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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060184 ID=TCONS_00060184|Name=TCONS_00060184|organism=Clytia hemisphaerica|type=transcript|length=1432bp
GTAGACACTAAATTTTGCATCCATTTCtcagaagaaaatgaaaaataaaa
taaaacattgaaTCAACCAGAATAGAAGATTTGATTAAACCAAATAACGA
GTCAAAGCACCACGAAACAATGGAAACATCTACAATTGGAGCACTACGTG
TATCTTGTTTAGAAGTCGATTCTTTCTCTCACTCAACAAATCCTGAATAC
TTTTCAAGAGAGTTTGATGAACATACCCAACATGATGTTTTGAGGCTTAA
AAATGTTTGTTGGCTTGAGATGAAACACACTTTTAAACTGGTTAAGCGTG
GCGAATATCAGTTTGTTATGAGAATGAAGTTTGGAGAAGATTTTTACTGG
CCTTCAGGAGATGGTGGGGAAATGGTTCATATCAAGTCTTGTTGGAGGAG
CAATAAAAATGATGCCAATTTTGAAAATGCATTTAATTTTCATACCAACG
ATTGGGAAAAAATTCGAGCATATATTAATGAAGGGACACCTTTAGAAGAT
TTTCCTGCTGGCTGTTCATTTAAGAATCATGATAAAGAGTCTGGTTGGTT
TGATTTTGTAGTGGATGAACCTATCATTTTGGAAGATGATAATCAAGATG
TTTTAGTACGGTTCTCTGATACGGAGAATAATTACTGGAAAGAAGGGATG
GTGTGGGATTATATTGAGTTGGTTCCTTTTTATTGCTGAGCATAATAACA
CATTACACACATATTACATATTACACACATATTACACATTACACACATAT
TACACATTACACACATATTACACATTACACACATATTACACATTACACAC
ATATTACACATTACACACATATTACACATTACACACATATTACACATTAC
ACACATATTACACATTACACACATGTTACACATTACACACATATTACACA
TTACACACATATTACACATTACACACATGTTACacattgttttctttttg
taagaaaaacAGACAGAATATCTCGCACAATTGTTCCATGCTGGCGCAAT
ATCCAGGCAATGCACTATTTTATAGATTATTATAGAATccaaaatcagtc
agaaaatcaTTACCTAGGGATCGTGTTTTTTCAAAGCTGAggtagttttg
tttttgtttttgtttttagttttaagaattttaagcatgtaaaatttttc
tttataattttgtGTGGAATTAGGTTTATCTTCTTGTCTTCTTAAGCAAA
GTtcgttcagtcagaagtagacttcTAGTCTAGTGACAAGTGGACTAGTG
GAGATCGTCCAGCAGCACATTTACAGTAGGtgcttttaaacaaaatttta
caaagTTGTTTGATTTCTATTCCCTTCGAGTATTTATGTtgagtacactt
tttttattttggaagccttcgaatattcttaacttttttattttcaagtc
taaaaatgttcttagcatgtgcTTATTTTCAC Run BLAST on NCBI protein sequence of TCONS_00060184-protein >TCONS_00060184-protein ID=TCONS_00060184-protein|Name=TCONS_00060184-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
METSTIGALRVSCLEVDSFSHSTNPEYFSREFDEHTQHDVLRLKNVCWLE
MKHTFKLVKRGEYQFVMRMKFGEDFYWPSGDGGEMVHIKSCWRSNKNDAN
FENAFNFHTNDWEKIRAYINEGTPLEDFPAGCSFKNHDKESGWFDFVVDE
PIILEDDNQDVLVRFSDTENNYWKEGMVWDYIELVPFYC Run BLAST on NCBI transcript from alignment at scaffold_336:200502..204548- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060184 ID=TCONS_00060184|Name=TCONS_00060184|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at scaffold_336:200502..204548- (Clytia hemisphaerica)
