TCONS_00060184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060184
Unique NameTCONS_00060184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060184 ID=TCONS_00060184|Name=TCONS_00060184|organism=Clytia hemisphaerica|type=transcript|length=1432bp
GTAGACACTAAATTTTGCATCCATTTCtcagaagaaaatgaaaaataaaa
taaaacattgaaTCAACCAGAATAGAAGATTTGATTAAACCAAATAACGA
GTCAAAGCACCACGAAACAATGGAAACATCTACAATTGGAGCACTACGTG
TATCTTGTTTAGAAGTCGATTCTTTCTCTCACTCAACAAATCCTGAATAC
TTTTCAAGAGAGTTTGATGAACATACCCAACATGATGTTTTGAGGCTTAA
AAATGTTTGTTGGCTTGAGATGAAACACACTTTTAAACTGGTTAAGCGTG
GCGAATATCAGTTTGTTATGAGAATGAAGTTTGGAGAAGATTTTTACTGG
CCTTCAGGAGATGGTGGGGAAATGGTTCATATCAAGTCTTGTTGGAGGAG
CAATAAAAATGATGCCAATTTTGAAAATGCATTTAATTTTCATACCAACG
ATTGGGAAAAAATTCGAGCATATATTAATGAAGGGACACCTTTAGAAGAT
TTTCCTGCTGGCTGTTCATTTAAGAATCATGATAAAGAGTCTGGTTGGTT
TGATTTTGTAGTGGATGAACCTATCATTTTGGAAGATGATAATCAAGATG
TTTTAGTACGGTTCTCTGATACGGAGAATAATTACTGGAAAGAAGGGATG
GTGTGGGATTATATTGAGTTGGTTCCTTTTTATTGCTGAGCATAATAACA
CATTACACACATATTACATATTACACACATATTACACATTACACACATAT
TACACATTACACACATATTACACATTACACACATATTACACATTACACAC
ATATTACACATTACACACATATTACACATTACACACATATTACACATTAC
ACACATATTACACATTACACACATGTTACACATTACACACATATTACACA
TTACACACATATTACACATTACACACATGTTACacattgttttctttttg
taagaaaaacAGACAGAATATCTCGCACAATTGTTCCATGCTGGCGCAAT
ATCCAGGCAATGCACTATTTTATAGATTATTATAGAATccaaaatcagtc
agaaaatcaTTACCTAGGGATCGTGTTTTTTCAAAGCTGAggtagttttg
tttttgtttttgtttttagttttaagaattttaagcatgtaaaatttttc
tttataattttgtGTGGAATTAGGTTTATCTTCTTGTCTTCTTAAGCAAA
GTtcgttcagtcagaagtagacttcTAGTCTAGTGACAAGTGGACTAGTG
GAGATCGTCCAGCAGCACATTTACAGTAGGtgcttttaaacaaaatttta
caaagTTGTTTGATTTCTATTCCCTTCGAGTATTTATGTtgagtacactt
tttttattttggaagccttcgaatattcttaacttttttattttcaagtc
taaaaatgttcttagcatgtgcTTATTTTCAC
Run BLAST on NCBI

protein sequence of TCONS_00060184-protein

>TCONS_00060184-protein ID=TCONS_00060184-protein|Name=TCONS_00060184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
METSTIGALRVSCLEVDSFSHSTNPEYFSREFDEHTQHDVLRLKNVCWLE
MKHTFKLVKRGEYQFVMRMKFGEDFYWPSGDGGEMVHIKSCWRSNKNDAN
FENAFNFHTNDWEKIRAYINEGTPLEDFPAGCSFKNHDKESGWFDFVVDE
PIILEDDNQDVLVRFSDTENNYWKEGMVWDYIELVPFYC
Run BLAST on NCBI

transcript from alignment at scaffold_336:200502..204548-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060184 ID=TCONS_00060184|Name=TCONS_00060184|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at scaffold_336:200502..204548- (Clytia hemisphaerica)
