TCONS_00060242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060242
Unique NameTCONS_00060242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060242 ID=TCONS_00060242|Name=TCONS_00060242|organism=Clytia hemisphaerica|type=transcript|length=1306bp
ctAGATTCTCTTAAAGGTATCTATTAGCATCTATTTGAGAGTGGacacag
aaaaaatttaaaatgacaGATGATGGCATTGTGGCACATTTTAAAGAACT
TCAGCAAGAGAAAAAGAAGCTTCAAAACCGTCTTGACCACTTTCGATTCA
GAAGGAAAGATTTAGAATCAAAACAAGGCTCAGattACAGAATGAGAATG
ACGAACATCAGGCATACATCAAACTCGTTAAAACTTCTCTCCAAAAAGAA
GAGGATACAAAAGACACCTACCTgatAAAATTACAGAATCAGTTTGATGA
ACTATCAAATGATTTTAGAGGTGCAAAAAAGTTTTACGAGGATGAGGAGC
TGGAAAAAGAGGTCGAACATTGGAAAAACACCTGCCAAAGGAGAAAGATC
AGTATTGAAACTGGTGCCGAATTGGTGAATCAGATTTCTTCTCAattgaa
agaaatgaatttaTCAAAGActGACTCAGACGAAAAACCTGCGAAGAGTT
CTTGGAAAGAAGTGAATACCCATCAAGACTTTCTTACGAGCTTATTTCAA
GAAGATTTCTCAAAGCTAGAAAGCCTGATAACACAAGAACAAAACAAATC
CCAACATTTAGGGGAACGTATAACAGTCGTAATGGAGCAACTGAAGACCA
AACAAGACGAACTGaaaaaaatacacaacacaaatGTCTGAAGCAGGAAT
AAACTCTCTTTTCTTCTGAGTTGTCTCACTATCATTGGTCGGTGGTAAGT
CAGGGTGGCTTCTCTGTGAGACAAATTTCATCTGGTATAGTATACATAAT
ACCATGTTTAATTATTGTATATAGATTTTTTTGGCTCCACGAACTATGTT
ATCCTTGTGTATGTTTGTATAGTTTGTGTTATATTACAATTCTTTAATCC
ATCGAATCTCTGATATCGCTTCAtttcatcttttgttttaaaattctgGG
AAAATTCATCTATAAGGCTCAAAATTGTAGTTTATGATTTAACAGAACAT
ATATCTTTTGCAGCTAGtcagtcaatcaatcaattCTAGAGACGAAACGT
AACCAGCTGTCGCTTGCACTGAATACAATTTGGTTGAATGCATAAAGGTT
TCCTCTACTGATCCATATGACATTATTTCAGCTTCCATCGAACTGTTAGT
ATCATTTTTAAGGTCTGTGTTCATTGTTTGGCCTCATGGGGCGGCCTATT
TCCTTATGGATATACATTAACACTGTTGATGAGGCTTTCGATTTCTTCCG
CTTCGCTCTCTTCAAGTTGTCGCACGACATCCACAACTGACAAAGGGTGT
GGtact
Run BLAST on NCBI

transcript from alignment at scaffold_339:189800..194674+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060242 ID=TCONS_00060242|Name=TCONS_00060242|organism=Clytia hemisphaerica|type=transcript|length=4875bp|location=Sequence derived from alignment at scaffold_339:189800..194674+ (Clytia hemisphaerica)
ctAGATTCTCTTAAAGGTATCTATTAGCATCTATTTGAGAGTGGacacag
aaaaaatttaaaatgacaGATGATGGCATTGTGGCACATTTTAAAGAACT
TCAGCAAGGTGGGTAGCATTATCTTGATTTATcaactaacttttttttgc
aACTCTAGTCATCTCTATCATGCGTTTTTTGCTAATAAtatgaaattcaa
aatatagAACTTCTCCTCATTCCACCATACTCTGGTTTTGAGCTAtgttt
ttttaaacataatCCAATCAGAATCAAGTTAAGTTCAGTTCTTCTTTATC
GACAAAGATTTGTAATAACATTTTTATAGGGGGGGGGACATTCAAGTCCT
GGAGCCATACAGTAATATGTTGTGATATTATTCATTTTAGTCTTTTTTCT
TAGAGAAAAAGAAGCTTCAAAACCGTCTTGACCACTTTCGATTCAGAAGG
AAAGATTTAGAATCAAAACAAGGCTCAGGTATCATTTCGAAGAGTATAGT
TGTATTATATATTCTGGtactattattatttttttaaatttccataAGCG
AAACCAACTCTGGATTGCTCAGAAATTTAGTATTTAATAGATTCTGTTTT
GTTTACTCCGATTTGTGTTCACTTGCCTGAtaaaatgggctgttccatta
aatttccatataggggggtggacaaacctttttaaggcaaaaaaggttCT
TAGAAATTACCTACCTCTTagaaaccccctggaaaatggcaaaagttGTA
AAAGAAgccttgaaaaattcttttcatacatTTAacgtgagggtggacga
