TCONS_00060164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060164
Unique NameTCONS_00060164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060164 ID=TCONS_00060164|Name=TCONS_00060164|organism=Clytia hemisphaerica|type=transcript|length=1327bp
CCCCCTTTCATCTCTGTCAAATCCTAGACGAATGTCATTGGCAAAAAGAT
GCATCTTTGACAAATAtttatcttttgtttttgtttgaaaatcgtTTAAA
GATTCAAATTTGAAGTGGTATGCATATCTTGCTTCTCTCAATCGTACTGC
TGATCCTATCTTTGGATATAAAGGCTGATGCATTGGCTAATTATGATGAT
TTACCACGTCTATCAAAGCAAAGGAACCAATGTATCCCAGTTGAAATTCC
ACAATGTAAACGTTGGTATGACCAAAGAAGACCACCAAACATTTATACAG
CTACCACAGCTGAATACCGGAATGTGAAAAGTCTTGTTTCACAGTTATCT
TTATTACCAAAAAATTATAGAGAATGTGTAAATGACGCTACATTTTTACT
GTGTGCACTTTATTCACCAGTCTGTATTAAAGGAAGTAAACCGTTGAAAC
CTTGTAGAGAGTTATGCGTTAAATGGCGAAAGAATTGTCGAAGATTGGAT
ATTTTTAGTAATGTCGCTCTTCCTGACAAGCTGAGAGATTGTAATGAATT
GCCAGAGTTTCATAATTCAATGTGTATACAACCAAGCAGTTTCATAACCA
AAGAACAAGAAGAAAAGAAATCGAATAAAGATTCTTCAAAACACAAAACG
TGCGATTGTAAAGACTTCAAGCAACCAACGCCTAAATATCGTCATTTTCG
GAAAGCAGCCTACGTTATTGAAGCAACAATCAATTCAAGAGAAACATTAG
CCAATGGGAACACTAAAATCATACTCGACGTTTTAAAAATCTACAAGCAA
GGTAAAATTTCGATCAAATTCGGTAAACTACGGATGTGGTCATCTTGTTT
GTGTCACAAAGACATCCAATATGGCGATAAGAAGTATTTCTTGATTGTTG
ACGAAAACCAtcacaaaaagaagaaaaatttagaaatcaGTAAGACAACA
CTCGTTCTTGATGCTAcacaatatgaaaataaaattgacaaaTGGTACAA
GAAATGTTTGAAGCGTAAAAGTTGCTAATAATCATTGCTATTATGAGTGa
cattttctgataaatattcTGGCAATCTGAATGGAACTAATAGCAGATCT
GTTTAACATGTCTTTACAAGAACATCTAATGTTTGCGAACCCTTTTGCTC
TTAACTCTTTTGTGAGCTTTAAACCtaaaattattcttaaaatgttctta
tttcttaagaaattgggtgtttcagAGTCTGAAATAACcattttaacttg
ttcttaagccatcaaagccttgttcttataaagtaaccTGTATCGACAGA
ACAAGTAAAATGATTCTGTTAGTGAtc
Run BLAST on NCBI

transcript from alignment at scaffold_336:47398..53633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060164 ID=TCONS_00060164|Name=TCONS_00060164|organism=Clytia hemisphaerica|type=transcript|length=6236bp|location=Sequence derived from alignment at scaffold_336:47398..53633- (Clytia hemisphaerica)
CCCCCTTTCATCTCTGTCAAATCCTAGACGAATGTCATTGGCAAAAAGAT
GCATCTTTGACAAATATTTATCTTTTGTTTTTGTTTGAAAATCGTTTAAA
GGTATTCGTGACTGATATTCATGAAAAAAAAACTATTTGTTCAGATCTGA
CTTAGAAAACGTTTTCGTTCTCTGATAGGTTAACAACCAGTTAGCTGGTA
TTTTGTGGTTGGTATCTGTTACATATTTTTCTCATGAATTCAATTTGGAT
TCTTTGAATGAAGATAGATTACTCATAAGCTTTGTTCTGAATTATTCGAA
GTTATGAAATAACAAATATACTACCTAGCTGGTACACACAAATTCATTTC
AATGTGTATTTGATATGTTTACAACGTCCATATAACGATAGATGAACGTT
AAAACACGTTGGTGCCAGCTGGGTATCGAACTAAATTCGGGTTCATTGAT
