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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060160 ID=TCONS_00060160|Name=TCONS_00060160|organism=Clytia hemisphaerica|type=transcript|length=1497bp
GTGAAAATAAgcacatgctaagaacatttttagacttgaaaataaaaaag
ttaagaatattcgaaggcttccaaaataaaaaaagtgtactcaACATAAA
TACTCGAAGGGAATAGAAATCAAACAActttgtaaaattttgtttaaaag
caCCTACTGTAAATGTGCTGCTGGACGATCTCCACTAGTCCACTTGTCAC
TAGACTAgaagtctacttctgactgaacgaACTTTGCTTAAGAAGACAAG
AAGATAAACCTAATTCCACacaaaattataaagaaaaattttacatgctt
aaaattcttaaaactaaaaacaaaaacaaaaacaaaactaccTCAGCTTT
GAAAAAACACGATCCCTAGGTAAtgattttctgactgattttggATTCTA
TAATAATCTATAAAATAGTGCATTGCCTGGATATTGCGCCAGCATGGAAC
AATTGTGCGAGATATTCTGTCTgtttttcttacaaaaagaaaacaatgtG
TAACATGTGTGTAATGTGTAATATGTGTGTAATGTGTAATATGTGTGTAA
TGTGTAACATGTGTGTAATGTGTAATATGTGTGTAATGTGTAATATGTGT
GTAATGTGTAATATGTGTGTAATGTGTAATATGTGTGTAATGTGTAATAT
GTGTGTAATGTGTAATATGTGTGTAATGTGTAATATGTGTGTAATGTGTA
ATATGTGTGTAATATGTAATATGTGTGTAATGTGTTATTATGCTCAGCAA
TAAAAAGGAACCAACTCAATATAATCCCACACCATCCCTTCTTTCCAGTA
ATTATTCTCCGTATCAGAGAACCGTACTAAAACATCTTGATTATCATCTT
CCAAAATGATAGGTTCATCCACTACAAAATCAAACCAACCAGACTCTTTA
TCATGATTCTTAAATGAACAGCCAGCAGGAAAATCTTCTAAAGGTGTCCC
TTCATTAATATATGCTCGAATTTTTTCCCAATCGTTGGTATGAAAATTAA
ATGCATTTTCAAAATTGGCATCATTTTTATTGCTCCTCCAACAAGACTTG
ATATGAACCATTTCCCCACCATCTCCTGAAGGCCAGTAAANTTATTGCTC
CTCCAACAAGACTTAATATAAACCATTTCCCCACCATCTCCTGAAGGCCA
GTAAAAATCTTCTCCAAACTTCATTCTCATAACAAACTGATATTCGCCAC
GCTTAACCAGTTTAAAAGTGTGTTTCATCTCAAGCCAACAAACATTTTTA
AGCCTCAAAACATCATGTTGGGTATGTTCATCAAACTCTCTTGAAAAGTA
TTCAGGATTTGTTGAGTGAGAGAAAGAATCGACTTCTAAACAAGATACAC
GTAGTGCTCCAATTGTAGATGTTTCCATTGTTTCGTGGTGCTTTGACTCG
TTATTTGGTTTAATCAAATCTTCTATTCTGGTTGAttcaatgttttattt
tatttttcattttcttctgaGAAATGGATGCAAAATTTAGTGTCTAC Run BLAST on NCBI transcript from alignment at scaffold_336:200502..204548+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060160 ID=TCONS_00060160|Name=TCONS_00060160|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at scaffold_336:200502..204548+ (Clytia hemisphaerica)
GTGAAAATAAgcacatgctaagaacatttttagacttgaaaataaaaaag
ttaagaatattcgaaggcttccaaaataaaaaaagtgtactcaACATAAA