GTAGACACTAAATTTTGCATCCATTTCTCAGAAGAAAATGAAAAATAAAA
TAAAACATTGAATCAACCAGAATAGAAGATTTGATTAAACCAAATAACGA
GTCAAAGCACCACGAAACAATGGAAACATCTACAATTGGAGCACTACGTG
TATCTTGTTTAGAAGTCGATTCTTTCTCTCACTCAACAAATCCTGAATAC
TTTTCAAGAGAGTTTGATGAACATACCCAACATGATGTTTTGAGGCTTAA
AAATGTTTGTTGGCTTGAGATGAAACACACTTTTAAACTGGTTAAGCGTG
GCGAATATCAGTTTGTTATGAGAATGAAGTTTGGAGAAGATTTTTACTGG
CCTTCAGGAGGTGCTGGGGAAATGGTTCGTATTAAGTCTTGTTGGAGGAG
CAATAAAAATGATGCAAATTTTGAAAATGCATTTAATTTTCATACCAAGG
ATTGGGAAAAAATTCGAGCATATATCAATGAAGGGACACCTTTAGAAGAT
TTTCCTGATGGCTGTTCATTTAAGAATCACGATAAAGAGTCTGGTTGGTT
TGATTTTGTAGTGAATGAATTGATTTCCCTGGATAATAATGAAAATGAAG
TACTTGTTTGGTTTGCTGATAGAGAGAATCCATGGTGGAAATCTGGTTTA
GTATGGGATTATATTGAATTGCGTCCTCTTGTAGATTGAACATTTTGTTT
TGATGAATCTAATTTGTATCTTGAANATGAAATTTGGAGAAGATTTTTAC
TGGCCTTCAGGAGATGGTGGGGAAATGGTTCATATCAAGTCTTGTTGGAG
GAGCAATAAAAATGATGCCAATTTTGAAAATGCATTTAATTTTCATACCA
ACGATTGGGAAAAAATTCGAGCATATATTAATGAAGGGACACCTTTAGAA
AATTTTTCTGCTGGCTGTTCATTTAAGAATCATGATAAAGAGTCTGGTTG
GTTTGATTTTGTAGTGAATGAATTGATTTCCCTGGATGATAATGAAAATG
AAGTACTTGTTTGGTTTGCTGATAGAGAGAATCCATGGTGGAAATCTGGT
TTAATATGGGATTATATTGAATTGCTCCCTCTTGTAGATTGAACATTTTG
TTTTGATAAATCTAATTGATATTGAATTTTAATATATTTCTAATTAACTT
CAATTTCATTATTTCAATATTAGATTTCAATATAATTCATTCTGAAAATT
TATAAAATATTTTTTGTCGATTTTAAATTTATAAAGCCATTGGTCAGATG
CACTTTCGTCAAAAGCTTTTTTCAATTCAATTTTGTCTATTCACGCAAAC
AGCTGAGGGCGAGGGCCAGCGAGGGCTTTCATTGTTTGAGAAGAAATAAA
ATTCTGGAAACCGGCCGAATGAAAAAAATCTTTTTTCTGACCTGACCGCA
GACTATGGGCTCATCTATATGGTTCATCATATAGATGAGCCCATAGTCTG
CGGTCGGGTCAGAAAAAAGATTTTGGTTCATCATAAAGAAAATCAAGTTG
ACCGTTCAAGCTATCAAAACTTTTTTCCTTCACCCGCATTCCGGAAACAC
TACATTTTTTTTATTTTCGCCTTATTTCACAATTTTGCACGTAATTTAGA
TTTCACTTTTTTGTACTGTTATAATAGTAATATATTACAATATTTTTATA
TCAACATTTTACAACATTTTCTAGCTGTCATACCATTGAGGAAAAAGTAT
ACATTTTTTATAAGAACATTCAAAATTTTTAAGGATGTTTGAATGCTCTT
AACTTTTTGAATTTTAAGCCTAAATGCTCTTAAGTTGTTCTTATTTTCAC
AAATTTTCACAATACTTTTGTACAATTTCCTAAGAAATCAGGTGTCTTAG
AGTCAGTGAACCCGTAAATTGTTCATAACTTATTCTGAACTTCAAAGCCG
TATGTCCTTTATATGATTTGTTCTTTTAAAGAGTGTATGCGTATGCTAAT
GAAAATAAGAGGCAAACTAGAAATTCGGTCCTTCGTACTTCACTTCATAG
CAAGTACTAAAAACTGTGTATAAATTTCGTTACTTCCGTGTATAGAGGTT
TTAGCTACAGAGTAAAGTATAGAGTTACGTTATTTCTGCCATTTTGAAGA
AAAAAAAAGTTCGAATGTTTGTTGGTTGTAGGTGTAGCTACTTCGAATTT