TTTCAACGGTACTTGTAGATTTGAATAACTTTAGTAGTCTTAAATTGTTG
ATTTTCTTTGACTTTTTTAGATTCAAATTTGAAGTGGTATGCATATCTTG
CTTCTCTCAATCGTACTGCTGATCCTATCTTTGGATATAAAGGCTGATGC
ATTGGCTAATTATGATGATTTACCACGTCTATCAAAGCAAAGGAACCAAT
GTATCCCAGTTGAAATTCCACAATGTAAACGTTGGTATGACCAAAGAAGA
CCACCAAACATTTATACAGCTACCACAGCTGAATACCGGAATGTGAAAAG
TCTTGTTTCACAGTTATCTTTATTACCAAAAAATTATAGAGAATGTGTAA
ATGACGCTACATTTTTACTGTGTGCACTTTATTCACCAGTCTGTATTAAA
GGAAGTAAACCGTTGAAACCTTGTAGAGAGTTATGCGTTAAATGGCGAAA
GAATTGTCGAAGATTGGATATTTTTAGTAATGTCGCTCTTCCTGACAAGC
TGAGAGATTGTAATGAATTGCCAGAGTTTCATAATTCAATGTGTATACAA
CCAAGCAGTTTCATAACCAAAGAACAAGGTATGTTTCCAGGGACTATGGC
ATCAGTTGGGCACATACCCTGGTTTGAGCATATTTTTTCAAAGCAAAAGG
AAAATCTTCTAATTCGTGATATTTATGACATAAATTTATGGGAGCGCCTC
GGTTTTTGTCAATAATAGGAAATTTTAAACAACTTTTCTCTAACCTAAAT
TGGTAAAATCCCGGGATGTTTCCGTATTTAAACTCGTCATGAAAATCATG
AATCCATGTATAGAAATTTTGAGAAAAGTTTAGTTTTAGGCATTTACAAA
AGTAAAGTTGCCGCTGCAAACTGCTCTCGATGCGCTATAGACAATCACAC
CCCTTTGAACCGGTGGAACCTCCTGTCTCAATTAAAGGATTGATAAATTC
GATTATATTATCCCGGTGAAAGAAATAGCCTAAGGTCCAACCCCCTCTTT
AGAAAACTACTCTGATTCTAATCTCAACTTGAAAACACACAAATATATGA
GAATCCTCCCATAGGTCGTTGAGTTGTAAACAAAAGATAGGGATTTTCAA
TTAAGCTTGGTCGGTAAGTTTGTATTTGGCATCTCCATTTTATCCCATCG
AGTTATTGAGACCGGGTTTTTTAATCCTAATGTGTGATTAATTTATGACT
CTATTCTAATTTGCCGTCTCAAGTACGAAGTCTTTTCCTAATAGAAACAA
TAAATATCTGTTAGAATATCTTCCTTAAATGGGAAATTTAAACTCATTAG
TTTCCATGCCTCCTTCTTTCTTATTAGGTCATTGATTCAGGGATCTACAT
ATACATCAGTATCTTTCCACATACACATGTTTTGTATCATGTTAAACCTA
AAAACGCCTCTGCCTCACTCGTCTCACTGCACCAGTGGAGCTTCTTTTCA
CAGTGAAATGAAACTTTCTATCAAAATCCCAATGGTGATAGAAATTATCT
TTCTCAGCTATTTTCCCTTCTCAAATCTCAAACAATAATAGACACATAAG
GCATAGTTTATTGGATAGATCTTGCAGTGAACACGCCTTTAGTATCGAAA
TAAATATATGTTACATTATAAAAATAAAATTGGTTACACTAAGTATTACA
GTGGTCATTTGTGTAAATTTTGACATCACGCTAGCTAATAATAATAAAAA
ATACTTTTTTAGAATGCATGGTTATTGTTAATATCCTCTAAAGTAATATA
CTTGTATTGTTGAAATAATTTTACATGTTCAAATTCATCAAATGAAAATA
TGTGTATAATTACGTAGAACTTGAGAATAACTAAATTGTACTGTGACGAA
GCATGTAGCGTAAAACCCCCAGTGGCTGTTTATTCTGGAGGAAACATTAT
CCCCGACCAAGGCAGCCGTCACGCCGACCTTCGGAGGTTAAAGGTCCTCC
CACTTTATAATGTGAAATATAACGTAAATAATTCAAAACATTTTATAGTT
TGGTTTCTGGTATAAAGTTCTTTCGTCGTTTCAAATGTCCACGTTAGAGT
GTCGAATTTTTGTAATGTAACGTATTTTGCAACTGTGTAATTCGAATGTA
TGTTTCAATGATAGTTGTGTCCCGGTATCGCTCCAGTAGAACATCTTGAT
CGTCGGGTCATGGTTGCCCAGCATTGATAAACGGGTTTTCCAGGTTCAGG
AGCGTGTAAGAAAAAGAAATAGCATTAATGTTATAACAGTAAACTTAAAT
GTGAAACTTAACTTAGTTCAAGGCGTATGCAAGAGCAAGGATTGACAAGC
TGACAAGCAGCTTCTTTAAAGCATATTGCGCATGCGCAGTTTGTTCCAAT
