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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060167 ID=TCONS_00060167|Name=TCONS_00060167|organism=Clytia hemisphaerica|type=transcript|length=1765bp
CAGTATTTAAAATTTAAGAATGCGGGTTAATTGCTTTTTCAGGAGCTAGA
TGTGAAACTTGTACTCACTATCGAAGTGTCCTACATGCAATGAGATCAAG
AAAAAGACGATCTGATGAAGGTGTTATGTCACCAAACACCAACAACAGGT
TATGATTTTCAGGTTTTgaattttagtttgaaaattcaaCGAATTACTTG
TGActgataaattattttgtttctttaccattcttttgaattttcataat
ttaaaaattgataacGGAACAGAAAAGTACCCTAGTTTGAATGAAATTTC
CACGAATGTGACGATTATTGCTATGGTGTATTTAAAAATTGTTGGCagaa
tcattttattttgaatatcgaaaagtatttattttaagTAGAACATGTTT
TGTTTTCAGATGGATGAACCGCGAACATTTAATTAATAAACTTGAATTGT
ACCAAAAAGATAGAGCTAACCTTGCCAGGAGACTTAACCagacaaaaaaa
tgtcagaaaacatgtttttgaagacGGGGTGGCTTTAGATAAAGTTTCGG
AGGACGTTTGCAGCGCTGTTCTTCAGAAAAGTGACAATCCTTTTAGCGAG
GACAGTCCACCACACTTGTTGCGGAGTCAGCAAAAGAAGTTTGCCATGAC
CGATCCGAGTGGAATGAGATGGCACCCCCTTATTGTTAGATGGAGTTTGA
CCATTTATTTGAAATCACCTGCAACCTACAAACACATCCAATCAGGACCA
AACTATATTACTAAAGTACATCAATTTCACAACTCCCGGATGCGGTTTTA
ATCCAGACATTATCAAGCGTCTCTTTGACAAAGTTATAGTGACTTGCAAA
CAAGAATTTCAACGGAATGTTGGCTTAGTTTTCGATGAGATGAAAATTAA
AAGTGGTTTGGTTTTTGATAAATTAACAGGCCGATTGGTTGGATTCACTG
AAATGGGTGATATGAACGATGAGCTTGAGCACTTCGAGAGGTTTTGCTCT
GAGGATACTATGAAAGAAAAATCTGTTGCTAAATATTTTATGGTTTTCAT
GGTCCGTGGCTTATGTTCAGGTCTTGAGTACGTCTTTGGACATTTTGCTA
GTGAGGGCTTCACATCTGATCAAATCTTCCACTGTGCACACGAAGCGATT
GGTATCCTTGAAAGTATAGGATTGAAAGTACGGGCTGTAACAGCTGATGG
AGCAAGTCCAAATAGAAAATACTTTAAGTTACACAAGCTTCCAGAAAATA
CCAAGGAAACCAATTTATTTCATGGAAATGTTTACTGGGCTTACAGCCCT
TGGGCATTCTCATCCAAAAGAAAGATCTACTTTTTTTCTGATCCACCCCA
TCTAATGAAAACTACACGCAACAACCTGGAAAATCCGCATGCAAACAAAA
AAAGCAGGAATGTAGTTTTCGATGGAAAAGAGATGGGCTGGCACCAAATC
CTGGACTTGTACGACTGGGATCTTGGGCCCTCGCGCTACTGTTTCGGCAT
CAGATTTGGTCATAAGTTGAGGCATGAGCATATCAAGTTGGACCCCAGAA
GCAGGATGCGTGTTAATCTAGCAGCTCAAGTTTTAAGCTGCACTGTTGCT
GACATTGCTGGATGAGCAAAAAGCATCTGGTACTGAATCGTTATCAAAAT
TTGTTCGTTTAATGGACAcattttttgattgtttgaatgTTTCCAGGCTA
ACAAACACATCAGGAAAGAAAGCCAAGGATAAATATACTGGTTCAAAAAT
GATTGGAGGTTTGAG Run BLAST on NCBI transcript from alignment at scaffold_336:87830..91188- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060167 ID=TCONS_00060167|Name=TCONS_00060167|organism=Clytia hemisphaerica|type=transcript|length=3359bp|location=Sequence derived from alignment at scaffold_336:87830..91188- (Clytia hemisphaerica)
CAGTATTTAAAATTTAAGAATGCGGGTTAATTGCTTTTTCAGGAGCTAGA
TGTGAAACTTGTACTCACTATCGAAGTGTCCTACATGCAATGAGATCAAG
AAAAAGACGATCTGATGAAGGTGTTATGTCACCAAACACCAACAACAGGT
