TCONS_00060165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060165
Unique NameTCONS_00060165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060165 ID=TCONS_00060165|Name=TCONS_00060165|organism=Clytia hemisphaerica|type=transcript|length=1364bp
TATACGTCTTGAAGTTACGTacagattcaaaatttttgttaatgCCTAAT
GACTGCTTCAAGCTATTGAGtggactttttattttgaaatttggtgATGG
AAAGTCTGGGTTTCGGCCTATCCTTCTGCCATTAATAGATTCAAATTTGA
AGTGGTATGCATATCTTGCTTCTCTCAATCGTACTGCTGATCCTATCTTT
GGATATAAAGGCTGATGCATTGGCTAATTATGATGATTTACCACGTCTAT
CAAAGCAAAGGAACCAATGTATCCCAGTTGAAATTCCACAATGTAAACGT
TGGTATGACCAAAGAAGACCACCAAACATTTATACAGCTACCACAGCTGA
ATACCGGAATGTGAAAAGTCTTGTTTCACAGTTATCTTTATTACCAAAAA
ATTATAGAGAATGTGTAAATGACGCTACATTTTTACTGTGTGCACTTTAT
TCACCAGTCTGTATTAAAGGAAGTAAACCGTTGAAACCTTGTAGAGAGTT
ATGCGTTAAATGGCGAAAGAATTGTCGAAGATTGGATATTTTTAGTAATG
TCGCTCTTCCTGACAAGCTGAGAGATTGTAATGAATTGCCAGAGTTTCAT
AATTCAATGTGTATACAACCAAGCAGTTTCATAACCAAAGAACAAGAAGA
AAAGAAATCGAATAAAGATTCTTCAAAACACAAAACGTGCGATTGTAAAG
ACTTCAAGCAACCAACGCCTAAATATCGTCATTTTCGGAAAGCAGCCTAC
GTTATTGAAGCAACAATCAATTCAAGAGAAACATTAGCCAATGGGAACAC
TAAAATCATACTCGACGTTTTAAAAATCTACAAGCAAGGTAAAATTTCGA
TCAAATTCGGTAAACTACGGATGTGGTCATCTTGTTTGTGTCACAAAGAC
ATCCAATATGGCGATAAGAAGTATTTCTTGATTGTTGACGAAAACCAtca
caaaaagaagaaaaatttagaaatcaGTAAGACAACACTCGTTCTTGATG
CTAcacaatatgaaaataaaattgacaaaTGGTACAAGAAATGTTTGAAG
CGTAAAAGTTGCTAATAATCATTGCTATTATGAGTGacattttctgataa
atattcTGGCAATCTGAATGGAACTAATAGCAGATCTGTTTAACATGTCT
TTACAAGAACATCTAATGTTTGCGAACCCTTTTGCTCTTAACTCTTTTGT
GAGCTTTAAACCtaaaattattcttaaaatgttcttatttcttaagaaat
tgggtgtttcagAGTCTGAAATAACcattttaacttgttcttaagccatc
aaagccttgttcttataaagtaaccTGTATCGACAGAACAAGTAAAATGA
TTCTGTTAGTGAtc
Run BLAST on NCBI

transcript from alignment at scaffold_336:47398..54066-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060165 ID=TCONS_00060165|Name=TCONS_00060165|organism=Clytia hemisphaerica|type=transcript|length=6669bp|location=Sequence derived from alignment at scaffold_336:47398..54066- (Clytia hemisphaerica)
TATACGTCTTGAAGTTACGTACAGATTCAAAATTTTTGTTAATGCCTAAT
GACTGCTTCAAGCTATTGAGTGGACTTTTTATTTTGAAATTTGGTGATGG
AAAGTCTGGGTTTCGGCCTATCCTTCTGCCATTAATAGGTGAATATTTAT
TGAAATGCTCTTCAGGGCAAATTCTGCAAAGAAAATACTGAAAGACTTAT
AATATAAAATGGAATAATTAGTCTCTATTTTTGAGTGGGTCTTAAAATAT
TCTAATGTATCATTTAAATTTGTCGGCACACTTCACAATGTCGGTGTGAA
TGTTAACTTCCGGAGCAAAATAAAGAAAACCGTTGTAAATTATCTAGTTA
TGAACAACCCTTATTTCAAGTCAATCGAGTGACAGATAAAAATATAAAGT
TTAAAAACAGATAAGTGGATTACGCTGTTAAACCCCCCTTTCATCTCTGT
CAAATCCTAGACGAATGTCATTGGCAAAAAGATGCATCTTTGACAAATAT