GTAGACACTAAATTTTGCATCCATTTCTCAGAAGAAAATGAAAAATAAAA
TAAAACATTGAATCAACCAGAATAGAAGATTTGATTAAACCAAATAACGA
GTCAAAGCACCACGAAACAATGGAAACATCTACAATTGGAGCACTACGTG
TATCTTGTTTAGAAGTCGATTCTTTCTCTCACTCAACAAATCCTGAATAC
TTTTCAAGAGAGTTTGATGAACATACCCAACATGATGTTTTGAGGCTTAA
AAATGTTTGTTGGCTTGAGATGAAACACACTTTTAAACTGGTTAAGCGTG
GCGAATATCAGTTTGTTATGAGAATGAAGTTTGGAGAAGATTTTTACTGG
CCTTCAGGAGGTGCTGGGGAAATGGTTCGTATTAAGTCTTGTTGGAGGAG
CAATAAAAATGATGCAAATTTTGAAAATGCATTTAATTTTCATACCAAGG
ATTGGGAAAAAATTCGAGCATATATCAATGAAGGGACACCTTTAGAAGAT
TTTCCTGATGGCTGTTCATTTAAGAATCACGATAAAGAGTCTGGTTGGTT
TGATTTTGTAGTGAATGAATTGATTTCCCTGGATAATAATGAAAATGAAG
TACTTGTTTGGTTTGCTGATAGAGAGAATCCATGGTGGAAATCTGGTTTA
GTATGGGATTATATTGAATTGCGTCCTCTTGTAGATTGAACATTTTGTTT
TGATGAATCTAATTTGTATCTTGAANATGAAATTTGGAGAAGATTTTTAC
TGGCCTTCAGGAGATGGTGGGGAAATGGTTCATATCAAGTCTTGTTGGAG
GAGCAATAAAAATGATGCCAATTTTGAAAATGCATTTAATTTTCATACCA
ACGATTGGGAAAAAATTCGAGCATATATTAATGAAGGGACACCTTTAGAA
AATTTTTCTGCTGGCTGTTCATTTAAGAATCATGATAAAGAGTCTGGTTG
GTTTGATTTTGTAGTGAATGAATTGATTTCCCTGGATGATAATGAAAATG
AAGTACTTGTTTGGTTTGCTGATAGAGAGAATCCATGGTGGAAATCTGGT
TTAATATGGGATTATATTGAATTGCTCCCTCTTGTAGATTGAACATTTTG
TTTTGATAAATCTAATTGATATTGAATTTTAATATATTTCTAATTAACTT
CAATTTCATTATTTCAATATTAGATTTCAATATAATTCATTCTGAAAATT
TATAAAATATTTTTTGTCGATTTTAAATTTATAAAGCCATTGGTCAGATG
CACTTTCGTCAAAAGCTTTTTTCAATTCAATTTTGTCTATTCACGCAAAC
AGCTGAGGGCGAGGGCCAGCGAGGGCTTTCATTGTTTGAGAAGAAATAAA
ATTCTGGAAACCGGCCGAATGAAAAAAATCTTTTTTCTGACCTGACCGCA
GACTATGGGCTCATCTATATGGTTCATCATATAGATGAGCCCATAGTCTG
CGGTCGGGTCAGAAAAAAGATTTTGGTTCATCATAAAGAAAATCAAGTTG
ACCGTTCAAGCTATCAAAACTTTTTTCCTTCACCCGCATTCCGGAAACAC
TACATTTTTTTTATTTTCGCCTTATTTCACAATTTTGCACGTAATTTAGA
TTTCACTTTTTTGTACTGTTATAATAGTAATATATTACAATATTTTTATA
TCAACATTTTACAACATTTTCTAGCTGTCATACCATTGAGGAAAAAGTAT
ACATTTTTTATAAGAACATTCAAAATTTTTAAGGATGTTTGAATGCTCTT
AACTTTTTGAATTTTAAGCCTAAATGCTCTTAAGTTGTTCTTATTTTCAC
AAATTTTCACAATACTTTTGTACAATTTCCTAAGAAATCAGGTGTCTTAG
AGTCAGTGAACCCGTAAATTGTTCATAACTTATTCTGAACTTCAAAGCCG
TATGTCCTTTATATGATTTGTTCTTTTAAAGAGTGTATGCGTATGCTAAT
GAAAATAAGAGGCAAACTAGAAATTCGGTCCTTCGTACTTCACTTCATAG
CAAGTACTAAAAACTGTGTATAAATTTCGTTACTTCCGTGTATAGAGGTT
TTAGCTACAGAGTAAAGTATAGAGTTACGTTATTTCTGCCATTTTGAAGA
AAAAAAAAGTTCGAATGTTTGTTGGTTGTAGGTGTAGCTACTTCGAATTT
GCTTCCATAATACACATTTTTTTATAAGAACATCTAAAATTTTTGAAGCC
TTCAGATGTTCTTAACTTGTTCTTAAGATTTTTGCCATCGAAGCCTTATG
TTCTTATATAGTTTGTTCTTATAAAAAAACGTGTCGTGAAAACTTAACAA
