TCONS_00060192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060192
Unique NameTCONS_00060192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060192 ID=TCONS_00060192|Name=TCONS_00060192|organism=Clytia hemisphaerica|type=transcript|length=513bp
CGAGTGCTACGGGAATCACTGCTAACTTCTTCAATGTCACGAGCGCCTCA
TCAAGCGCAAGGGTGGTAAAGTTAGGTTTAGCTCTGAGCACAATGTTACC
AAGCTGTTCCTCTGTGCATTCAAGGAGCTGACCAGATGCAACTGCATTAG
GTATGGAGGAACCAGTGCGATAAGTCTCCCAACGTCGGGTGAATGCGTTC
CAGTCCTCAGTGGTGGCGTTCATTTGAAGCTTCGGACGCTCAAGCCTGGG
AGCACGCATTGGTGCGGCACGGCCTTGGAAGGCGTTGGTAGCGTGTGTAT
GGGAGTGCACATTCAATATAGCAGCTGCACCAATCACGTCTACATCATCA
GTCATGAAACCACAGTCAGGGATGGGACACGAGAGTACAGTCATTGTGTC
AATGATACAAAACACTCATCCAATAATGTGATGTTGATCCAAACATGGAC
AAAAGTCATTCGTTGATTactttttagtgattttattgtaatttttagaa
TGTTTGGATCTAA
Run BLAST on NCBI

protein sequence of TCONS_00060192-protein

>TCONS_00060192-protein ID=TCONS_00060192-protein|Name=TCONS_00060192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MTVLSCPIPDCGFMTDDVDVIGAAAILNVHSHTHATNAFQGRAAPMRAPR
LERPKLQMNATTEDWNAFTRRWETYRTGSSIPNAVASGQLLECTEEQLGN
IVLRAKPNFTTLALDEALVTLKKLAVIPVAL
Run BLAST on NCBI

transcript from alignment at scaffold_336:91557..92069

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060192 ID=TCONS_00060192|Name=TCONS_00060192|organism=Clytia hemisphaerica|type=transcript|length=513bp|location=Sequence derived from alignment at scaffold_336:91557..92069 (Clytia hemisphaerica)
TTAGATCCAAACAttctaaaaattacaataaaatcactaaaaagtAATCA
ACGAATGACTTTTGTCCATGTTTGGATCAACATCACATTATTGGATGAGT
GTTTTGTATCATTGACACAATGACTGTACTCTCGTGTCCCATCCCTGACT
GTGGTTTCATGACTGATGATGTAGACGTGATTGGTGCAGCTGCTATATTG
AATGTGCACTCCCATACACACGCTACCAACGCCTTCCAAGGCCGTGCCGC
ACCAATGCGTGCTCCCAGGCTTGAGCGTCCGAAGCTTCAAATGAACGCCA
CCACTGAGGACTGGAACGCATTCACCCGACGTTGGGAGACTTATCGCACT
GGTTCCTCCATACCTAATGCAGTTGCATCTGGTCAGCTCCTTGAATGCAC
AGAGGAACAGCTTGGTAACATTGTGCTCAGAGCTAAACCTAACTTTACCA
CCCTTGCGCTTGATGAGGCGCTCGTGACATTGAAGAAGTTAGCAGTGATT
CCCGTAGCACTCG

Coding sequence (CDS) from alignment at scaffold_336:91557..92069

>TCONS_00060192 ID=TCONS_00060192|Name=TCONS_00060192|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_336:91557..92069 (Clytia hemisphaerica)
ATGACTGTACTCTCGTGTCCCATCCCTGACTGTGGTTTCATGACTGATGA
TGTAGACGTGATTGGTGCAGCTGCTATATTGAATGTGCACTCCCATACAC
ACGCTACCAACGCCTTCCAAGGCCGTGCCGCACCAATGCGTGCTCCCAGG
CTTGAGCGTCCGAAGCTTCAAATGAACGCCACCACTGAGGACTGGAACGC
ATTCACCCGACGTTGGGAGACTTATCGCACTGGTTCCTCCATACCTAATG
CAGTTGCATCTGGTCAGCTCCTTGAATGCACAGAGGAACAGCTTGGTAAC
ATTGTGCTCAGAGCTAAACCTAACTTTACCACCCTTGCGCTTGATGAGGC
GCTCGTGACATTGAAGAAGTTAGCAGTGATTCCCGTAGCACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037865XLOC_037865Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060192-proteinTCONS_00060192-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060192-exon-scaffold_336-1491911889:91557..92069TCONS_00060192-exon-scaffold_336-1491911889:91557..92069Clytia hemisphaericaexon
TCONS_00060192-exon-scaffold_336-1510915933:91557..92069TCONS_00060192-exon-scaffold_336-1510915933:91557..92069Clytia hemisphaericaexon
TCONS_00060192-exon-scaffold_336-1575043694:91557..92069TCONS_00060192-exon-scaffold_336-1575043694:91557..92069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:91557..92069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233406	0	0	0	0.314761	0.373093	0	0.421398	0.491717	0.365443	0	0.155447	0.155231	1.04786	0.265072	0.64004	0.262826	0.359184	0	0.259635	0.22567	0	0.133809	0.121652	0.375897	0.111826	0.160023	0	0.129531	0.131972
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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