TTATCTTTTGTTTTTGTTTGAAAATCGTTTAAAGGTATTCGTGACTGATA
TTCATGAAAAAAAAACTATTTGTTCAGATCTGACTTAGAAAACGTTTTCG
TTCTCTGATAGGTTAACAACCAGTTAGCTGGTATTTTGTGGTTGGTATCT
GTTACATATTTTTCTCATGAATTCAATTTGGATTCTTTGAATGAAGATAG
ATTACTCATAAGCTTTGTTCTGAATTATTCGAAGTTATGAAATAACAAAT
ATACTACCTAGCTGGTACACACAAATTCATTTCAATGTGTATTTGATATG
TTTACAACGTCCATATAACGATAGATGAACGTTAAAACACGTTGGTGCCA
GCTGGGTATCGAACTAAATTCGGGTTCATTGATTTTCAACGGTACTTGTA
GATTTGAATAACTTTAGTAGTCTTAAATTGTTGATTTTCTTTGACTTTTT
TAGATTCAAATTTGAAGTGGTATGCATATCTTGCTTCTCTCAATCGTACT
GCTGATCCTATCTTTGGATATAAAGGCTGATGCATTGGCTAATTATGATG
ATTTACCACGTCTATCAAAGCAAAGGAACCAATGTATCCCAGTTGAAATT
CCACAATGTAAACGTTGGTATGACCAAAGAAGACCACCAAACATTTATAC
AGCTACCACAGCTGAATACCGGAATGTGAAAAGTCTTGTTTCACAGTTAT
CTTTATTACCAAAAAATTATAGAGAATGTGTAAATGACGCTACATTTTTA
CTGTGTGCACTTTATTCACCAGTCTGTATTAAAGGAAGTAAACCGTTGAA
ACCTTGTAGAGAGTTATGCGTTAAATGGCGAAAGAATTGTCGAAGATTGG
ATATTTTTAGTAATGTCGCTCTTCCTGACAAGCTGAGAGATTGTAATGAA
TTGCCAGAGTTTCATAATTCAATGTGTATACAACCAAGCAGTTTCATAAC
CAAAGAACAAGGTATGTTTCCAGGGACTATGGCATCAGTTGGGCACATAC
CCTGGTTTGAGCATATTTTTTCAAAGCAAAAGGAAAATCTTCTAATTCGT
GATATTTATGACATAAATTTATGGGAGCGCCTCGGTTTTTGTCAATAATA
GGAAATTTTAAACAACTTTTCTCTAACCTAAATTGGTAAAATCCCGGGAT
GTTTCCGTATTTAAACTCGTCATGAAAATCATGAATCCATGTATAGAAAT
TTTGAGAAAAGTTTAGTTTTAGGCATTTACAAAAGTAAAGTTGCCGCTGC
AAACTGCTCTCGATGCGCTATAGACAATCACACCCCTTTGAACCGGTGGA
ACCTCCTGTCTCAATTAAAGGATTGATAAATTCGATTATATTATCCCGGT
GAAAGAAATAGCCTAAGGTCCAACCCCCTCTTTAGAAAACTACTCTGATT
CTAATCTCAACTTGAAAACACACAAATATATGAGAATCCTCCCATAGGTC
GTTGAGTTGTAAACAAAAGATAGGGATTTTCAATTAAGCTTGGTCGGTAA
GTTTGTATTTGGCATCTCCATTTTATCCCATCGAGTTATTGAGACCGGGT
TTTTTAATCCTAATGTGTGATTAATTTATGACTCTATTCTAATTTGCCGT
CTCAAGTACGAAGTCTTTTCCTAATAGAAACAATAAATATCTGTTAGAAT
ATCTTCCTTAAATGGGAAATTTAAACTCATTAGTTTCCATGCCTCCTTCT
TTCTTATTAGGTCATTGATTCAGGGATCTACATATACATCAGTATCTTTC
CACATACACATGTTTTGTATCATGTTAAACCTAAAAACGCCTCTGCCTCA
CTCGTCTCACTGCACCAGTGGAGCTTCTTTTCACAGTGAAATGAAACTTT
CTATCAAAATCCCAATGGTGATAGAAATTATCTTTCTCAGCTATTTTCCC
TTCTCAAATCTCAAACAATAATAGACACATAAGGCATAGTTTATTGGATA
GATCTTGCAGTGAACACGCCTTTAGTATCGAAATAAATATATGTTACATT
ATAAAAATAAAATTGGTTACACTAAGTATTACAGTGGTCATTTGTGTAAA
TTTTGACATCACGCTAGCTAATAATAATAAAAAATACTTTTTTAGAATGC
ATGGTTATTGTTAATATCCTCTAAAGTAATATACTTGTATTGTTGAAATA
ATTTTACATGTTCAAATTCATCAAATGAAAATATGTGTATAATTACGTAG
AACTTGAGAATAACTAAATTGTACTGTGACGAAGCATGTAGCGTAAAACC
CCCAGTGGCTGTTTATTCTGGAGGAAACATTATCCCCGACCAAGGCAGCC
GTCACGCCGACCTTCGGAGGTTAAAGGTCCTCCCACTTTATAATGTGAAA
TATAACGTAAATAATTCAAAACATTTTATAGTTTGGTTTCTGGTATAAAG