actaaaatcagtcttttacccctggaaattttagaataaacttctacctc
ctggaaaaatgaaaaatactcGTTTAgacccccctggaaatgtttgtcca
ccccctgtatggatataaaatggaatagcccaatgacTAGCCCTTTTTGC
AATAACTTTGAAAGTTTTATTGTgtactttttcttattttagtcACAGAC
AAAAACAGATTACTCCAACAGAAGCATGATAATATGTCAAGTTAGTGTTT
TTTCAGACAAAACTTTTAGCTTTTAAGTACataatgtttcatttttttca
tgtttcaaattttaatgtatATGTGTTTACCAGTTGATGCCGTGCAATTT
TGAGTTTGTTAAAGAAGCACACTTTTACTTAGTGTATATACAACACTTTG
TCTTTAGTCTAGTTTCAGTTTCAATACAGTCATTTCTTTGCTTTTGTATT
ATACAGGAACAATTGAAATAGCTAAAAGAAAATTGCAAGAGTCCCAATTA
CAAGTTGAGAAGTAGGTTTTTTGCAGTTTCTTTAGTCGTTTTTCAGAAAG
ACTAAATCGCATATTCAGTATCAAGACTTGATTGTTTATTGTCTTGCTCA
GGGTATCAGAAAATAAATTATCAGTCGATTTGAGGACATGAAGTATCTGT
TAAAAATGCCCTTGCCTTTGTTAATGACCTTGAAAATTCAAGATTACTTT
TCCAATGGGCTATTctagaaatagtctgtaccccctatgttagGTGTGAC
ATTCaaggtggtctggaaaataaaaaatccaggtctggatttttgaatga
taaaatccagttggtcagtaaaatcgggttaaaaatccagggtgaccagt
ataacgaggtcgaaaatccagcGTGGTCCAAAGAATTGGGATAAAAAAAT
CCATGGGGGTCCTgaataaaatccaaaaaaaagatCTCAACAtaaggggt
acaaattttttctggaatagcccattgatATATGTAtgttttcttctttg
tttttagattACAGAATGAGAATGACGAACATCAGGCATACATCAAACTC
GTTAAAACTTCTCTCCAAAAAGAAGAGGATACAAAAGACACCTACCTGta
cattttttttaacaaagttgTGAATGAGCTTTTtattgggaaaatgtttt
tcaaaacaaaagcaagGGATTTAATTTATTACATACTTTGTCAAATATTG
ATAAAAAGCCATTACCACCCCTTTTCCATTGCATTGTTGATGTGATAGAC
ACCCTTACTCAGTTTTCCAATTTAATATTGTCTTTTTATGATGaatagtt
tttttgttttcaggatAAAATTACAGAATCAGTTTGATGAACTATCAAAT
GATTTTAGAGGTGCAAAAAAGTTTTACGTGAGTGtaataaatcatttttg
agaaGCGATTTTCTTTGTTAGGAGGATGTTTTTGTTACTGATTATACCTT
CAGGATTAATAATTTCTTGCTTTTAATTTTGCTGATCGATTTTGCTTTGT
TGTCAGAACATGATTCAACGATTTCATGTGAAGTCGAGCATTTGATTGAG
CAGTATTACTTCTTTTCTCATAAATTATTCACTTTTCCTCGTATAGGAGG
ATGAGGAGCTGGAAAAAGAGGTCGAACATTGGAAAAACACCTGCCAAAGG
AGAAAGATCAGTAGTAAGAACCATTTTTCTAAATCAACCCCTAAAAATGA
GGGTTGCCACTTTTTGATAATGAAGACAGGGAAAGTTCTcttattaaaat
aataactcaCATTTAGAACCTTCAAATTCTTTGGGAAAGTATCATTTATT
CCTACTGATAATTATCTTTTATCGTAGAATTTATATATATGATGGCTGAC
AAAATGTGTTTGGAGTAATGCCGTTTTTCCCTATTTTGCAATTAATTTTG
TGACGTGTAAATAATTTTCAACAGGGGGATTCGACCATTcgtaatttgaa
taaaaaagacaGAAAACAGTTGCTTCTGAATGAAACAATTCCCCCTAATA
AAGGTGCCGCAAGctaaaatcgctagcgaaaaaaaAAACGCTGCAAATAT
GACTTCAGACACGTACGGCTATTATTATATAGATAAAAATAgatataaaa
aaatccaaaatcatTGGCGCTTTTCGagatttcttcatttctttctttaa
cCAAATACTGCTCTAACGGTACTTATTCTAATACTTATTTCTACCCTAGA
TAAGAACTTTAATCGTCTAGCTCCTGTTGATGCGTTTAAGTAAGAAAACC
AATTATTGTGGATTTATTTTTAGTTGAAACTGGTGCCGAATTGGTGAATC
AGATTTCTTCTCAattgaaagaaatgaatttaTCAAAGAGTAAGAAATCA
CTGCTTTTTATACATTAATCTCCCataattttcaataaagactTTTTAGT
CGAATTTTGATTTCTGTTTATTcgtttgtttcgaattttaaaggttttgg
ttGCACAAGTTTATAGTTCTTCTCCTCATAAATCAGTTATGTAATGaagt
aaatttatttttagctGACTCAGACGAAAAACCTGCGAAGAGTTCTTGGA
AAGAAGTGAATACCCATCAAGACTTTCTTACGTAGGTGGTCTGTCCTTAT
ATCTGAATAACGCGATTAAGAAATTTTATCAACAAATGCTCTAAAATTTC