TACTCGAAGGGAATAGAAATCAAACAActttgtaaaattttgtttaaaag
caCCTACTGTAAATGTGCTGCTGGACGATCTCCACTAGTCCACTTGTCAC
TAGACTAgaagtctacttctgactgaacgaACTTTGCTTAAGAAGACAAG
AAGATAAACCTAATTCCACacaaaattataaagaaaaattttacatgctt
aaaattcttaaaactaaaaacaaaaacaaaaacaaaactaccTCAGCTTT
GAAAAAACACGATCCCTAGGTAAtgattttctgactgattttggATTCTA
TAATAATCTATAAAATAGTGCATTGCCTGGATATTGCGCCAGCATGGAAC
AATTGTGCGAGATATTCTGTCTgtttttcttacaaaaagaaaacaatgtG
TAACATGTGTGTAATGTGTAATATGTGTGTAATGTGTAATATGTGTGTAA
TGTGTAACATGTGTGTAATGTGTAATATGTGTGTAATGTGTAATATGTGT
GTAATGTGTAATATGTGTGTAATGTGTAATATGTGTGTAATGTGTAATAT
GTGTGTAATGTGTAATATGTGTGTAATGTGTAATATGTGTGTAATGTGTA
ATATGTGTGTAATATGTAATATGTGTGTAATGTGTTATTATGCTCAGCAA
TAAAAAGGAACCAACTCAATATAATCCCACACCATCCCTTCTTTCCAGTA
ATTATTCTCCGTATCAGAGAACCGTACTAAAACATCTTGATTATCATCTT
CCAAAATGATAGGTTCATCCACTACAAAATCAAACCAACCAGACTCTTTA
TCATGATTCTTAAATGAACAGCCAGCAGGAAAATCTTCTAAAGGTGTCCC
TTCATTAATATATGCTCGAATTTTTTCCCAATCGTTGGTATGAAAATTAA
ATGCATTTTCAAAATTGGCATCATTTTTATTGCTCCTCCAACAAGACTTG
ATATGAACCATTTCCCCACCATCTCCTGAAGGCCAGTAAANTTATTGCTC
CTCCAACAAGACTTAATATAAACCATTTCCCCACCATCTCCTGAAGGCCA
GTAAAAATCTTCTCCAAATTTCATCCTCATGACAAACTGATATTCGCCAC
GCTTAACCAATTTAAAAGTGTGTTTCATCTCAAGCCAACAGACACTTTTA
AGCCTCAAAACATCATGTTGGGTATGTTCATCGAACTCTCTTGAAAAGTA
TTCAGGATTTGTTGAGTGAGGGAAAGAATCGACTCCCAAACAAGATACAC
GTACTCGATCATTGTATAGCTTTGCAACTTTGTAACCAAGTAGAGGTGAT
TGAAACTTTGTCAATTTGTCTTTTATGGACACTTCCTTTGGTGACAAGCA
TGTAGTCGATTCAAAAAACTGGCCACCATTCAACACTCTTGTttcacaaa
atttgtaaatgctGTCTCTCATTTCTTGGCAGGTGAGAGCAAAAGACAGG
AGGTCATTGGGCTTTAAGAAACCAAACAAGTAGAACAAATCGTCAACATT
TAGTGCTCCAATTGTAGATCCTTCCATCTGAACTTCAAACCTTGATTTAA
GATTTGGTTtcccttttttctattgttttataccATTTATATATACTTTA
AAattctaagaaaaaagaaagaaattaattGACACGTTTGACATGTTTTG
TTAAGTTTTCAcgacacgtttttttataagaacaaactatataagaacat
aaggcttcgatggcaaaaatcttaagaacaagttaagaacatctgaaggc
ttcaaaaattttagatgttcttataaaaaaatgtgtattatgGAAGCAAA
TTCGAAGTAGCTACACCTACAACCAACAAACAttcgaactttttttttct
tcaaaatggcAGAAATAACGTAACTCTATACTTTACTCTGTAGCTAAAAC
CTCTATACACGGAAGTAACGAAATTTATACACAGTTTTTAGTACTTGCTA
TGAAGTGAAGTACGAAGGACCGAATTTCTAGTTTGCCTCTTATTTTCATT
AGCATACGCATACActctttaaaagaacaaatcatATAAAGGACATACGG