TTCTTTCGTCGTTTCAAATGTCCACGTTAGAGTGTCGAATTTTTGTAATG
TAACGTATTTTGCAACTGTGTAATTCGAATGTATGTTTCAATGATAGTTG
TGTCCCGGTATCGCTCCAGTAGAACATCTTGATCGTCGGGTCATGGTTGC
CCAGCATTGATAAACGGGTTTTCCAGGTTCAGGAGCGTGTAAGAAAAAGA
AATAGCATTAATGTTATAACAGTAAACTTAAATGTGAAACTTAACTTAGT
TCAAGGCGTATGCAAGAGCAAGGATTGACAAGCTGACAAGCAGCTTCTTT
AAAGCATATTGCGCATGCGCAGTTTGTTCCAATCTGCGCAAGATGGTAGA
TTTTCGTACGAAAAACGCGGAGAAGCTCGATTTCCACCTTTCTTCGATCG
TTGGAAATCACACTGTTCTTAGGTAAAAAAATCTAACTAGATGTGGATGG
TTTATGAGTGCAATTTTTTCATTGAACTTTTAATGAGGCCCCCCCAGCGG
CACCCTTAATCTTGCCATCACGCAAAAAAATTTTCTCCATCATGCATCAC
GAAAATTTGTCATCACGCAAAAAATAGTGAAAAATAGCCCAAATCACGCA
TCACGCCTCAAATTTTTGCCCTATCACGCATCACGCCATCACGCCAAAAA
AAAATCTCCAATCACGCCATCACGCAAGAAAAAAGTCCCAATCACGCCAT
CACGCAAACGGCTGGGGGGGGGCTCTTAAATGGGATGAAAAAAGATTTTC
CAGTTGGGTTGAAATTGTACGGAATCCTTTCCACCGGGAATGAAAAATTT
GAACAAATCTTTCAGTGAGAGGGGGATCCCAACGGGTCTGTGACACAGGG
GTCTAAAAAACGGGGTTTTTTTAGCTTAAAATTTACCAATTTTGTTTGAA
TCAGTTTAAGTGGGATGCATCCCGGGGGAGGCACTCAGGCAAACGGGTCA
TGCCGCTGATCAGGGCCTCTTTGTTAGGTTCTAAAGACATCTAACAGGGT
CCCTAATTTACTAATTTTCAAGATTTGTATCGAACAGGATCGACTTTTGG
TTATTTTGAACAATTTTTAGAGTCCACCCTAATAAGATATTTTTCAATCT
TTTGTCAATATTTTGTCATTTTTGCTACTTGTTGTAGGAATTTTTTTTCG
ATTTTTCGTTCCGACAGGGTCCCAAATTTATTACATTCATATGACAGGGT
CCAAAACTTAAATCTCTTAAATGTAATTTCATTTGCAAGATCCAAATGTC
TACCGCTGAATATCAAATGGTTATTCATTACTTTTCAGAAGAAAAGAAAT
CGAATAAAGATTCTTCAAAACACAAAACGTGCGATTGTAAAGACTTCAAG
CAACCAACGCCTAAATATCGTCATTTTCGGAAAGCAGCCTACGGTCAGTA
AATATCTTGTTCAATTCATATTAATAGTTTATTTCGGGCAGTCGAAGAAA
ATTAGAGAAGTTAAGGGTTCAAATTTGAAGGGGGTAATAGGTTTCCGAGG
TTCCGAGCCAAAGTTCGAAAATTGACCCTTTAGACTGATATTTTGAAAGT
TTAGCTCCTTTTTGACGAATTTACGACCCTTTTCCCAATTTTTAGCCTAA
ATTTTGAAACTTAAATTCAAATTACAAGAGTCTATGGTCCTGGGAGTTTA
TCCTGTTTTTTTCTTAATTTTTGGATTTTGCAGAGACTCAATGGCGAATA
TATAGACCTTTTTGACTCGTACATACCCGACACCCATTCTCTCTCTGTCC
TAGGAATGGAACTTACACACGTTTTTAATAAAGACATCAAAGGTTTTGAA
GCTTTGATGAGATGTTTTTAACTTTTTGAGTTTTGAGCCAACAATGTTTT
TAAGTTGTTTTGAGTAATTTTTTCTTATATATTTTGTTCAAATAAAGTAC
GTAAAGAGGGAAATTAAGCCAAGTTCAAGTAGAAATAAAGGTTTTCCCAC
CGAATGGGTAAATAGCTATGAATCGATTGCAGCTATCATAAATGGAAAAC
TATACTCCAATTTTTGTCTCCGCTGAAAATAATCAAATATGTAACAACCT
CACTGCAAAACATGTGCTTTCTTTCAATCCCCCTGAATTCTTTGATACGT
GAAAACAATTGAATTCGAATCCCCGGCAATAAAAAACATTATCCAATCCA
CATCGACTTTCAGTCCGTTATTTTTACCCCCCCCCCCCCCAAAAAAAAAA
AAAAATTTCCAACCCCCACCGACTTTTTTTTCTTTTTTTTTTCCCCCCCC
CCCCCCACAAGCTGAAAAAATCTTACGGGGTCTGTAAGAAGTAACCTGAT
AACAGCTGTTCATAATTTTCTTGCGTGCACGGTAAACCTCTGAAGGCACT
TCAAAATTATACATCTGAGGAAAATAGTCCTCCCGCGGAAAATTTTACAA
CAAGAATCTTGTTGTGCGCCATGCGCCAGAAAGTCAAAAATTAATACGGC