TTCGAAAATGGTTTGAAGCCTTAcatgatgtttttgaaaatgtgttcTAT
TTTTGCCAGAAAGGGATTTATTAGGCCAAAATAAAAATAGTGTTGAAGGT
CAGAGTCCTCACGTTGAAATAGTTTTTATTGTGGGAACTCCATGGGGGGT
ATCGACTTTCTTCGTTTAATACGAGAGTTGAATCCTGATTAAGATGCAAT
AGAGTTTGACGGTTGGTTTTAATAGTTTTTATTTAAGATCGTTCTAGGGG
ATTTCGATTATCCCTTGTTTAGTTCTGATTGAAGCTTTTGGGTTCATTTT
CTGAGTTCTTTCTTTTGTCTTcttgattttttccttattaCAATAGGAGC
TTATTTCAAGAAGATTTCTCAAAGCTAGAAAGCCTGATAACACAAGAACA
AAACAAATCCCAACATTTAGGGGAACGGTTTGTTATTTATCTTATGTTAA
AATCTTTGTTTCATCATCCAAAACTTGACTTTATATCCATTATGTTTTCC
TTTTTGATCAAAAAAGatccaaaaaattataaaaagtaaagtgtgaaaac
aaaagaatgaaaaacttataagaaaaaataatgtcaaaaaaatacaaaag
gcAGTATTTACATAATTCATGAGGcatcttttccttttttttattatttg
caatattttcacttttaatGTAAGGAGAGGAAAATCAATATACCATATTT
CCCTCGGCTACTTTGTCCCTTTCTTTTCTCCCCTCAGTATAACAGTCGTA
ATGGAGCAACTGAAGACCAAACAAGACGAACTGaaaaaaatacacaacac
aaatGTCTGAAGCAGGAATAAACTCTCTTTTCTTCTGAGTTGTCTCACTA
TCATTGGTCGGTGGTAAGTCAGGGTGGCTTCTCTGTGAGACAAATTTCAT
CTGGTATAGTATACATAATACCATGTTTAATTATTGTATATAGATTTTTT
TGGCTCCACGAACTATGTTATCCTTGTGTATGTTTGTATAGTTTGTGTTA
TATTACAATTCTTTAATCCATCGAATCTCTGATATCGCTTCAtttcatct
tttgttttaaaattctgGGAAAATTCATCTATAAGGCTCAAAATTGTAGT
TTATGATTTAACAGAACATATATCTTTTGCAGCTAGtcagtcaatcaatc
aattCTAGAGACGAAACGTAACCAGCTGTCGCTTGCACTGAATACAATTT
GGTTGAATGCATAAAGGTTTCCTCTACTGATCCATATGACATTATTTCAG
CTTCCATCGAACTGTTAGTATCATTTTTAAGGTCTGTGTTCATTGTTTGG
CCTCATGGGGCGGCCTATTTCCTTATGGATATACATTAACACTGTTGATG
AGGCTTTCGATTTCTTCCGCTTCGCTCTCTTCAAGTTGTCGCACGACATC
CACAACTGACAAAGGGTGTGGtact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037895XLOC_037895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060242-exon-scaffold_339-1491911889:189800..189907TCONS_00060242-exon-scaffold_339-1491911889:189800..189907Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:189800..189907TCONS_00060242-exon-scaffold_339-1510915933:189800..189907Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:189800..189907TCONS_00060242-exon-scaffold_339-1575043694:189800..189907Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:190203..190277TCONS_00060242-exon-scaffold_339-1491911889:190203..190277Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:190203..190277TCONS_00060242-exon-scaffold_339-1510915933:190203..190277Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:190203..190277TCONS_00060242-exon-scaffold_339-1575043694:190203..190277Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:191607..191696TCONS_00060242-exon-scaffold_339-1491911889:191607..191696Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:191607..191696TCONS_00060242-exon-scaffold_339-1510915933:191607..191696Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:191607..191696TCONS_00060242-exon-scaffold_339-1575043694:191607..191696Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:191