|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060245 ID=TCONS_00060245|Name=TCONS_00060245|organism=Clytia hemisphaerica|type=transcript|length=1293bp
CAGGTGTCTCATAAATGGTgggaggggttggaaaaatcttcaaattttaa
caaaCGTCTAAataaccccaaaataaggtaattaaAGATGTCAAAATGTC
GTGTATCCTAAGAAAACCTCGCCCACAAAATACTTACTAAAGAAATAGCC
GGCTACCGAAGGTTTCCTTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTA
CTGATTTCTCgcattgtttttcaattttagcgaGTGCGTCAAAAATGAAA
GAGTGTGCTTGGTCTAGACTCATTCTTTTATTGTAATCATAACAAAGCAG
ACTTTTGATTACATTGTTTGCAATATCTTGTTCTATTGTCTCTTTCAATC
CCTCGAAACTTGGTTCAATGTTTTTCTCAGAACGATGCATAGCAAGTCCA
AGGCCAACTTCTTTCCCATGATGCTCCACAAATGCACCATAATAATAAGA
TTCACCTTGAtaagttaaatatttccttgTCAAAATAGCATAGAATATCA
CCCCAAGCGAGAAAATGTCAGCCTTTTCTGTATATTTTCGATCAAAGACT
TCAGGAGCAATCCAATACATGGTACCTGCATATTTATCCATAAATTTTTC
TTCGTACTCTGAAAGGCtatcttcgttattttttaaatctcgCGTTAAAA
AGGCTCTGGAGATACCAAAATCTGCCAGCTTCATCTGCCCTTTATCTCCA
AGCAGTACGTTTTCAGGTTTGAGGTCTCGATGAACAAAATTATTGTAATG
GAGGTAAGCCATTGCTTCCAATAATTGTGACATCCAGTCAAACTTTTGTT
TCATATTGACAGGGTCACGTAATCGGGTATTCAAGTTTCCGCCAGGACAA
AACTCAATTACAAGGAGCGCTGCTATTCCTTCAAAATCGTAAGAATATAA
TTGCACAATGTTTGGGTGTCTTAAATTTATCatagaaaaaatttcattac
cGATAAGATCTTGAATCAATTTAGCTTGTTCATTACTATAGCTTGGCATT
CTACACGAAATTCTCTTTAAAGCAAACGCTTTCCCTCTTTCATCTTCAAC
TTTATAAACATCTCCAAAACTACCTTTCCCCAGCTTTTGGACAACAACCA
AATCTTGAACGGTACCATTTCTACCatcatgaatttgaaaagtcatCTGT
GAATTTCTTTGAGTGCTGCCATAAGAAGATGATGTACCCTGGCCATTCAC
AAGGCTTTGTCTTGCACTGGCCATATCATTAGGTATATCCTGtgtatctt
ttttctttttaggcattcatctactagaagaaaaaaaatgggt Run BLAST on NCBI transcript from alignment at scaffold_339:233173..238443+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060245 ID=TCONS_00060245|Name=TCONS_00060245|organism=Clytia hemisphaerica|type=transcript|length=5271bp|location=Sequence derived from alignment at scaffold_339:233173..238443+ (Clytia hemisphaerica)
CAGGTGTCTCATAAATGGTgggaggggttggaaaaatcttcaaattttaa
caaaCGTCTAAataaccccaaaataaggtaattaaAGATGTCAAAATGTC
GTGTATCCTAAGAAAACCTCGCCCACAAAATACTTACTAAAGAAATAGCC
GGCTACCGAAGGTTTCCTTCTTGCAGGTGGATTCGTTGTTGCTTCAAGTA
CTGATTTCTCgcattgtttttcaattttagcgaGTGCGTCAAAAATGAAA
GAGTGTGCTTGGTCTAGACTCATTCTTTTATTGTAATCATAACAAAGCAG
ACTTTTGATTACATTGTTTGCAATATCTTGTTCTATTGTCTCTTTCAATC
CCTCGAAACTTGGTTCAATGTTTTTCTCAGAACGATGCATAGCAAGTCCA
AGGCCAACTTCTTTCCCATGATGCTCCACAAATGCACCATAATAATAAGA