TATGATTTTCAGGTTTTGAATTTTAGTTTGAAAATTCAACGAATTACTTG
TGACTGATAAATTATTTTGTTTCTTTACCATTCTTTTGAATTTTCATAAT
TTAAAAATTGATAACGGAACAGAAAAGTACCCTAGTTTGAATGAAATTTC
CACGAATGTGACGATTATTGCTATGGTGTATTTAAAAATTGTTGGCAGAA
TCATTTTATTTTGAATATCGAAAAGTATTTATTTTAAGTAGAACATGTTT
TGTTTTCAGATGGATGAACCGCGAACATTTAATTAATAAACTTGAATTGT
ACCAAAAAGATAGAGCTAACCTTGCCAGGAGACTTAACCAGACAAAAAAA
TGTCAGAAAACATGTTTTTGAAGACGGGGTGGCTTTAGATAAAGTTTCGG
AGGACGTTTGCAGCGCTGTTCTTCAGAAAAGTGACAATCCTTTTAGCGAG
GACAGTCCACCACACTTGTTGCGGAGTCAGCAAAAGAAGTTTGCCATGAC
CGATCCGAGTGGAATGAGATGGCACCCCCTTATTGTTAGATGGAGTTTGA
CCATTTATTTGAAATCACCTGCAACCTACAAACACATCCAATCAGGACCA
AACTATATTACTAAAGTACATCAATTTCACAACTCCCGGATGCGGTTTTA
ATCCAGACATTATCAAGCGTCTCTTTGACAAAGTTATAGTGACTTGCAAA
CAAGAATTTCAACGGAATGTTGGCTTAGTTTTCGATGAGATGAAAATTAA
AGTGAGTTAAAAAGTGTGATTTCTGAAATAAGTTTTTTGCTTTTGACTAA
TTTTGAACATTTTTACTGAACTAATCTTTTGTCTATTTATGTCAACTTTC
TACCAAGCCTTTCTATTCAATTCAGTAGTGTTTTTACAGATAAGGTTTTT
ATTGTGTCTTTAGAGTGGTTTGGTTTTTGATAAATTAACAGGCCGATTGG
TTGGATTCACTGAAATGGGTGATATGAACGATGAGCTTGAGCACTTCGAG
AGGTTTTGCTCTGAGGATACTATGAAAGAAAAATCTGTTGCTAAATATTT
TATGGTTTTCATGGTCCGTGGCTTATGTTCAGGTCTTGAGTACGTCTTTG
GACATTTTGCTAGTGAGGGCTTCACATCTGATCAAATCTTCCACTGTGCA
CACGAAGCGATTGGTATCCTTGAAAGTATAGGATTGAAAGTACGGGCTGT
AACAGCTGATGGAGCAAGTCCAAATAGAAAATACTTTAAGTTACACAAGC
TTCCAGAAAATACCAAGGAAACCAATTTATTTCATGGAAATGTTTACTGG
GCTTACAGCCCTTGGGCATTCTCATCCAAAAGAAAGATCTACTTTTTTTC
TGATCCACCCCATCTAATGAAAACTACACGCAACAACCTGGAAAATCCGC
ATGCAAACAAAAAAAGCAGGAATGTAGTTGTAAATCTATTGATTTTCTTT
TTATTTTCCACTGCATTTATATTCAAACAACAAAATAGTACCCAAAATCA
TGCCTCTAGTTACTCTGAAATTTATGTTTTTGAAATTATGGTGTATGTTG
TTTAGTATGTATGTTGTCGTTTTATGTTTGTCTCTAAAAGTTTTCATTTT
GATAATTTAGTTCGATGGAAAAGAGATGGGCTGGCACCAAATCCTGGACT
TGTACGACTGGGATCTTGGGCCCTCGCGCTACTGTTTCGGCATCAGATTT
GGTCATAAGTTGAGGCATGAGCATATCAAGTTGGACCCCAGAAGCAGGAT
GCGTGTTAATCTAGCAGCTCAAGTACAAACTGAATCATATTGTACATATT
TGCATAAATAAACTTTCCCACAAGATATTACAGTCTTNGTCTAGCAGCTC
AAGTACAAAGTGAATCATATTGTACATATTTGCATAAATAAACTTTCCCA
CAAGAAATTACAGTCTTGCAATACAGCTGTTAATCATTTTTAAGAAAATA
GACTAGATGATAAATATCACATAGGCAGTCAATACAAATTGTAAAATTGA
CAACAGTAAAATGTTATAATTTTTTCAGATGTAGAACAATAGACATGTTT
TTGTTGATGTTAATTAGCATGGCTTTAACCCTATTCGTACTAGAGGGGGG
GGGCTCTTTCTGTTCGGAGGTCAAACTATTGCTAATAGCTCCTGAAATAA
TAAAGCTTTTGCCGTGAAATTTTCTGTAAATTCCTAACTTTTATTTAGCT
TCAAAATAAAAAAAAATTTGACACCTAAATATTTTCACACCTTGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTAAGGTGTCACAAAAATTGACACTTTTCCAATACAAATTTATTT
TCATTGTCAAATATATCGTTTAAACCGTAATTTATTGAATATTTAGGATA
AAAACAGCATTTTAAACTCAGACAACTTTTTTCTAAAGCCTTTGTTAGAA
