TCONS_00060172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060172
Unique NameTCONS_00060172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060172 ID=TCONS_00060172|Name=TCONS_00060172|organism=Clytia hemisphaerica|type=transcript|length=1646bp
AAAAGTCATAATAACAGCTCCTCCGATACTAAGTCAACAAAGATACCGTG
GTCACACATACTAACATCAAGGCCAGTATGGGCGATTATGATTGGCTTGT
TTAGTCATTGTTGGGTGTGGTACATGTTGTTGACAGGACTACCATCTTAC
TTCAGTGAAGTACTTGATTTCAAACTTAAAAATAATGGGTTTCTCTCAGC
ATTACCATACCTTTCGTCGTTCGTGGTACAACAAATAGGTGGCTGGTTCG
CAGACTATCTACGGAAAAATTGGATATCAACAACTGCTGCACGCAGACTA
GCTGGTATTTTAGCATTTTATCCGTCCGCTGGCTTTCTATTGCTGGTCAG
TTATGCAGGCTGCGATCAAATCGCTTTATCAGTAGGCTACCTGGTTTTAG
CAGTGACTTTCATTACACTTAATCAAATTGGCTTGATTTGTAGTCAGGTC
GACATTGCACCAAGATATGTGGGAATAATAATGGGACTTGCCAACTCAGC
TGGTACAATCGCAGGATGTATCACACCTTCAGTTACTGGCTATTTTACCA
ACGAACATCCGACTCGTGAACAATATCGCAAAGTATTCATGATCGCGGCA
AGTATTTGTGTAATTGGTGGAACGTTCTGTAATGTTTTTGTGAGTGGAGA
ATTACAACCATGGAATGATATTTATCatgacgaagaaaattttaatgGTA
GTGACGAGGAACAGGTTTTAATAAACTCGTCAAATAGTATCAATGATGAT
GAACTTGTTGATAATTATGTTAGGACGTAAAACTCTTTTTAAATATAAGA
CATATCAAGGCCATTTCTTTTACTTTACAAACGAACATGTAAGTTTTCGT
TGTAAAGTTTCTTGAATTCGGTTGACTTATCAAGTCCATATTATAGTTAT
TTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGCCTCATGAATTCGGTT
GACTTATCAAGTCCATATTATAATTATTTTACAAACGAGCTTGTAAGTTT
TCTTTGTGAAGCCTCATGAATTCGGTTGACTCATCAAGTCCATATTATAG
TTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGTCTCATGAATTC
GGTTGAATTATCAAGGCAGTGACGAGGAACAAGTTTTAATAAACTCGTCA
AACAGTATCAATATGATGAACTTGTTGATAATTATGTTANAGGAACAAGT
TTTAATAAACCCGTCAAACAGTATCAATATGATGAACTTGTTGATAATTA
TGTTAGTACGTTAATTTATTTTCAGATATAAGCTCCTTATAACTTTGTCA
GAGATAACACGTCATCTTTCTTTAATGAATATTTCGGCCAACtggctttt
ttcaaaataaagcatTTAGCTCATTATAATGGAGGCTTCATAACTAGAAT
TTTTCCGAATAATTAGTACAACTTTTCTGGtaccttcagttaacaatgcc
tgttcaagttatggagacgCCGCTATCATTTGCTAGAATTTGATCAAATC
TTTGTGTAGGGTATCTTTTAGAAACagaattttctgaaaacttTGGGATT
TTAGTCCCATGTATTGTCCATTTTTCGATCCTCAGCGATACTTTGACATC
AATTATTGCCAAGGATAGTATAGCCCGACATGCGAATTGTGCTAAa
Run BLAST on NCBI

transcript from alignment at scaffold_336:160852..173761-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060172 ID=TCONS_00060172|Name=TCONS_00060172|organism=Clytia hemisphaerica|type=transcript|length=12910bp|location=Sequence derived from alignment at scaffold_336:160852..173761- (Clytia hemisphaerica)
AAAAGTCATAATAACAGCTCCTCCGATACTAAGGTATTGGATTGATTATG
TATTTCGAGACTAGACTTTGTTAACCTCAAACCTTGATCATACCATCATT