GCTTCCATAATACACATTTTTTTATAAGAACATCTAAAATTTTTGAAGCC
TTCAGATGTTCTTAACTTGTTCTTAAGATTTTTGCCATCGAAGCCTTATG
TTCTTATATAGTTTGTTCTTATAAAAAAACGTGTCGTGAAAACTTAACAA
AACATGTCAAACGTGTCAATTAATTTCTTTCTTTTTTCTTAGAATTTTAA
AGTATATATAAATGGTATAAAACAATAGAAAAAAGGGAAACCAAATCTTA
AATCAAGGTTTGAAGTTCAGATGGAAGGATCTACAATTGGAGCACTAAAT
GTTGACGATTTGTTCTACTTGTTTGGTTTCTTAAAGCCCAATGACCTCCT
GTCTTTTGCTCTCACCTGCCAAGAAATGAGAGACAGCATTTACAAATTTT
GTGAAACAAGAGTGTTGAATGGTGGCCAGTTTTTTGAATCGACTACATGC
TTGTCACCAAAGGAAGTGTCCATAAAAGACAAATTGACAAAGTTTCAATC
ACCTCTACTTGGTTACAAAGTTGCAAAGCTATACAATGATCGAGTACGTG
TATCTTGTTTGGGAGTCGATTCTTTCCCTCACTCAACAAATCCTGAATAC
TTTTCAAGAGAGTTCGATGAACATACCCAACATGATGTTTTGAGGCTTAA
AAGTGTCTGTTGGCTTGAGATGAAACACACTTTTAAATTGGTTAAGCGTG
GCGAATATCAGTTTGTCATGAGGATGAAATTTGGAGAAGATTTTTACTGG
CCTTCAGGAGATGGTGGGGAAATGGTTTATATTAAGTCTTGTTGGAGGAG
CAATAANTTTACTGGCCTTCAGGAGATGGTGGGGAAATGGTTCATATCAA
GTCTTGTTGGAGGAGCAATAAAAATGATGCCAATTTTGAAAATGCATTTA
ATTTTCATACCAACGATTGGGAAAAAATTCGAGCATATATTAATGAAGGG
ACACCTTTAGAAGATTTTCCTGCTGGCTGTTCATTTAAGAATCATGATAA
AGAGTCTGGTTGGTTTGATTTTGTAGTGGATGAACCTATCATTTTGGAAG
ATGATAATCAAGATGTTTTAGTACGGTTCTCTGATACGGAGAATAATTAC
TGGAAAGAAGGGATGGTGTGGGATTATATTGAGTTGGTTCCTTTTTATTG
CTGAGCATAATAACACATTACACACATATTACATATTACACACATATTAC
ACATTACACACATATTACACATTACACACATATTACACATTACACACATA
TTACACATTACACACATATTACACATTACACACATATTACACATTACACA
CATATTACACATTACACACATATTACACATTACACACATGTTACACATTA
CACACATATTACACATTACACACATATTACACATTACACACATGTTACAC
ATTGTTTTCTTTTTGTAAGAAAAACAGACAGAATATCTCGCACAATTGTT
CCATGCTGGCGCAATATCCAGGCAATGCACTATTTTATAGATTATTATAG
AATCCAAAATCAGTCAGAAAATCATTACCTAGGGATCGTGTTTTTTCAAA
GCTGAGGTAGTTTTGTTTTTGTTTTTGTTTTTAGTTTTAAGAATTTTAAG
CATGTAAAATTTTTCTTTATAATTTTGTGTGGAATTAGGTTTATCTTCTT
GTCTTCTTAAGCAAAGTTCGTTCAGTCAGAAGTAGACTTCTAGTCTAGTG
ACAAGTGGACTAGTGGAGATCGTCCAGCAGCACATTTACAGTAGGTGCTT
TTAAACAAAATTTTACAAAGTTGTTTGATTTCTATTCCCTTCGAGTATTT
ATGTTGAGTACACTTTTTTTATTTTGGAAGCCTTCGAATATTCTTAACTT
TTTTATTTTCAAGTCTAAAAATGTTCTTAGCATGTGCTTATTTTCAC Coding sequence (CDS) from alignment at scaffold_336:200502..204548- >TCONS_00060184 ID=TCONS_00060184|Name=TCONS_00060184|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_336:200502..204548- (Clytia hemisphaerica)
ATGGTGGGGAAATGGTTCATATCAAGTCTTGTTGGAGGAGCAATAAAAAT
GATGCCAATTTTGAAAATGCATTTAATTTTCATACCAACGATTGGGAAAA