TACAATAGCTATTTATAAGAACAAAGGAAATTTTCGGTTTTTGCTCCCTT
TGGGCATGATGAGTGACGTCATCAAAAATTTTTTTTGTTTAAAGTTACCT
TACGTCACAAAGATCTTGTGTGCCAAATTTTATCTAAAAAGACCCACTAG
ATCAAAAGTTAAGGGGTGGTACAGGAAAAGCCCCCCCCCCCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTAGTTCTGAACCGCCCCTAAAAGCCTAGGTTGAATAGGGTTAAATG
GTAACTAGCCATAGTAAAATGTTTCTCTGTAAGATTTTGCCAGAGAGGCT
TAATAATCCATTTGTGTAAAAATTGCAGGACTATGATTTTGTAGCAGAAT
TTTTTTCTCTTTTCTTTATTTAGGTTTTAAGCTGCACTGTTGCTGACATT
GCTGGATGAGCAAAAAGCATCTGGTACTGAATCGTTATCAAAATTTGTTC
GTTTAATGGACACATTTTTTGATTGTTTGAATGTTTCCAGGCTAACAAAC
ACATCAGGAAAGAAAGCCAAGGATAAATATACTGGTTCAAAAATGATTGG
AGGTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060167-exon-scaffold_336-1575043694:90288..91188 | TCONS_00060167-exon-scaffold_336-1575043694:90288..91188 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1575043694:89610..90125 | TCONS_00060167-exon-scaffold_336-1575043694:89610..90125 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1575043694:89267..89428 | TCONS_00060167-exon-scaffold_336-1575043694:89267..89428 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1575043694:87830..88015 | TCONS_00060167-exon-scaffold_336-1575043694:87830..88015 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1510915933:90288..91188 | TCONS_00060167-exon-scaffold_336-1510915933:90288..91188 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1510915933:89610..90125 | TCONS_00060167-exon-scaffold_336-1510915933:89610..90125 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1510915933:89267..89428 | TCONS_00060167-exon-scaffold_336-1510915933:89267..89428 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1510915933:87830..88015 | TCONS_00060167-exon-scaffold_336-1510915933:87830..88015 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1491911889:90288..91188 | TCONS_00060167-exon-scaffold_336-1491911889:90288..91188 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1491911889:89610..90125 | TCONS_00060167-exon-scaffold_336-1491911889:89610..90125 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1491911889:89267..89428 | TCONS_00060167-exon-scaffold_336-1491911889:89267..89428 | Clytia hemisphaerica | exon |
| TCONS_00060167-exon-scaffold_336-1491911889:87830..88015 | TCONS_00060167-exon-scaffold_336-1491911889:87830..88015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:87830..91188 - |
Blast
The following BLAST results are available for this feature:
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