AGAGGATTGAGAATTGACGTGTCTCTGTATAATGCTCAGAAACTTAAAAA
GGGTCACAATTACATAGCCTATACTAGACGTCACCCGCGTTTTTTCTTCG
CAATTAACGTCTATTCCACTTTGCGACTTTTTCCAATGTTTTGAGCCCAG
GTTTTCGGGCTAGACAGGAGAAGGGAACCTTTTTTGAAGCGTCTTTTCGA
CCATGAAATTGCTTGATATGCAACACTGCAATGTCTTCCGACATTATTCT
CAAAAAAAAGTAAAATACGAAAAACAAAATTTTGTTCATTCTTGACGTTT
CTATACTTCTTGTATCATGATTACAAGCAAATGTTAGCTTAAAGGCCTGT
TTCCATTGATCGCGCGAGCGCGCACGCTAGGCCAAAATTTCCTAAACTAG
CACATTGACGTCACGAATTAAAGTTTCTTGTACATAAAATACGTACGCTC
TTGTACGCTTTTGTGCGCTTTTCTCCGCTGAAAATTTCCAACTTTTCTTA
GCGTACAAGAGCGCACATCTCAATCGATAATCTTTCAACCAATCAAGAAA
GGGAAAAACTGCTGAGTAAACAAAAAAATTTAAACAGATATATTGTGTTC
GAGTCCACCTCTTAGTTGATGGATGGAAATCAAACATTGATCGCGCGGAG
TGTGCGGTCAAATATATTATAAGAATTTTGACCTAGCGTGCATGCTCGCG
CGATCGATGGAAACAGGCCTTTACAAGGAAAAACGTGTTGATAAATCAAA
ATTTCAAAATCACATCTAACAATTATGGGTCATAAAATTTACATAATAGA
ACGCATACATATAAATATTCAATAAAGCTCTAGAGGATAAGAAGATACCG
TTTTATTTAAATCAGGTTTCAAATCCCTAATGATTAAAGATTCCTTTATA
TAAAGCTCTTCATCAGTTTTTCCTCCTTCATAAACCTTCATGTTCTCTAG
GGACACGCCGTGCCCAGTTCTAAAAAGATGTCTCGTTACAGATGTTGGTC
TCTCAATATTTCGATGTTCCTTGTACCGTGTCACAATATGTCGTTTTGTT
TTCCCAATATAGTAAGACTCGCAGTCTGTACAGTGCACTCCGTACACAAC
AAATGAACGTAACCTTAGAGGTATTTTATCTTTGAAGGTAAACAGATTTG
AGAGTCGAAACGTAGTGCGGAAAACGATCTTTAGATCAACTTGAAGTATC
GAAACGTCAAGAATTCGTCTTTACTTTTTTTTTGAGAATAATCTGGCCCG
AAGAAAATTTTTTCTGACATTCTATCACGGACCCAACAGCTGATTGGTTG
TAAGTGACGTAAAATCGGTTAATACGTCACTTGCGACCAATCCTGACCAA
TCAGGTATTTGGTCCGTAGAACCCATTGCAATGGTTATCATAAATTCATT
CATTTAGTCAACAAAGATACCGTGGTCACACATACTAACATCAAGACCAG
TATGGGCGGTTATGATTGGCTTGTTTAGTCATTGTTGGGTGTGGTACATG
TTGTTGACAGGACTACCATCTTACTTCAGCGAAGTACTTGATTTCAAACT
TAAAAATGTAAGTGACAATCTCAGCTAATACGGATTTTACAATCCTATCC
AAGTACAGTCAACTCTCTCNCAGCTTCTGGGTCTATGGAAGACATTGCAA
TGGTTATCATAAATTCATTCATTTAGTCAACAAAGATACCGTGGTCACAC
ATACTAACATCAAGGCCAGTATGGGCGATTATGATTGGCTTGTTTAGTCA
TTGTTGGGTGTGGTACATGTTGTTGACAGGACTACCATCTTACTTCAGTG
AAGTACTTGATTTCAAACTTAAAAATGTAAGTGATAATCTCAGCTAATAC
GGATTTTACAATCCTATCCAAGTAAGTCAACTCTCTATAATTCGAACTTC
TGTTACTCGAATATTTCTGTAATTCTATCTAAATTCAATTTTTGGTTCTT
TACTTTTAAAGGGACATAAAAGTAATGACGAAATTTGTAAACAAACCGTA
TGCAGCGGGATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAAT
AAAAACAAATATAAATATTAAAATATGGCTCATTTTGATTGTTTCAATTA
TTGTTTTACAAGTTTGTTTTGGATACGTGATTATAATTGTTCTCTTTAAT
GACACGTGGTTCGCGCAATGTTTACATTTTACTACTTTTATGTCCCTTTC
ACATGTCTTAAAAATCACCATTTATTTTCATGGTTTTGTTTAGAATCCGA
GGCCAGGTGAATTTTTCTTAGTGTTCTTATGTTTAAGGAGAATTTCAGAC
TAGAAAAATTTTATTATACAGCGGAGTTTCCTTAACTCGAACACGTACGG