AATTCGAGCATATATTAATGAAGGGACACCTTTAGAAGATTTTCCTGCTG
GCTGTTCATTTAAGAATCATGATAAAGAGTCTGGTTGGTTTGATTTTGTA
GTGGATGAACCTATCATTTTGGAAGATGATAATCAAGATGTTTTAGTACG
GTTCTCTGATACGGAGAATAATTACTGGAAAGAAGGGATGGTGTGGGATT
ATATTGAGTTGGTTCCTTTTTATTGCTGAATGGAAACATCTACAATTGGA
GCACTACGTGTATCTTGTTTAGAAGTCGATTCTTTCTCTCACTCAACAAA
TCCTGAATACTTTTCAAGAGAGTTTGATGAACATACCCAACATGATGTTT
TGAGGCTTAAAAATGTTTGTTGGCTTGAGATGAAACACACTTTTAAACTG
GTTAAGCGTGGCGAATATCAGTTTGTTATGAGAATGAAGTTTGGAGAAGA
TTTTTACTGGCCTTCAGGAGATGGTGGGGAAATGGTTCATATCAAGTCTT
GTTGGAGGAGCAATAAAAATGATGCCAATTTTGAAAATGCATTTAATTTT
CATACCAACGATTGGGAAAAAATTCGAGCATATATTAATGAAGGGACACC
TTTAGAAGATTTTCCTGCTGGCTGTTCATTTAAGAATCATGATAAAGAGT
CTGGTTGGTTTGATTTTGTAGTGGATGAACCTATCATTTTGGAAGATGAT
AATCAAGATGTTTTAGTACGGTTCTCTGATACGGAGAATAATTACTGGAA
AGAAGGGATGGTGTGGGATTATATTGAGTTGGTTCCTTTTTATTGCTGAA
TGGAAACATCTACAATTGGAGCACTACGTGTATCTTGTTTAGAAGTCGAT
TCTTTCTCTCACTCAACAAATCCTGAATACTTTTCAAGAGAGTTTGATGA
ACATACCCAACATGATGTTTTGAGGCTTAAAAATGTTTGTTGGCTTGAGA
TGAAACACACTTTTAAACTGGTTAAGCGTGGCGAATATCAGTTTGTTATG
AGAATGAAGTTTGGAGAAGATTTTTACTGGCCTTCAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060184-exon-scaffold_336-1575043694:204189..204548 | TCONS_00060184-exon-scaffold_336-1575043694:204189..204548 | Clytia hemisphaerica | exon |
| TCONS_00060184-exon-scaffold_336-1575043694:200502..201573 | TCONS_00060184-exon-scaffold_336-1575043694:200502..201573 | Clytia hemisphaerica | exon |
| TCONS_00060184-exon-scaffold_336-1510915933:204189..204548 | TCONS_00060184-exon-scaffold_336-1510915933:204189..204548 | Clytia hemisphaerica | exon |
| TCONS_00060184-exon-scaffold_336-1510915933:200502..201573 | TCONS_00060184-exon-scaffold_336-1510915933:200502..201573 | Clytia hemisphaerica | exon |
| TCONS_00060184-exon-scaffold_336-1491911889:204189..204548 | TCONS_00060184-exon-scaffold_336-1491911889:204189..204548 | Clytia hemisphaerica | exon |
| TCONS_00060184-exon-scaffold_336-1491911889:200502..201573 | TCONS_00060184-exon-scaffold_336-1491911889:200502..201573 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_336 | supercontig | scaffold_336:200502..204548 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR025886 | PP2-like |
Blast
The following BLAST results are available for this feature:
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