GCCCTATTCATAAACACAATGACGCAACTTTGTTGTCATCCCCAGTCCTT
TTAGACGAACGCGGTCCTTACGATTTCGAGATTGCATATTCGTCAGATTG
TATGTTTTCACCCATTCCTTTAGAGCTTCAGCGTGGTGGGCAGAAAACAA
CCACAATCTGATCTCAGGTTAGTGAGAAGGGGGTGTGTATAAGGACAACA
AAAAAATATGATGCAATCACCAAACTTATATTAAAGTATTTTCTTCCTTG
ATAGTTATTGAAGCAACAATCAATTCAAGAGAAACATTAGCCAATGGGAA
CACTAAAATCATACTCGACGTTTTAAAAATCTACAAGCAAGGTAAATTTT
GGCTAAAGTTCATCTACTAACTCCAAGAAGATTTTGCAGCATACTTCACT
TTGGAGACCTCAATTTTATACAAAACCAAAACATTATATATGAAATGTAG
TATTACCGTGAATCTTATCGATTCCGTCCGTTTTGAGGGTCATTTTTCTT
GATAACAGGGTAGATATTATAGTTTCTAGGGCGTTTGGAAGTTTTTTGTG
TTTGCATTCTATGTTCGTGTCATTGCTTAAAAAAATCATACTGCACTTAT
TTTCCTACAAGACATTCCTGTATCGGTGACCAGGTGGGGATATCTAAGCC
ATTGGGGACCCAGATCGGGGAAAGAATTGTAAAGTAAACTTTTACCCAGT
CCCTTGCTTAGTCCCTTAGCTCGCTTTTTATGATATAACACCCTCGATGG
TATCGAAAGAGGAAGCTGTAATTTGAAATGTTTTTGTTTGCAGGTAAAAT
TTCGATCAAATTCGGTAAACTACGGATGTGGTCATCTTGTTTGTGTCACA
AAGACATCCAATATGGCGATAAGAAGTATTTCTTGATTGTTGACGAAAAC
CATCACAAAAAGAAGAAAAATTTAGAAATCAGTAAGACAACACTCGTTCT
TGATGCTACACAATATGAAAATAAAATTGACAAATGGTACAAGAAATGTT
TGAAGCGTAAAAGTTGCTAATAATCATTGCTATTATGAGTGACATTTTCT
GATAAATATTCTGGCAATCTGAATGGAACTAATAGCAGATCTGTTTAACA
TGTCTTTACAAGAACATCTAATGTTTGCGAACCCTTTTGCTCTTAACTCT
TTTGTGAGCTTTAAACCTAAAATTATTCTTAAAATGTTCTTATTTCTTAA
GAAATTGGGTGTTTCAGAGTCTGAAATAACCATTTTAACTTGTTCTTAAG
CCATCAAAGCCTTGTTCTTATAAAGTAACCTGTATCGACAGAACAAGTAA
AATGATTCTGTTAGTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037853XLOC_037853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060165-exon-scaffold_336-1575043694:53929..54066TCONS_00060165-exon-scaffold_336-1575043694:53929..54066Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1575043694:52606..53113TCONS_00060165-exon-scaffold_336-1575043694:52606..53113Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1575043694:49774..49878TCONS_00060165-exon-scaffold_336-1575043694:49774..49878Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1575043694:48376..48462TCONS_00060165-exon-scaffold_336-1575043694:48376..48462Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1575043694:47398..47923TCONS_00060165-exon-scaffold_336-1575043694:47398..47923Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1510915933:53929..54066TCONS_00060165-exon-scaffold_336-1510915933:53929..54066Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1510915933:52606..53113TCONS_00060165-exon-scaffold_336-1510915933:52606..53113Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1510915933:49774..49878TCONS_00060