TTCACCTTGAtaagttaaatatttccttgTCAAAATAGCATAGAATATCA
CCCCAAGCGAGAAAATGTCAGCCTTTTCTGTATATTTTCGATCAAAGACT
TCAGGAGCAATCCAATACATGGTACCTGCATATTTGTCCATAAACATGTC
TTCGTATTCTGAAAGGTAatcttcgttatttttcaaATCTCGCGTTAAAA
ACGGTCGAGCAAGTccaaaatcagccatttttgcCTGCCCTCTATTACCA
AGCAGCACATTTTCAGGTTTGAAGTTTCTGTGAACAAAATTATTGTTATG
GAGGTAAGTCATTGCTTCCAGTAATTGTGACATCCAGTCAAACTTTTGTT
TCATATTGACAGGGTCACGTAATCGGTTATTCAAGTTTCCTCCAGGACAA
AACTCCATAACTAGTAATGTAGATGTACTTTCAAAATCGAAAGCATACAA
TTGAACAATATGAGGGTGTTTTAAGCAGGACATGGTATATAGCAAATTAC
CAACAACATCCTGATAAAGTTTATCATTCGAGGCGCTATTGTTTTTTGTA
TTTAAATAATGTTCAGGGGTCATTTTCCTTAAAGCGAAAACATGTTTTCT
TGCATCCTCCACTTTGTAAACATCTCCAAATGCACCCTTGTCGAGTTTAC
TGACGATGGTCAATTCCTGAAAACATCCACTTTTGCAGTCCAAGATTTGG
AAAGACATTTTTTAATTGTTCCAATTTGATTATGAGGTCCATTTAACTCA
TTCATAATACATCCATAAAttcatatttgtttttttattacttATTCAAT
CTGAAAGTGATAAGAGaaactttattagaaaaacGATCAAGAATACGAAT
TTGTATTGACAAAATATGGGGAAcagaataagaaaaaaagtacaGCAAAG
TTTAGCTGAGAGTCTGGGCCTTCAtcgtttatataaaaaaatttcgacGT
GTGTATGTACCGGACTAAACAGAAAAACAGAGAAAAGCCAGTACTAGGCC
GAGTATTTATGAAAATACAGGATCCTAgcgcagaattctattggctatta
aacaattgttgaaatcacgtgatataattgttttgattggaaatgCGCAA
TTTTGAGTGGCTAACAAATTCGAAATGGAACATATAAATACCATAATACT
CTCACTGAGTAGCTTCTCATGGGATATTTATTTGGATGGTGTAAGTTTTG
GTTAGAGAGCATGAATCTCCAGACTAGGCCAAGTCATTTAAATTGATTTC
AATATTCAGTTATCTCGTATAAAGTAAGCATAAGACTGAAAAAAATAATG
GTCAGCTATCTGGTAATAATTTAATCtataaaaattacaattatAAAAAG
CGttatgaaaaatatatcaattGTAAAAAAATTGCGTACTAAGGTACGGA
AGCCCATTAGTGCCATTTAGATTATcctttaattttttaacgacGAAACT
AAAAAAGATGACgacgaaactgaaaaaaaatgacgacgaaactaaaaaat
tgacgacgaaaatgaaaaattgacgacgaaaatgaaaaaaaattgttact
tCGTCGAACAAATTGCTTCTTGTGAATGAGATGCTGGCGATGATGAACCA
GAATAAGGATGTGATGGTGGAGATTTTTGGAACCACCGGTGTCATTGGAA
TCATTGGAACTAattaatgatgaaatcaatagtgcaaatgatgaaatcaa
tggttgGTTCTATCACCCACACAATGGATTCCATCATCTCATCATGCTAC
AGCTTTGATGgtgcaaatgatggaatcaaaggtgcaaatgatggaatcaa
tggtgcaaatgatggaatcaatggtgcaaatgatggaatcaatagtgcaa
atgatggaatcaatggtgcaaatgatggaatcaatggagcAGATTATGGA
ATAAAAGCTGTAGCATGATGAGATGATGGAATCCATTGTGCGGGTGAAAG
AATcaaccattgatttcatcatttgcACTattcatttcatcattgattag
tTCAAATGATTCCATTGACACCGGTGATTCCAAAAATCTTCTGATTCATC
ATTGCCAGCATCTTATTCACGGGCTTCTTCACCAGGATTGCattaaggac
atgttttttttgactgtaccaaaatcaggttttcgaaaatcgtgaaaatc
actttattttaattatttcgtcattcgcatgatgaattttcccaaaattt
tgatatgtattgatatttgggaagggctttaaaatgagctatttgaaatc
tcaaaattcggagtatttcaggattaattaatcataGAGTGTTTTGGATC