GGAATCAAAATTTGTTCGAGTTATGGAGACGATTATAAAGGATTGTTATC
TGAAGGGACAAGAAAACTTGCTCGAATCAATGCATTCAAATAACAGAGGT
TCAAGTTCTCAAATGTAATAAGTTTTTTATTATGCCTAACTTTACTTTTC
TTATAGAATGGGTTTCTCTCAGCATTACCATACCTTTCGTCGTTCGTGGT
ACAACAAATAGGTGGCTGGTTCGCAGACTATCTACGGAAAAATTGGATAT
CAACAACTGCTGCACGCAGACTAGCTGGTATTTTAGGTAAGGTGTGGACC
AAAGCAAACATGGCTCATTTCCAGAATTTTCTTTGTTGAATGGTTTTCGT
GCTATTTTTTTAACTGACACACAACGTTATTTCAACGTTTATCTGCTATC
GAATATTTTGATTGGTTAGTTGTCATTCGAACTTCTATTAAGTGACAAAA
GTAAAAAGGAAGATTGACCCTCCAAACCATGGTATTACTAGTACATATCA
CTGAACCTTATTAACACTTTTTAAAACAACCCTGTCTCTTAGACCCGCTG
GAACTTCTTCCCACAGTGGGGATGAAATGAAAATTTCTATCGAAATCCCT
ATGGAGATAGGAATTCTATTGTTCCAAGGGCAAAAATCTAGTGGGATGGT
TTACATTGAATTTCAAATAGAGATAAAAACAAATTTGATTTTCCAGGGAT
GTTATTGTGAGGTTATTTTCGTACCGGGGATGAAATTATGGTCAAATTTT
CCAGTGGGTAGGGGGTGGTCCCACCGGGTCTGTGACACAGGAGTGATTTA
AAAGTCCTAGACTACTAGACTATCCAAGTTTAATGCCCACTACAACTCTA
TCTAATCTAGATACCCCTGGGTGTTCTTGTATAGTCCATAATTCATGTTA
TGCACCACTGGAGAGTCTTCTGAGAACTTTTAAAAAATTCCACCCAATAC
TTTACTTAAACAATAGAAAAAGTGACGTATTGGATGGAACTCTCCAGTAG
TGCATATCATGAATTTCCTTTCTCTTTACAGCATTTTATCCGTCCGCTGG
CTTTCTATTGCTGGTCAGTTATGCAGGCTGCGATCAAATCGCTTTATCAG
TAGGCTACCTGGTTTTAGCAGTGACTTTCATTACACTTAATCAAATTGGC
TTGATTTGTAGTCAGGTAAGTTTTTCTCTATCAAATAGACTTTTGTCGGA
AAAAAATACCGAAATTGTTTGAGGAGTTCCTTCTCCCATGGATTTTTTAT
AGTTACCCCTTTGATTTTTGCCCAAGTCTTAAAGATTCTTTCCTTGGATT
TTGGCCAAGAGACCCACATGGTAGGTAAAAACTCCCTAACAATAAAGCCG
AAAGAAAGTCAATTTAAAAACTGGGGTAAGTAAGTGGAGAGTAAGAAATA
TAGGAAAGCAATTCGTGATATGCACCACTGCAATGACTTCACAAAATCAT
GCAACTTTTCTGTTTTTGCTCCACCCAATACGGGGTTGGTCTAAAAAGCA
GGGTAGCCAATTGGGGTAGCCAATTGGGCTAGGTTGTGGGGTACCTAAAT
ATTTTACAGACCAGAATAGAAATACCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAAA
TTTTCAAACGAAGCCAAGAAGGAAGACAAAATGGCACCAGGTCTCTTGAG
AAGTAACAAAGTTCAGTACCTTTGGAAAAAAGGCTATTGTGGCTANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAGGTTTC
AGATTTCAAAAGTTTAGGCAAAAAGAGGTACCCCATAACCTAGCCCAATT
GGCTACCCCATTGGCTACCCTGCTTTTTAGACCAACCCCCCAATACGTCA
CTATTGTTCAAGTGAAGTATTAGGTGGAAAATTTTAAAAGCTCTCAGAAG
ACTCTCCAGTTGTGTATATCATGAATAAAGGTTATCGCACTCAATTTTTC
GTAGGTCGACATTGCACCAAGATATGTGGGAATAATAATGGGACTTGCCA
ACTCAGCTGGTACAATCGCAGGATGTATCACACCTTCAGTTACTGGCTAT
TTTACCAACGAACATGTAAGTTTTCTTTTTAAAACCTCTTAAATTTGTTT
GACTTATCAAGACCATTTCATTTATTACACACCCTTACAATGTATCCAGC
TAAAAGAAGACCCTTGTAGTGCACTCTATCAACACCCTTACAGTGTATTT
CGAGGGTCTTGAAAAACCTACTCCTAAGGGCGGCACGTGCGTAGGTCGGA
CCATGAGTGCCCCTCCGGGTGAAAAACCAACTAGAGGAAAAACTAGAGAG
TGGATTATGAGAAGGGAGCAAAAGGGATATTTCCACAATACTTACAATAT
