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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060228 ID=TCONS_00060228|Name=TCONS_00060228|organism=Clytia hemisphaerica|type=transcript|length=1912bp
ttgtaCCTCCATGGTCATAGTTTCGTAATGCAAGAGGTCAGTTTTGCTTT
ATTTCGGAACTATTTACGATATGCACTGTTGCAATGATTCTGAGTTCGGT
CGTAACTGATGTAAGATCAGTCAaaacgtcacttgcaaccaatcagctgt
ttggtccgtgatgtaatgtcagaagacgtTGAAGAGATACCTGTCATGAC
TACGTCAACTCTGAATAAAGTTAGCTCTTGTTTGACAACTTTTCATTTCG
TTTCGTTACAGTATTTGCGCCTGGAAGGCCCGTATACTGGTATGACTGGA
TCTTAAGCCCTCTCTACACCTCACACTTATCTAAACCTGGCGCAGATCCC
AGTCTACACGTAATTTAGATGAAATCatctcaatgaaagaaaatagaCAG
ATGTTACCAAACCTGAGATTCACTGGTTGTTATATGGATTAAGACTAGTc
agtgtttttaatgaaatgcTTGTCGTCCTTGAGGATGTCGATACAGTACT
ATGAATCACGGCAACATCCACTCTTTTGGTGACCGACATCCAGTAGCATT
GTCTTTTGGTGACCAACATCCAGTAATATTGTCTTTTGGTGACCAACATC
CAGTAGTATTGTCTTTTGGTGACCGACATCCAGTAGTATTGTCTTTTGGT
GACCGACATCCAGTAGTATTGTCTTTTGGTGACCGACATCCAGTAGTATT
GTCTTGGTAAGAAAAACCTAATTTATGCATTCCCCTTCCAATGACCACAT
CCTTCAAATCATCAACACACCATGCAAcctttttttatgaatatttttta
caccttttatGTTTTATATCACCAATCAGCTTTCCACaacttttaatcat
ttttatatCCCACCCACAGATATCATATATAAAATACTACAGGTGGTCTT
ACCTTTCCCAGGTCAtggcaggtgaagcaaaataaagcgTCATTTGTTAT
GAAAGTTGACCTTGTTTTCACTTTTGATACTACCGCtacttcaaaaaatt
tcatagcTCGCGCAAGCAAAAATTGTGACGTTATTATACTAAAGATGGCG
CATCATTTTGCTTTAGTTAGGGACGGAGAAGCTACATCTggtattttata
tattttatctGTGACTCTGCCCTACAAATGGCATATTATTCTCAATCTAT
TTGCATCCgaataaaatttatcaaaggaGAATTCTCGTGTGAgttaaaaa
caacaaactttAAACTAGATTTACACTATGTTGCTTTTGGTTTCGTCTCC
AATCCTTTAATGAATTCCGGTGAGTTTTAGCCCTTTTAACCCTAATTGTG
TAATGTATTAGAAAGTTTTACTGAAGAAAAGTATcagtatttttttcaga
aattattttacgtttatttttctgtaaattatttttctataaCCTCTTAA
AATTCTGTagtaattttattgtttttattttattttttaattttggtatt
TAGTTGGTATTCTGGAATTTTCTGTTTTATCTTTTTCTGTTTCTTTTCTA
AAACTTAACGAGATTTTGGATATATTCGACTCTCTCCAATTCGATTCTTC
AAGGGGCCAAGAAATTtcctcgaattagagaaagatttgaattacagCAG
AGAGGACCCATTTttcagttcgaattacagaaagatccGAATTATAGAGA
GAGTAATAGTAATCGAGTTTTTTGAAGTGGAAATCGTCAATGCTctcaaa
tttaaatatttaaatgtaaaattaaaaattatttcagcGAGCGAGCAAAG
GATATTATGGTCATAAAATTTAATGCAAAGAGTCACATTGAAAGCATTTA
TGAGAAAGGAAGTATATATCATAATATCTCTCGCTTTTtgtattaaaatt
tttttttttgttaccaaaattttctgttgtttttgtattgccgaatattt
ttaaagtttttg Run BLAST on NCBI transcript from alignment at scaffold_338:36232..38143+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060228 ID=TCONS_00060228|Name=TCONS_00060228|organism=Clytia hemisphaerica|type=transcript|length=1912bp|location=Sequence derived from alignment at scaffold_338:36232..38143+ (Clytia hemisphaerica)
ttgtaCCTCCATGGTCATAGTTTCGTAATGCAAGAGGTCAGTTTTGCTTT