AACATGTCAAACGTGTCAATTAATTTCTTTCTTTTTTCTTAGAATTTTAA
AGTATATATAAATGGTATAAAACAATAGAAAAAAGGGAAACCAAATCTTA
AATCAAGGTTTGAAGTTCAGATGGAAGGATCTACAATTGGAGCACTAAAT
GTTGACGATTTGTTCTACTTGTTTGGTTTCTTAAAGCCCAATGACCTCCT
GTCTTTTGCTCTCACCTGCCAAGAAATGAGAGACAGCATTTACAAATTTT
GTGAAACAAGAGTGTTGAATGGTGGCCAGTTTTTTGAATCGACTACATGC
TTGTCACCAAAGGAAGTGTCCATAAAAGACAAATTGACAAAGTTTCAATC
ACCTCTACTTGGTTACAAAGTTGCAAAGCTATACAATGATCGAGTACGTG
TATCTTGTTTGGGAGTCGATTCTTTCCCTCACTCAACAAATCCTGAATAC
TTTTCAAGAGAGTTCGATGAACATACCCAACATGATGTTTTGAGGCTTAA
AAGTGTCTGTTGGCTTGAGATGAAACACACTTTTAAATTGGTTAAGCGTG
GCGAATATCAGTTTGTCATGAGGATGAAATTTGGAGAAGATTTTTACTGG
CCTTCAGGAGATGGTGGGGAAATGGTTTATATTAAGTCTTGTTGGAGGAG
CAATAANTTTACTGGCCTTCAGGAGATGGTGGGGAAATGGTTCATATCAA
GTCTTGTTGGAGGAGCAATAAAAATGATGCCAATTTTGAAAATGCATTTA
ATTTTCATACCAACGATTGGGAAAAAATTCGAGCATATATTAATGAAGGG
ACACCTTTAGAAGATTTTCCTGCTGGCTGTTCATTTAAGAATCATGATAA
AGAGTCTGGTTGGTTTGATTTTGTAGTGGATGAACCTATCATTTTGGAAG
ATGATAATCAAGATGTTTTAGTACGGTTCTCTGATACGGAGAATAATTAC
TGGAAAGAAGGGATGGTGTGGGATTATATTGAGTTGGTTCCTTTTTATTG
CTGAGCATAATAACACATTACACACATATTACATATTACACACATATTAC
ACATTACACACATATTACACATTACACACATATTACACATTACACACATA
TTACACATTACACACATATTACACATTACACACATATTACACATTACACA
CATATTACACATTACACACATATTACACATTACACACATGTTACACATTA
CACACATATTACACATTACACACATATTACACATTACACACATGTTACAC
ATTGTTTTCTTTTTGTAAGAAAAACAGACAGAATATCTCGCACAATTGTT
CCATGCTGGCGCAATATCCAGGCAATGCACTATTTTATAGATTATTATAG
AATCCAAAATCAGTCAGAAAATCATTACCTAGGGATCGTGTTTTTTCAAA
GCTGAGGTAGTTTTGTTTTTGTTTTTGTTTTTAGTTTTAAGAATTTTAAG
CATGTAAAATTTTTCTTTATAATTTTGTGTGGAATTAGGTTTATCTTCTT
GTCTTCTTAAGCAAAGTTCGTTCAGTCAGAAGTAGACTTCTAGTCTAGTG
ACAAGTGGACTAGTGGAGATCGTCCAGCAGCACATTTACAGTAGGTGCTT
TTAAACAAAATTTTACAAAGTTGTTTGATTTCTATTCCCTTCGAGTATTT
ATGTTGAGTACACTTTTTTTATTTTGGAAGCCTTCGAATATTCTTAACTT
TTTTATTTTCAAGTCTAAAAATGTTCTTAGCATGTGCTTATTTTCAC

Coding sequence (CDS) from alignment at scaffold_336:200502..204548-

>TCONS_00060184 ID=TCONS_00060184|Name=TCONS_00060184|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_336:200502..204548- (Clytia hemisphaerica)
ATGGTGGGGAAATGGTTCATATCAAGTCTTGTTGGAGGAGCAATAAAAAT
GATGCCAATTTTGAAAATGCATTTAATTTTCATACCAACGATTGGGAAAA
AATTCGAGCATATATTAATGAAGGGACACCTTTAGAAGATTTTCCTGCTG
GCTGTTCATTTAAGAATCATGATAAAGAGTCTGGTTGGTTTGATTTTGTA
GTGGATGAACCTATCATTTTGGAAGATGATAATCAAGATGTTTTAGTACG
GTTCTCTGATACGGAGAATAATTACTGGAAAGAAGGGATGGTGTGGGATT