TGTCCTGGAGCTAAAATTCGAGTATATACTTGGCTTCAGGGAAATGTTTC
AAATGGATTTGGGGATTTCGAGTTTGTATTATAAATGAAGTATCCCATTC
TCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCGAACGTTTCA
TTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCGAACGTT
TCATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCGAAC
GTTTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAATTCG
AACGTTTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTGTCAAAT
TCGAACGTTTCATTCTCAATTTCGAACATTTTTAAAACATTCCATTTTCA
ATTTCAAACGTTTCATTGTTCGAAATTTGCAACTCTTTGACATGTTGGAA
GAAAAGCACCACCAAACTAATCCAACACGAAAAATTACACAATTCAATTA
GAGAGCTTTTTTGATCACGCCGAAAATGAAATATTTTATGGTGATCAAAC
TTTATCCAAAACCGTCCAACACGATTTTTGGACCTACCTGGAGGTCCTAT
AAATTAACCGTTGTCCGTTCGTTTGTCCGTCCGTCCGTCCGTTTGTCTGT
TACCAGATTTTCTCGAGATTGGCTCATTAGTTCTTTCTGATTTTTGGCAC
AAAGATGCAAAATGGCAATGCCCAAAATATGACGGAGCCTGATTTCCGGC
GGAGAATGCTGGAAATATGCCGGAAGTCGCTGTTTTTCTGGGTTTTCATT
GGAGTTTTTCCATATAATTGGTTGGTTTTTTTTCATTCAAGAACATTATT
AATAGCAATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAATTGATT
TTTGAAGCCGGAACTATTTAAAAATCGACGGATCAACCTATTTTCGCCGG
AAAGACAGTATTTCTTGAATTTTTCGAGCTTTACTTTATATTTTTTATGA
AATTTTGCACACTGTTGCAAAATGACAATACCTAAAATGTGACGGAGCCC
GATTTTCGAAAAACATTTTTTTCCGGCCGAAAATGCCGGAAATATGCCGG
AAAAACCAGTTTTTTGACATTTTTCGAATTTTCATCATTAGTTTTTTCTG
ATTCTTTGCAGTAAGATGCGTATTCGCAATGCTCAAAACATGACCGAGTT
CGATTTTTTGAGAAAAATTTTTTTCCGGTCGAAAATGCCGGAAATATGCC
ATGAATATGCCTTATATAAAATGTTCACCTCTGCTCTATCTTTTCAAGGT
CCTCGTTGCATTTTCTTACCCTTTGGCAATTCTTCGATTTTTATCTTATT
ATCACTGTTANTCATTGCATTTTCTTACCCTTTGGCAATTCTTCTATTTT
TATCTTATTATCATTGTTAGGTAGGTCCATTTAGCATGTGGCTTGTTTTC
TTCTTTTTTTGAATTTTCATTTTTTTCCAAAAATTTGAATTGATACAAAC
CGGTCCAACATTTCATCCAACATCAGAAAAAAGGCATGTTTGATTGAAAT
GTAGGATTGGTTTACCCTGGCCTTTATTCTGCAAAAACATTCCACAGCTC
CATTAAAACGCAGACAACTCATTCCAATTCTTATTCGACATTTTGAAGTC
AAAACATTGTAAATTCTCTGGTCATCAAAATGTTTTATTAAAAGTGAAGA
CATTGTAGTGTTTAATCGAACGATTAAGTTACGTCACGCGCTATCTTTTG
GTTTAATAGCGAGTTTATAGCGAGATTATGTATCTGGAATTCTCTACGGC
TACGGCTAAAGCAGCGAGGGAAATGGCGATTAAGGCAAGTAATGGCGGGT
GAAAGCAAGCTCGATATTTGACGTACGGCATTATGTCGACTTTGCTTATA
CGGTGTTTGGGTGTTTTTCCCGTACAGAGCAAAGTAGACAACGACATGTC
GCCTTTGGTGACGACCTGCATGGGCAGCCCCGCAACCGTAGCCGTAGAAT
ATCTCCGATACATAATCTCGCTTATGTATTTGGGGACGGTAAAGTGACTG
AAGCGACTTGAAATGACCCACAGTTCTGACCCCGAAAATCAATGACGGTA
AAAGTGCTGATTTACCGTCGTCCTCAGTTGGTCATGATCTAGTCAAATTA
GAACCTTACCGTCTCCGTCGCTGAAAAACACACATGCATAAACTCGGTAA
TGATTGGTTGAGTAACTGCAATCTTTATGCAAGCTCAGTGTTTTTGAAGC
AGCAATTCAGACCTCGAAAAATATAATGTCAATTTGGCTTTAAGAACAGC
