PL+G LLF+++F S+ + + + + + +P W++
Sbjct: 34 EERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEG---KTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLI------IGSKVDMND--FWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVK 342 The following BLAST results are available for this feature:
BLAST of TCONS_00060252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00060252 (transcript) - C. hemisphaerica
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Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 |