ATATTGAGTTGGTTCCTTTTTATTGCTGAATGGAAACATCTACAATTGGA
GCACTACGTGTATCTTGTTTAGAAGTCGATTCTTTCTCTCACTCAACAAA
TCCTGAATACTTTTCAAGAGAGTTTGATGAACATACCCAACATGATGTTT
TGAGGCTTAAAAATGTTTGTTGGCTTGAGATGAAACACACTTTTAAACTG
GTTAAGCGTGGCGAATATCAGTTTGTTATGAGAATGAAGTTTGGAGAAGA
TTTTTACTGGCCTTCAGGAGATGGTGGGGAAATGGTTCATATCAAGTCTT
GTTGGAGGAGCAATAAAAATGATGCCAATTTTGAAAATGCATTTAATTTT
CATACCAACGATTGGGAAAAAATTCGAGCATATATTAATGAAGGGACACC
TTTAGAAGATTTTCCTGCTGGCTGTTCATTTAAGAATCATGATAAAGAGT
CTGGTTGGTTTGATTTTGTAGTGGATGAACCTATCATTTTGGAAGATGAT
AATCAAGATGTTTTAGTACGGTTCTCTGATACGGAGAATAATTACTGGAA
AGAAGGGATGGTGTGGGATTATATTGAGTTGGTTCCTTTTTATTGCTGAA
TGGAAACATCTACAATTGGAGCACTACGTGTATCTTGTTTAGAAGTCGAT
TCTTTCTCTCACTCAACAAATCCTGAATACTTTTCAAGAGAGTTTGATGA
ACATACCCAACATGATGTTTTGAGGCTTAAAAATGTTTGTTGGCTTGAGA
TGAAACACACTTTTAAACTGGTTAAGCGTGGCGAATATCAGTTTGTTATG
AGAATGAAGTTTGGAGAAGATTTTTACTGGCCTTCAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037859XLOC_037859Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060184-proteinTCONS_00060184-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060184-exon-scaffold_336-1575043694:204189..204548TCONS_00060184-exon-scaffold_336-1575043694:204189..204548Clytia hemisphaericaexon
TCONS_00060184-exon-scaffold_336-1575043694:200502..201573TCONS_00060184-exon-scaffold_336-1575043694:200502..201573Clytia hemisphaericaexon
TCONS_00060184-exon-scaffold_336-1510915933:204189..204548TCONS_00060184-exon-scaffold_336-1510915933:204189..204548Clytia hemisphaericaexon
TCONS_00060184-exon-scaffold_336-1510915933:200502..201573TCONS_00060184-exon-scaffold_336-1510915933:200502..201573Clytia hemisphaericaexon
TCONS_00060184-exon-scaffold_336-1491911889:204189..204548TCONS_00060184-exon-scaffold_336-1491911889:204189..204548Clytia hemisphaericaexon
TCONS_00060184-exon-scaffold_336-1491911889:200502..201573TCONS_00060184-exon-scaffold_336-1491911889:200502..201573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:200502..204548 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.520151	0.245909	0.135628	0.469966	0.107655	0	0.456077	0.231977	0	0	0	8.37555e-10	0	0.0554144	0.0222679	0	0.0265148	0.0973339	0.00154029	0.534073	0.229304	0	0.316343	0.00079512	0	0	0.0926381	0.554726	0	0.214015
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025886PP2-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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