ATTTCGGAACTATTTACGATATGCACTGTTGCAATGATTCTGAGTTCGGT
CGTAACTGATGTAAGATCAGTCAaaacgtcacttgcaaccaatcagctgt
ttggtccgtgatgtaatgtcagaagacgtTGAAGAGATACCTGTCATGAC
TACGTCAACTCTGAATAAAGTTAGCTCTTGTTTGACAACTTTTCATTTCG
TTTCGTTACAGTATTTGCGCCTGGAAGGCCCGTATACTGGTATGACTGGA
TCTTAAGCCCTCTCTACACCTCACACTTATCTAAACCTGGCGCAGATCCC
AGTCTACACGTAATTTAGATGAAATCatctcaatgaaagaaaatagaCAG
ATGTTACCAAACCTGAGATTCACTGGTTGTTATATGGATTAAGACTAGTc
agtgtttttaatgaaatgcTTGTCGTCCTTGAGGATGTCGATACAGTACT
ATGAATCACGGCAACATCCACTCTTTTGGTGACCGACATCCAGTAGCATT
GTCTTTTGGTGACCAACATCCAGTAATATTGTCTTTTGGTGACCAACATC
CAGTAGTATTGTCTTTTGGTGACCGACATCCAGTAGTATTGTCTTTTGGT
GACCGACATCCAGTAGTATTGTCTTTTGGTGACCGACATCCAGTAGTATT
GTCTTGGTAAGAAAAACCTAATTTATGCATTCCCCTTCCAATGACCACAT
CCTTCAAATCATCAACACACCATGCAAcctttttttatgaatatttttta
caccttttatGTTTTATATCACCAATCAGCTTTCCACaacttttaatcat
ttttatatCCCACCCACAGATATCATATATAAAATACTACAGGTGGTCTT
ACCTTTCCCAGGTCAtggcaggtgaagcaaaataaagcgTCATTTGTTAT
GAAAGTTGACCTTGTTTTCACTTTTGATACTACCGCtacttcaaaaaatt
tcatagcTCGCGCAAGCAAAAATTGTGACGTTATTATACTAAAGATGGCG
CATCATTTTGCTTTAGTTAGGGACGGAGAAGCTACATCTggtattttata
tattttatctGTGACTCTGCCCTACAAATGGCATATTATTCTCAATCTAT
TTGCATCCgaataaaatttatcaaaggaGAATTCTCGTGTGAgttaaaaa
caacaaactttAAACTAGATTTACACTATGTTGCTTTTGGTTTCGTCTCC
AATCCTTTAATGAATTCCGGTGAGTTTTAGCCCTTTTAACCCTAATTGTG
TAATGTATTAGAAAGTTTTACTGAAGAAAAGTATcagtatttttttcaga
aattattttacgtttatttttctgtaaattatttttctataaCCTCTTAA
AATTCTGTagtaattttattgtttttattttattttttaattttggtatt
TAGTTGGTATTCTGGAATTTTCTGTTTTATCTTTTTCTGTTTCTTTTCTA
AAACTTAACGAGATTTTGGATATATTCGACTCTCTCCAATTCGATTCTTC
AAGGGGCCAAGAAATTtcctcgaattagagaaagatttgaattacagCAG
AGAGGACCCATTTttcagttcgaattacagaaagatccGAATTATAGAGA
GAGTAATAGTAATCGAGTTTTTTGAAGTGGAAATCGTCAATGCTctcaaa
tttaaatatttaaatgtaaaattaaaaattatttcagcGAGCGAGCAAAG
GATATTATGGTCATAAAATTTAATGCAAAGAGTCACATTGAAAGCATTTA
TGAGAAAGGAAGTATATATCATAATATCTCTCGCTTTTtgtattaaaatt
tttttttttgttaccaaaattttctgttgtttttgtattgccgaatattt
ttaaagtttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060228-exon-scaffold_338-1491911889:36232..38143 | TCONS_00060228-exon-scaffold_338-1491911889:36232..38143 | Clytia hemisphaerica | exon |
| TCONS_00060228-exon-scaffold_338-1510915933:36232..38143 | TCONS_00060228-exon-scaffold_338-1510915933:36232..38143 | Clytia hemisphaerica | exon |
| TCONS_00060228-exon-scaffold_338-1575043694:36232..38143 | TCONS_00060228-exon-scaffold_338-1575043694:36232..38143 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_338 | supercontig | scaffold_338:36232..38143 + |
Blast
The following BLAST results are available for this feature:
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