ATATCTCACTCCATGACTCATTATTCGGTCCTGAGGAGGTTTCTATGCAT
TCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNgtaatttttttaaaggccggagtgagttat
gatcaaaacaaacaaaggacttttttaatcatttttcactcattttaaca
ATTCCCGTTTTCTTTAGTTCATTCCTTTcttatcaaccaaacaaaaatct
caaatcacttccccgatagatagacttgtcaggaaaatatatacgattag
aattagcacctagatttcaaaaatgatcaatttgatcccNCAATATTTTA
AATTATCtatgtagcaagatggtggaCTAAGGTGTAAAAGTACAGACGAA
AGATTCCACAAAAAATTGGCTCcatcaaattcaacaatttatcatttaaa
aagTAAAGATGACGAAAAACAACTAAGCAATTTTCAAGCGGTTGGTTCAG
AGCATCAATGATAAAGTTAGGAGGGCTTTCTTACTGGAATTCACGAAGAG
AAGCTGAATACAAACAAACGAAAGAAGTAAAACTAAAGAAACACATTTAT
CAGCCTTCCATTTTGGCTTCTATGAAAGCCCTTCAAATTGTTTAATCTGA
TATGGTCCACAACAAATAAAAATGGAGCCCTTAACTTACATAGtacttat
atatttttaataagCAACCCCAATTTTCGGCTCAAGGCTAAGGTTGCTTA
GAATTCTATctcaatttcaaagaaattagCTTTGACCATCCATTATATTA
TACCATAATTATACCGTTTGTCATGGTTAGTTGATCTAAATATAGTTTTT
ACTTCAGGAGATAGTAAAGAAATTTGCTGATTTCAGGGCTCGAGGCGTAT
AATGTGTGTGACTCGAAAGAATTGTgtaatttaaaagaaatttcattttt
tataaataagaaaataaagataacACAAAATTCTCACTGAACCAAATATT
TCTTCTCCTCATTCCTTTCATCCTCGTTTTTCGttcctgaaaaagaaaat
caaattctttATAAATAGGAAGGAAGTAGGGTAAGTAGGTAGGTATTTCA
CACATAGAAATTGTAAAGGTAAAGAATCGAAGTTTTCGATGAAGAGATtt
agaagtaaaaaaaactctGCAAAAAGGTCTGAAAATCGaccagatttcaa
aaaatgtttgctGTTCAACTTGTCTTTATAACAAATCTCACCAAGAAAGG
TACAACAGCAGGATTTTTTGTCAGCCTGCCCATCTTGGAAAGGAGCTTCA
GTATACAACGAAGAGGTTCTTGAATGAGAAGATTTCATGGATATGGCATC
TTCTTGTAAATAGTGCTTTGCATCTTCAAGAACTTTCTGCGCTCGGTTAA
GACTTATTCTTTCTTCTTCACGAAAACATAACATTTCAGTCACCATGCCA
ACAACCAACTTCTCCGCCTCACTTTTCAATCCGTCAAAGGAAGGCAGGCG
TGTTTTCTCAGAACGATGCATAGCAAGACCAAGGCCAACTTCTTTCCCAC
GATGATTCACAAATGCACCATAATAAGATTCACCTTGAtaagttaaatat
ttccttgTCAAAATAGCATAGAATATCACCCCAAGCGAGAAAATGTCAGC
CTTTTCTGTATATTTTCGATCAAAGACTTCAGGAGCGATCCAATACATGG
TACCTGCATATTTATCCATAAATTTTTCTTCGTACTCTGAAAGGCtatct
tcgttattttttaaatctcgCGTTAAAAAGGCTCTGGAGATACCAAAATC
TGCCAGCTTCATCTGCCCTTTATCTCCAAGCAGTACGTTTTCAGGTTTGA
GGTCTCGATGAACAAAATTATTGTAATGGAGGTAAGCCATTGCTTCCAAT
AATTGTGACATCCAGTCAAACTTTTGTTTCATATTGACAGGGTCACGTAA
TCGGGTATTCAAGTTTCCGCCAGGACAAAACTCAATTACAAGGAGCGCTG
CTATTCCTTCAAAATCGTAAGAATATAATTGCACAATGTTTGGGTGTCTT
AAATTTATCatagaaaaaatttcattaccGATAAGATCTTGAATCAATTT
AGCTTGTTCATTACTATAGCTTGGCATTCTACACGAAATTCTCTTTAAAG
CAAACGCTTTCCCTCTTTCATCTTCAACTTTATAAACATCTCCAAAACTA
CCTTTCCCCAGCTTTTGGACAACAACCAAATCTTGAACGGTACCATTTCT
