TCONS_00060189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060189
Unique NameTCONS_00060189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060189 ID=TCONS_00060189|Name=TCONS_00060189|organism=Clytia hemisphaerica|type=transcript|length=507bp
TTTCAAACTTGACGTTAATTCTTTAGAATAAGGAGGTACTCAAAACTTCA
AGACAAAAAAGCATAGATGAAATGAATTACAACCTATAGACATCAATACa
taattttttggcatttttcatcCTCTTTGACATGATTTAGTTGTATAATT
CATTTCTGGTTCCAGTATTTTTTACTGGACTTTTCTATTGGCAAGGTCAA
TTTTTTTGagctaaaatctttttttgtcttttcgaCAGGAGGAATCTTTG
AGCCTAGCTGGCATAGTGAAAATCCTTTACAACCTATCAATAtttataca
tcgttggaaagaGCTAGAACTGATCTTTCTTTCTATATATTTGTATAATT
AAAAGGCAGATTTCTCCTACGTCTCTTTAAACCCTGAAAGTTTGTCAATT
TTCGTTAAACATGGGAAAAAACATGTCTTTTTACAGAATACTGAATCTTT
TTATCAAGAATCAACTCACAGACAAATTTAGTATTGCCAGAGAGAAGAAA
GATCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_336:43619..44125

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060189 ID=TCONS_00060189|Name=TCONS_00060189|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at scaffold_336:43619..44125 (Clytia hemisphaerica)
TCTGATCTTTCTTCTCTCTGGCAATACTAAATTTGTCTGTGAGTTGATTC
TTGATAAAAAGATTCAGTATTCTGTAAAAAGACATGTTTTTTCCCATGTT
TAACGAAAATTGACAAACTTTCAGGGTTTAAAGAGACGTAGGAGAAATCT
GCCTTTTAATTATACAAATATATAGAAAGAAAGATCAGTTCTAGCtcttt
ccaacgatgtataaaTATTGATAGGTTGTAAAGGATTTTCACTATGCCAG
CTAGGCTCAAAGATTCCTCCTGtcgaaaagacaaaaaaagattttagctC
AAAAAAATTGACCTTGCCAATAGAAAAGTCCAGTAAAAAATACTGGAACC
AGAAATGAATTATACAACTAAATCATGTCAAAGAGgatgaaaaatgccaa
aaaattatGTATTGATGTCTATAGGTTGTAATTCATTTCATCTATGCTTT
TTTGTCTTGAAGTTTTGAGTACCTCCTTATTCTAAAGAATTAACGTCAAG
TTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037862XLOC_037862Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060189-exon-scaffold_336-1491911889:43619..44125TCONS_00060189-exon-scaffold_336-1491911889:43619..44125Clytia hemisphaericaexon
TCONS_00060189-exon-scaffold_336-1510915933:43619..44125TCONS_00060189-exon-scaffold_336-1510915933:43619..44125Clytia hemisphaericaexon
TCONS_00060189-exon-scaffold_336-1575043694:43619..44125TCONS_00060189-exon-scaffold_336-1575043694:43619..44125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:43619..44125 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12847	1.10398	0.745389	1.41748	0.481648	0	0.306122	0.143294	0.200647	0.497068	0.79473	0.183817	0.395891	0.32891	0	0.362737	0	0.0916039	0	0	0.230214	0.168436	0.409511	0.310925	0.511287	0.523009	0.163245	0	0.660697	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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