913..191976TCONS_00060242-exon-scaffold_339-1491911889:191913..191976Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:191913..191976TCONS_00060242-exon-scaffold_339-1510915933:191913..191976Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:191913..191976TCONS_00060242-exon-scaffold_339-1575043694:191913..191976Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:192196..192262TCONS_00060242-exon-scaffold_339-1491911889:192196..192262Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:192196..192262TCONS_00060242-exon-scaffold_339-1510915933:192196..192262Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:192196..192262TCONS_00060242-exon-scaffold_339-1575043694:192196..192262Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:192873..192938TCONS_00060242-exon-scaffold_339-1491911889:192873..192938Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:192873..192938TCONS_00060242-exon-scaffold_339-1510915933:192873..192938Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:192873..192938TCONS_00060242-exon-scaffold_339-1575043694:192873..192938Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:193114..193180TCONS_00060242-exon-scaffold_339-1491911889:193114..193180Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:193114..193180TCONS_00060242-exon-scaffold_339-1510915933:193114..193180Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:193114..193180TCONS_00060242-exon-scaffold_339-1575043694:193114..193180Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:193596..193676TCONS_00060242-exon-scaffold_339-1491911889:193596..193676Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:193596..193676TCONS_00060242-exon-scaffold_339-1510915933:193596..193676Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:193596..193676TCONS_00060242-exon-scaffold_339-1575043694:193596..193676Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1491911889:193987..194674TCONS_00060242-exon-scaffold_339-1491911889:193987..194674Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1510915933:193987..194674TCONS_00060242-exon-scaffold_339-1510915933:193987..194674Clytia hemisphaericaexon
TCONS_00060242-exon-scaffold_339-1575043694:193987..194674TCONS_00060242-exon-scaffold_339-1575043694:193987..194674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_339supercontigscaffold_339:189800..194674 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.78151	1.81227	1.19341	0.755141	2.18425	0.482367	2.82714	1.97636	0.426071	1.24258	1.63082	1.1886	0.441642	0.218693	0.589156	1.2482	1.66004	1.3904	0.408189	0.107316	0	0	2.94642	3.35465	1.80255	0.244415	0	0.82124	1.19712	1.11701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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