CGAGTATCAATAAAAATTTACTGTCTATTATTGAAAGAAATGTACGCAAA
TGTTCCTGAAATGACATTTAAATAGAAGAGATGAATATGTTTTTTATAGG
TTTTTTCGCATTATATAATTTAAAATTTTCTATTTTTTGTCAAAAGAAAT
TTACGCAAATATCATTCCTGGTATGACATTTAAATAGAGAGATGAAAATG
TTTTTTATAGGCTTTTCGCAATATATAATTTAAAAATGCATATGACAACT
TCATCTTACGAAGCTAAGATAAATGAATAGGATTTTGACAGCGTTGACTT
ACATATGAACCATTTTCAATTGACTAGTTCTAAAAATATACACTGTCAAA
CCGAAAAATATCAACGAATTGAATTTTAAAAACAAATCAGATTTTAGCAA
GTTTTGTTAAGAGCAGAAGCTTCTTGATTTATTAAATCGTTTTCAACGCT
AAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAATATCGTTTTCGGACCGTAATGTACGAAGTA
AATAACAGGTACTCTATTATAAAAAGAAATTTTCTTTCTGTAAACAATCC
CCCTATATTGTTGGAAAATTGTAAATCGAGCTGACAATATATTGTGGACA
CCTTTTCAATATATTGCCGGCACTAAGCAATATATCATCAATATATTGCC
TGACAATATATTGTGTAGTGTATGTAGCCCTTAAAGATTTTTGCTCTAAG
AGAAAACATCATTTTATACACTAACAGTACAAGTATTGGAGGAAAAAGAG
TTTCACATAACCTTTAAAGATCTTCAAGCCCGCTGTGACAAAAGTACAAA
AACTGAGAATTATGATTTTCAAACTAGCATCATGCGTACTGTTGACTATC
TTTGTCACAGCTCAAGCGCAAAAGCAGTTTACGGCTATGTACAGGGTGAT
TGAGAACAAAACAGCAGTCAGTGACGACCATAACCCGTTCTTAAATGAGA
CTGTACATAGCATCATGCAATGTTTCATGAAGAGAATCGATCATTCTCAT
TTTGTTGAAGTCAAAACTGACGGAAAGATGCACCAATGTCGTTTCTATGA
AGCAATTAAACCTAGCTCCATTCGAAGGAGTCCTGAAGCGGGAATTGTTT
TGTATCAATACAGTGTAACAGCCAGTCTCTGTCAGGATCTTAACAGTGAG
GTGAACGGTGTCTTCCAACTAACTCTTGGTAGCGAAGAAGGTAGCCTGAC
CAAGGTGTACTGTGATCAGACCGAGAACGGAGGTGGCTGGACAACATTCC
AAAGACGCATAGATGGGTCTGTTGATTTCATCAGAAACTGGGAAGACTAT
AAGAATGGTTTTGGTGAGGCTGATGGGAATTATTGGCTTGGTTTGGAGAA
GTTACATCAAATCACACATCGATATGAAACAGTGTTGATCAGAGTTGAAG
CGACCACGAATGATGGATCTCATATTTTTGTTATTCATGAAGGATTCAAA
GTTAGCCCTGAATCAGACTTTTATAGATTCACAGCAGGCATTTTGACGGA
TGATGACAATTTATATGGGAGAGGCTGGAACGTTGTGAATAATTATCGTT
TTACGACCTATGATAAAGATAACGATAACTTATGGGTTGATAACTGTGCT
ATTTCAACTAAAGGTGGAGGCTGGTTTAAGAGTTGTGCCTGGATAGATTT
TAATAGTCCTTATTCTCAACTACGTTGGCACCATTTTTCGAATGATATCA
AATCCATTAGTTTGGCGGTCAAAGTGAAACACTGACCTCGTAAAAGACAT
TATTTCGTGTATTTCCTAACCATTTGCTAACACAGCATTTTTAAAGAAAA
GGAAGAACAGTTTTTTCTCCTTTCGGCGCTGTGCGAGCAAAATTTTAATT
GTATTTAAATTATTTAAGCATTGTTAATTTAAGGCTTTCTTTTTTGGACG
GGTATGTATTACACCATTTATTCAACCAGTATTTATTTCCGAATTGTATT
TGAATTATTTAAGTGTTAATTTATTAATTTATTTTATTTATTAATTGTTA
ATTTAAGATTGATTCGTTGAATTGTTAAAAAAAATTTGTAGTGGTAGAAG
CAATCTAACGTCATTTTACTTCAAAAGTGCCCTGCGTTTCTCATATTGTA
CTTGCTAATGTCCGATAACTATTAAGTATCATTAAAAGTTTTGTGGGGCC
ATTTCATTTTATATCCATACAGGAGGCTGGACGAACATTTCCAGGGGATA
GCCCGATAAGAATTCCAGGGGGTAAAAGACTGATTTAAATAAGTCCACTA
GACCAGCGTCCGAGATTCAGAAAAGGCCTTAAAAATAGTGTTCGTAGGGC