ACCatcatgaatttgaaaagtcatCTGTGAATTTCTTTGAGTGCTGCCAT
AAGAAGATGATGTACCCTGGCCATTCACAAGGCTTTGTCTTGCACTGGCC
ATATCATTAGGTATATCCTGtgtatcttttttctttttaggcattcatct
actagaagaaaaaaaatgggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060245-exon-scaffold_339-1491911889:233173..233740 | TCONS_00060245-exon-scaffold_339-1491911889:233173..233740 | Clytia hemisphaerica | exon |
| TCONS_00060245-exon-scaffold_339-1510915933:233173..233740 | TCONS_00060245-exon-scaffold_339-1510915933:233173..233740 | Clytia hemisphaerica | exon |
| TCONS_00060245-exon-scaffold_339-1575043694:233173..233740 | TCONS_00060245-exon-scaffold_339-1575043694:233173..233740 | Clytia hemisphaerica | exon |
| TCONS_00060245-exon-scaffold_339-1491911889:237719..238443 | TCONS_00060245-exon-scaffold_339-1491911889:237719..238443 | Clytia hemisphaerica | exon |
| TCONS_00060245-exon-scaffold_339-1510915933:237719..238443 | TCONS_00060245-exon-scaffold_339-1510915933:237719..238443 | Clytia hemisphaerica | exon |
| TCONS_00060245-exon-scaffold_339-1575043694:237719..238443 | TCONS_00060245-exon-scaffold_339-1575043694:237719..238443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:233173..238443 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00060245 vs. Swiss-Prot (Human)
Match: PDK1L (Serine/threonine-protein kinase PDIK1L OS=Homo sapiens GN=PDIK1L PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.380e-28 Identity = 86/288 (29.86%), Postives = 144/288 (50.00%), Query Frame = -1
Query: 373 VVQKLGKGSFGDVYKVEDERGKA-FALKRISCRMPSYSNEQAKLIQDLIGNEIFSMINLRHPNIV--------------------------QLYSYDFEGIAAL---------LVIEFCPGGNLNTRL--RDPVNMKQKFDWMSQLLEAMAYLHYNNFVHRDLKPENVLLGD--------KGQMKLADFGISRAFLTRDLKNNEDSLSEYEEKFMDKYAGTMYWIAPEVFDRKYTEKADIFSLGVIFYAILTR-KYLTYQGESYYYGAFVEHHGKEVGLGLAMHRSEK 1095
+++++G+GS+G VY+ + A A+K+I C P E +L L S I +HPN++ QL +G A V++FC GG++N L R P N K +M QL A+A+LH N +HRDLKP+N+L+ + +K+ADFG+S+ + +N E+ +S + F+ GT +++APEV++ YT KADIF+LG+I +A+L R ++ + + G++V+ + V +G A+ + K
Sbjct: 10 LIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAP----ENVELA--LREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKP-NRKTNTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSKV-CSASGQNPEEPVS-VNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVGEALLENPK 288
The following BLAST results are available for this feature:
|