CTGCGCAAGATGGTAGATTTTCGTACGAAAAACGCGGAGAAGCTCGATTT
CCACCTTTCTTCGATCGTTGGAAATCACACTGTTCTTAGGTAAAAAAATC
TAACTAGATGTGGATGGTTTATGAGTGCAATTTTTTCATTGAACTTTTAA
TGAGGCCCCCCCAGCGGCACCCTTAATCTTGCCATCACGCAAAAAAATTT
TCTCCATCATGCATCACGAAAATTTGTCATCACGCAAAAAATAGTGAAAA
ATAGCCCAAATCACGCATCACGCCTCAAATTTTTGCCCTATCACGCATCA
CGCCATCACGCCAAAAAAAAATCTCCAATCACGCCATCACGCAAGAAAAA
AGTCCCAATCACGCCATCACGCAAACGGCTGGGGGGGGGCTCTTAAATGG
GATGAAAAAAGATTTTCCAGTTGGGTTGAAATTGTACGGAATCCTTTCCA
CCGGGAATGAAAAATTTGAACAAATCTTTCAGTGAGAGGGGGATCCCAAC
GGGTCTGTGACACAGGGGTCTAAAAAACGGGGTTTTTTTAGCTTAAAATT
TACCAATTTTGTTTGAATCAGTTTAAGTGGGATGCATCCCGGGGGAGGCA
CTCAGGCAAACGGGTCATGCCGCTGATCAGGGCCTCTTTGTTAGGTTCTA
AAGACATCTAACAGGGTCCCTAATTTACTAATTTTCAAGATTTGTATCGA
ACAGGATCGACTTTTGGTTATTTTGAACAATTTTTAGAGTCCACCCTAAT
AAGATATTTTTCAATCTTTTGTCAATATTTTGTCATTTTTGCTACTTGTT
GTAGGAATTTTTTTTCGATTTTTCGTTCCGACAGGGTCCCAAATTTATTA
CATTCATATGACAGGGTCCAAAACTTAAATCTCTTAAATGTAATTTCATT
TGCAAGATCCAAATGTCTACCGCTGAATATCAAATGGTTATTCATTACTT
TTCAGAAGAAAAGAAATCGAATAAAGATTCTTCAAAACACAAAACGTGCG
ATTGTAAAGACTTCAAGCAACCAACGCCTAAATATCGTCATTTTCGGAAA
GCAGCCTACGGTCAGTAAATATCTTGTTCAATTCATATTAATAGTTTATT
TCGGGCAGTCGAAGAAAATTAGAGAAGTTAAGGGTTCAAATTTGAAGGGG
GTAATAGGTTTCCGAGGTTCCGAGCCAAAGTTCGAAAATTGACCCTTTAG
ACTGATATTTTGAAAGTTTAGCTCCTTTTTGACGAATTTACGACCCTTTT
CCCAATTTTTAGCCTAAATTTTGAAACTTAAATTCAAATTACAAGAGTCT
ATGGTCCTGGGAGTTTATCCTGTTTTTTTCTTAATTTTTGGATTTTGCAG
AGACTCAATGGCGAATATATAGACCTTTTTGACTCGTACATACCCGACAC
CCATTCTCTCTCTGTCCTAGGAATGGAACTTACACACGTTTTTAATAAAG
ACATCAAAGGTTTTGAAGCTTTGATGAGATGTTTTTAACTTTTTGAGTTT
TGAGCCAACAATGTTTTTAAGTTGTTTTGAGTAATTTTTTCTTATATATT
TTGTTCAAATAAAGTACGTAAAGAGGGAAATTAAGCCAAGTTCAAGTAGA
AATAAAGGTTTTCCCACCGAATGGGTAAATAGCTATGAATCGATTGCAGC
TATCATAAATGGAAAACTATACTCCAATTTTTGTCTCCGCTGAAAATAAT
CAAATATGTAACAACCTCACTGCAAAACATGTGCTTTCTTTCAATCCCCC
TGAATTCTTTGATACGTGAAAACAATTGAATTCGAATCCCCGGCAATAAA
AAACATTATCCAATCCACATCGACTTTCAGTCCGTTATTTTTACCCCCCC
CCCCCCCAAAAAAAAAAAAAAATTTCCAACCCCCACCGACTTTTTTTTCT
TTTTTTTTTCCCCCCCCCCCCCCACAAGCTGAAAAAATCTTACGGGGTCT
GTAAGAAGTAACCTGATAACAGCTGTTCATAATTTTCTTGCGTGCACGGT
AAACCTCTGAAGGCACTTCAAAATTATACATCTGAGGAAAATAGTCCTCC
CGCGGAAAATTTTACAACAAGAATCTTGTTGTGCGCCATGCGCCAGAAAG
TCAAAAATTAATACGGCGCCCTATTCATAAACACAATGACGCAACTTTGT
TGTCATCCCCAGTCCTTTTAGACGAACGCGGTCCTTACGATTTCGAGATT
GCATATTCGTCAGATTGTATGTTTTCACCCATTCCTTTAGAGCTTCAGCG
TGGTGGGCAGAAAACAACCACAATCTGATCTCAGGTTAGTGAGAAGGGGG