ACTCCTTAGATCAAGACAAATTTTTGATATTATGCTCCTAATAGGGTGTG
GAATTAACAAAAANTTGGCTTGGTTTGGAGAAGTTACATCAAATCACACA
TCGATATGAAACAGTGTTGATCAGAGTTGAAGCGACCACGAATGATGGAT
CTCATACTTTTGTTATTCATGAAGGATTCAAAGTTAGCCCTGAATCAGAC
TTTTATAGATTGACAGCAGGCATTTTGACGGAAGGTGACTATTCATATGG
GAGAGGCTGGAACGTTGTGAATAATTATCGTTTTACGACCTATGATAAAG
ATAACGATAACTATCTGGGTGGTAACTGTGCTATTTTAGCTAAAGGTGGA
GGCTGGTTTAAGAGTTGTGCCTGGATAGATTTTAATAGTCCTTATTCTCA
AATACGTTGGTTCCATTTTTCGAATGATATCAAATCCATTAGTTTGGCGG
TCAAAGTGAAAAACTGACCTTGTAAAAGACATTATTTTGTGTATTTCCTA
ACCATTTGCTAACACAGCATTTTTAAAGAAAAGGAAGAACAGTTTTTTCT
CCTTTCGGCGCTGTGCAAGCAAAATTTTAATTGTATTTAAATTATTTAAG
CATTGTTAATTTAAGGCTTTCTTTTTTGGACGGGTATTTATAACACCATT
TATTCAACCAGTATTTATTTCCGAATTTTATATAAATTATTTAAGTATTG
TTAATTTAAGGCTTTCTTTTTTGGACGGGTATTTATAACACCATTTATTC
AACCAGTATTCATTTCCGAATTGTATTTGAATTATTTAAGTGTTAATTTA
AGGCTTTCTTTTTTGGACGGGTATGTATTACACCATTTATTCAACTAGTA
TTTATTTCCAAATTGTATTTACATTATTTAAGTGTTAATTTATTAATTTA
TTTTATTTATTAATTGTTAATTTAAGATTGATTCGTTGAATTGTTAAAAA
AAATTTGTAATGGTAGAAGCAATCTAACGTCATTTTACTTCAAAAGTGCC
CTGCGTTTCTCATATTGTACTTGCTAATGTCCGATAACTATTACGTATCA
TTAAAAGTTTTGTGGGGCCATTTCATTTTATATCCATACAGGAGGTTGGA
CGAACATTTCCAGGGGATAGCCCGATAAGAATCCCAGGGGGTAAAAGACT
GATTTAAATATGTCCACTAGACCAGCGTCCGAGATTCAGAAAAGGCCTTA
AAAATGGTTTTCGTAGGGCACCCCTTAGATCAAGACAAATTTTTGATATT
ATGCTCCTAATAGGGTGTGGAATTGACAAAACAATTTTCCCTTCGAATCT
CCTGCAGTTTTCGAATGAATCGATTTTTAGTTAATCGATAGAACTTATCA
AGGGTCCCCCTTNCAAAAAAATTTTCCCTTCGAATCTCCTGCAGTTTTCG
AATGAATCGATTTTTAGTTAATCGATAGAACTTATCAAGGGTCCCCCTTT
ACTAACGGTTTTTTGAAGTCTGAAAATCAAATATCTGAGGCTACCAACGG
ATTCAGCGTGAAAAGTAGATAAAGAAAATGGGGTTATTTGTTAAGTTTCG
TCCACCCGGTGCCGAGAAATGGCATTTTTAAGGCGAAAAATCGACGTTTT
TGGCGTTTTTCGATGACGTCAGCATTTTTCTGGGAGTATTTTCAGAAAAA
ATCATTCCCACAGCTGGATAGCCCTGAATTAGTAGTACTCGTATTTTTTT
CTGTAAACCGACGTCCAAAATATTCTGACGAATGCCGTAAATTTGGCCTT
TTAATACCGAGAAACGGGTCATTTTACCGACAAATTCCGAAATACGAGTC
TACACCGGATTCTCGGGAGACACCCTTAACTTGACCAATTACTATTAACA
TTTTTTCCCCTCATTTTCCTAGCCGACTCGTGAACAATATCGCAAAGTAT
TCATGATCGCGGCAAGTATTTGTGTAATTGGTGGAACGTTCTGTAATGTT
TTTGTGAGTGGAGAATTACAACCATGGAATGATATTTATCATGACGAAGA
AAATTTTAATGGTAGTGACGAGGAACAGGTTTTAATAAACTCGTCAAATA
GTATCAATGATGATGAACTTGTTGATAATTATGTTAGGACGTAAAACTCT
TTTTAAATATAAGACATATCAAGGCCATTTCTTTTACTTTACAAACGAAC
ATGTAAGTTTTCGTTGTAAAGTTTCTTGAATTCGGTTGACTTATCAAGTC
CATATTATAGTTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTAAAGCC
TCATGAATTCGGTTGACTTATCAAGTCCATATTATAATTATTTTACAAAC
GAGCTTGTAAGTTTTCTTTGTGAAGCCTCATGAATTCGGTTGACTCATCA