165-exon-scaffold_336-1510915933:49774..49878Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1510915933:48376..48462TCONS_00060165-exon-scaffold_336-1510915933:48376..48462Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1510915933:47398..47923TCONS_00060165-exon-scaffold_336-1510915933:47398..47923Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1491911889:53929..54066TCONS_00060165-exon-scaffold_336-1491911889:53929..54066Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1491911889:52606..53113TCONS_00060165-exon-scaffold_336-1491911889:52606..53113Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1491911889:49774..49878TCONS_00060165-exon-scaffold_336-1491911889:49774..49878Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1491911889:48376..48462TCONS_00060165-exon-scaffold_336-1491911889:48376..48462Clytia hemisphaericaexon
TCONS_00060165-exon-scaffold_336-1491911889:47398..47923TCONS_00060165-exon-scaffold_336-1491911889:47398..47923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:47398..54066 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.400848	0	0	0	0	0	0.558528	0	2.31338e-07	1.60457e-09	7.95741e-09	0.551533	0	0
Blast
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BLAST of TCONS_00060165 vs. Swiss-Prot (Human)
Match: SFRP3 (Secreted frizzled-related protein 3 OS=Homo sapiens GN=FRZB PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.660e-16
Identity = 62/220 (28.18%), Postives = 103/220 (46.82%), Query Frame = 1 
Query:  268 CIPVEIPQCKR--WYDQRRPPNIYTATTAEYRNVKSLVSQLSLLPKNYRECVNDATFLLCALYSPVCIKG--SKPLKPCRELCVKWRKNCRRLDIFSNVALPDKLRDCNELPEFHNSMCIQPSSFITKE-----QEEKKSNKDSSKHKTCDCKDFKQPTPKYRHFRKA-AYVIEATINSRETLANGNTKIILDVLKIYKQGKISIKFGKLRMWSS--CLC 891
            C PV IP CK   W   + P +++ +T A   N    + Q   L   +  C  D  F LCA+Y+P+C      +P+KPC+ +C + R+ C  + I    + P+ L  C ELP +   +CI P + +T +      +    N   +  + C CK  +     Y  FR    YVI A +   +T  +  T ++ +V +I K   ++I    + +++S  CLC
Sbjct:   35 CEPVRIPLCKSLPWNMTKMPNHLHHSTQA---NAILAIEQFEGLLGTH--CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPENL-ACEELPVYDRGVCISPEAIVTADGADFPMDSSNGNCRGASSERCKCKPIRATQKTY--FRNNYNYVIRAKVKEIKTKCHDVTAVV-EVKEILKSSLVNIPRDTVNLYTSSGCLC 245
The following BLAST results are available for this feature:
BLAST of TCONS_00060165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SFRP33.660e-1628.18Secreted frizzled-related protein 3 OS=Homo sapien... [more]
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