TGTGTATAAGGACAACAAAAAAATATGATGCAATCACCAAACTTATATTA
AAGTATTTTCTTCCTTGATAGTTATTGAAGCAACAATCAATTCAAGAGAA
ACATTAGCCAATGGGAACACTAAAATCATACTCGACGTTTTAAAAATCTA
CAAGCAAGGTAAATTTTGGCTAAAGTTCATCTACTAACTCCAAGAAGATT
TTGCAGCATACTTCACTTTGGAGACCTCAATTTTATACAAAACCAAAACA
TTATATATGAAATGTAGTATTACCGTGAATCTTATCGATTCCGTCCGTTT
TGAGGGTCATTTTTCTTGATAACAGGGTAGATATTATAGTTTCTAGGGCG
TTTGGAAGTTTTTTGTGTTTGCATTCTATGTTCGTGTCATTGCTTAAAAA
AATCATACTGCACTTATTTTCCTACAAGACATTCCTGTATCGGTGACCAG
GTGGGGATATCTAAGCCATTGGGGACCCAGATCGGGGAAAGAATTGTAAA
GTAAACTTTTACCCAGTCCCTTGCTTAGTCCCTTAGCTCGCTTTTTATGA
TATAACACCCTCGATGGTATCGAAAGAGGAAGCTGTAATTTGAAATGTTT
TTGTTTGCAGGTAAAATTTCGATCAAATTCGGTAAACTACGGATGTGGTC
ATCTTGTTTGTGTCACAAAGACATCCAATATGGCGATAAGAAGTATTTCT
TGATTGTTGACGAAAACCATCACAAAAAGAAGAAAAATTTAGAAATCAGT
AAGACAACACTCGTTCTTGATGCTACACAATATGAAAATAAAATTGACAA
ATGGTACAAGAAATGTTTGAAGCGTAAAAGTTGCTAATAATCATTGCTAT
TATGAGTGACATTTTCTGATAAATATTCTGGCAATCTGAATGGAACTAAT
AGCAGATCTGTTTAACATGTCTTTACAAGAACATCTAATGTTTGCGAACC
CTTTTGCTCTTAACTCTTTTGTGAGCTTTAAACCTAAAATTATTCTTAAA
ATGTTCTTATTTCTTAAGAAATTGGGTGTTTCAGAGTCTGAAATAACCAT
TTTAACTTGTTCTTAAGCCATCAAAGCCTTGTTCTTATAAAGTAACCTGT
ATCGACAGAACAAGTAAAATGATTCTGTTAGTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037853XLOC_037853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060164-exon-scaffold_336-1575043694:53533..53633TCONS_00060164-exon-scaffold_336-1575043694:53533..53633Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1575043694:52606..53113TCONS_00060164-exon-scaffold_336-1575043694:52606..53113Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1575043694:49774..49878TCONS_00060164-exon-scaffold_336-1575043694:49774..49878Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1575043694:48376..48462TCONS_00060164-exon-scaffold_336-1575043694:48376..48462Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1575043694:47398..47923TCONS_00060164-exon-scaffold_336-1575043694:47398..47923Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1510915933:53533..53633TCONS_00060164-exon-scaffold_336-1510915933:53533..53633Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1510915933:52606..53113TCONS_00060164-exon-scaffold_336-1510915933:52606..53113Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1510915933:49774..49878TCONS_00060164-exon-scaffold_336-1510915933:49774..49878Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1510915933:48376..48462TCONS_00060164-exon-scaffold_336-1510915933:48376..48462Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1510915933:47398..47923TCONS_00060164-exon-scaffold_336-1510915933:47398..47923Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1491911889:53533..53633TCONS_00060164-exon-scaffold_336-1491911889:53533..53633Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1491911889:52606..53113TCONS_00060164-exon-scaffold_336-1491911889:52606..53113Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1491911889:49774..49878TCONS_00060164-exon-scaffold_336-1491911889:49774..49878Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1491911889:48376..48462TCONS_00060164-exon-scaffold_336-1491911889:48376..48462Clytia hemisphaericaexon
TCONS_00060164-exon-scaffold_336-1491911889:47398..47923TCONS_00060164-exon-scaffold_336-1491911889:47398..47923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_336supercontigscaffold_336:47398..53633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.356411	0.329709	0	0	8.82018	8.92795	0	0.54754	2.80714	3.09299	4.43654	5.90439	8.03347	6.50342	19.8959	6.01244	0	0
Blast
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BLAST of TCONS_00060164 vs. Swiss-Prot (Human)
Match: SFRP3 (Secreted frizzled-related protein 3 OS=Homo sapiens GN=FRZB PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.446e-16
Identity = 62/220 (28.18%), Postives = 103/220 (46.82%), Query Frame = 3 
Query:  231 CIPVEIPQCKR--WYDQRRPPNIYTATTAEYRNVKSLVSQLSLLPKNYRECVNDATFLLCALYSPVCIKG--SKPLKPCRELCVKWRKNCRRLDIFSNVALPDKLRDCNELPEFHNSMCIQPSSFITKE-----QEEKKSNKDSSKHKTCDCKDFKQPTPKYRHFRKA-AYVIEATINSRETLANGNTKIILDVLKIYKQGKISIKFGKLRMWSS--CLC 854
            C PV IP CK   W   + P +++ +T A   N    + Q   L   +  C  D  F LCA+Y+P+C      +P+KPC+ +C + R+ C  + I    + P+ L  C ELP +   +CI P + +T +      +    N   +  + C CK  +     Y  FR    YVI A +   +T  +  T ++ +V +I K   ++I    + +++S  CLC
Sbjct:   35 CEPVRIPLCKSLPWNMTKMPNHLHHSTQA---NAILAIEQFEGLLGTH--CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPENL-ACEELPVYDRGVCISPEAIVTADGADFPMDSSNGNCRGASSERCKCKPIRATQKTY--FRNNYNYVIRAKVKEIKTKCHDVTAVV-EVKEILKSSLVNIPRDTVNLYTSSGCLC 245
The following BLAST results are available for this feature:
BLAST of TCONS_00060164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SFRP33.446e-1628.18Secreted frizzled-related protein 3 OS=Homo sapien... [more]
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