AGTCCATATTATAGTTATTTTACAAACGAGCTTGTAAGTTTTCTTTGTAA
AGTCTCATGAATTCGGTTGAATTATCAAGGCAGTGACGAGGAACAAGTTT
TAATAAACTCGTCAAACAGTATCAATATGATGAACTTGTTGATAATTATG
TTANAGGAACAAGTTTTAATAAACCCGTCAAACAGTATCAATATGATGAA
CTTGTTGATAATTATGTTAGTACGTTAATTTATTTTCAGATATAAGCTCC
TTATAACTTTGTCAGAGATAACACGTCATCTTTCTTTAATGAATATTTCG
GCCAACTGGCTTTTTTCAAAATAAAGCATTTAGCTCATTATAATGGAGGC
TTCATAACTAGAATTTTTCCGAATAATTAGTACAACTTTTCTGGTACCTT
CAGTTAACAATGCCTGTTCAAGTTATGGAGACGCCGCTATCATTTGCTAG
AATTTGATCAAATCTTTGTGTAGGGTATCTTTTAGAAACAGAATTTTCTG
AAAACTTTGGGATTTTAGTCCCATGTATTGTCCATTTTTCGATCCTCAGC
GATACTTTGACATCAATTATTGCCAAGGATAGTATAGCCCGACATGCGAA
TTGTGCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037855XLOC_037855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060172-exon-scaffold_336-1575043694:173729..173761TCONS_00060172-exon-scaffold_336-1575043694:173729..173761Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1575043694:171836..171985TCONS_00060172-exon-scaffold_336-1575043694:171836..171985Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1575043694:171026..171155TCONS_00060172-exon-scaffold_336-1575043694:171026..171155Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1575043694:170147..170280TCONS_00060172-exon-scaffold_336-1575043694:170147..170280Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1575043694:168847..168957TCONS_00060172-exon-scaffold_336-1575043694:168847..168957Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1575043694:160852..161939TCONS_00060172-exon-scaffold_336-1575043694:160852..161939Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1510915933:173729..173761TCONS_00060172-exon-scaffold_336-1510915933:173729..173761Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1510915933:171836..171985TCONS_00060172-exon-scaffold_336-1510915933:171836..171985Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1510915933:171026..171155TCONS_00060172-exon-scaffold_336-1510915933:171026..171155Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1510915933:170147..170280TCONS_00060172-exon-scaffold_336-1510915933:170147..170280Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1510915933:168847..168957TCONS_00060172-exon-scaffold_336-1510915933:168847..168957Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1510915933:160852..161939TCONS_00060172-exon-scaffold_336-1510915933:160852..161939Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1491911889:173729..173761TCONS_00060172-exon-scaffold_336-1491911889:173729..173761Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1491911889:171836..171985TCONS_00060172-exon-scaffold_336-1491911889:171836..171985Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1491911889:171026..171155TCONS_00060172-exon-scaffold_336-1491911889:171026..171155Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1491911889:170147..170280TCONS_00060172-exon-scaffold_336-1491911889:170147..170280Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1491911889:168847..168957TCONS_00060172-exon-scaffold_336-1491911889:168847..168957Clytia hemisphaericaexon
TCONS_00060172-exon-scaffold_336-1491911889:160852..161939TCONS_00060172-exon-scaffold_336-1491911889:160852..161939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:160852..173761 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.846947	0.832392	0.714697	0.631281	0.140612	0.127858	0.350062	0.419808	0.0793844	0.311694	0.575773	0.623306	0.000124796	0.573963	5.22242	1.12596	0.640305	1.12674	1.27402	0.771754	1.9732	1.15338	1.57096	1.40282	0.260324	0.287314	0.816601	1.32961	1.45056	1.60909
Blast
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BLAST of TCONS_00060172 vs. Swiss-Prot (Human)
Match: VGLU1 (Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.020e-42
Identity = 94/239 (39.33%), Postives = 136/239 (56.90%), Query Frame = 1 
Query:   46 PWSHILTSRPVWAIMIGLFSHCWVWYMLLTGLPSYFSEVLDFKLKNNGFLSALPYLSSFVVQQIGGWFADYLRKNWI-STTAARRLAGILAFYPSAGFLLLVSYAGCDQIALSVGYLVLAVTFITLNQIGLICSQVDIAPRYVGIIMGLANSAGTIAGCITPSVTGYFTNEHPTREQYRKVFMIAASICVIGGTFCNVFVSGELQPW---NDIYHDEENFNGSDEEQVLINSSNSINDD 750
            PW    TS PV+AI++  F   W +Y+LL   P+YF EV  F++   G +SALP+L   ++  IGG  AD+LR   I STT  R+L     F   A  LL+V Y+    +A+S  +LVLAV F      G   + +DIAPRY  I+MG++N  GT++G + P + G  T +H TRE+++ VF+IA+ +   G  F  VF SGE QPW    ++  ++  F G D+   L  S +S  +D
Sbjct:  294 PWRRFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGLVSALPHLVMTIIVPIGGQIADFLRSRRIMSTTNVRKLMNCGGFGMEATLLLVVGYSHSKGVAIS--FLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMT-KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPEEMSEEKCGFVGHDQ---LAGSDDSEMED 526
The following BLAST results are available for this feature:
BLAST of TCONS_00060172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU12.020e-4239.33Vesicular glutamate transporter 1 OS=Homo sapiens ... [more]
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