CTTTGAAGTTCAGAATAAGTTATGAACAATTTACGGGTTCACTGACTCTA
AgacacctgatttcttaggaaattgtacAAAAGTATTgtgaaaatttgtg
aaaataagaacaacttaagagcatttaggcttaaaattcaaaaagttaag
agcattcaAACAtccttaaaaattttgaatgttcttataaaaaatgtata
cTTTTTCCTCAATGGTATGACAGCTAGAAAATGttgtaaaatgttgatat
aaaaatattgtaataTATTACTAttataacagtacaaaaaagtGAAATCT
AAATTACGTGCAAAATTGTGaaataaggcgaaaataaaaaaaatgtagtg
tttccggaatgcgggtgaaggaaaaaagttttgatagcttgaacggtcaa
cttgattttctttatgatgaaccaaaatcttttttctgaCCCGACCGCAG
ACTATGGGCTCATCTatatgatgaaccatatagatgaGCCCATAGTCTGC
GGTCAGgtcagaaaaaagatttttttcattcgGCCGGTTTCCAGAATTTT
ATTTCTTCTCAAACAATGAAAGCCCTCGCTGGCCCTCGCCCTCAGCTGTT
TGCGTGAATAgacaaaattgaattgaaaaaagcttttgacgAAAGTGCAT
CTGACCAATGGCTTTATAAATTTAAAAtcgacaaaaaatattttataaat
tttcagaaTGAATTATATTGAAATCTAATATTGAAATAATGAAATTGAAG
TTAATTAGAAATATATTAAAATTCAATATCAATTagatttatcaaaacaa
aatgttcaATCTACAAGAGGGAGCAATTCAATATAATCCCATATTAAACC
AGATTTCCACCATGGATTCTCTCTATCAGCAAACCAAACAAGTACTTCAT
TTTCATTATCATCCAGGGAAATCAATTCATTCACTACAAAATCAAACCAA
CCAGACTCTTTATCATGATTCTTAAATGAACAGCCAgcagaaaaattttc
taaaggtGTCCCTTCATTAATATATGCTCGAATTTTTTCCCAATCGTTGG
TATGAAAATTAAATGCATTTTCAAAATTGGCATCATTTTTATTGCTCCTC
CAACAAGACTTGATATGAACCATTTCCCCACCATCTCCTGAAGGCCAGTA
AAAATCTTCTCCAAATTTCATNTTCAAGATACAAATTAgattcatcaaaa
caaaatgttcaATCTACAAGAGGACGCAATTCAATATAATCCCATACTAA
ACCAGATTTCCACCATGGATTCTCTCTATCAGCAAACCAAACAAGTActt
cattttcattattatCCAGGGAAATCAATTCATTCACTACAAAATCAAAC
CAACCAGACTCTTTATCGTGATTCTTAAATGAACAGCCATCAGGAAAATC
TTCTAAAGGTGTCCCTTCATTGATATATGCTCGAATTTTTTCCCAATCCT
TGGTATGAAAATTAAatgcattttcaaaatttgcatCATTTTTATTGCTC
CTCCAACAAGACTTAATACGAACCATTTCCCCAGCACCTCCTGAAGGCCA
GTAAAAATCTTCTCCAAACTTCATTCTCATAACAAACTGATATTCGCCAC
GCTTAACCAGTTTAAAAGTGTGTTTCATCTCAAGCCAACAAACATTTTTA
AGCCTCAAAACATCATGTTGGGTATGTTCATCAAACTCTCTTGAAAAGTA
TTCAGGATTTGTTGAGTGAGAGAAAGAATCGACTTCTAAACAAGATACAC
GTAGTGCTCCAATTGTAGATGTTTCCATTGTTTCGTGGTGCTTTGACTCG
TTATTTGGTTTAATCAAATCTTCTATTCTGGTTGAttcaatgttttattt
tatttttcattttcttctgaGAAATGGATGCAAAATTTAGTGTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060160-exon-scaffold_336-1491911889:200502..201647 | TCONS_00060160-exon-scaffold_336-1491911889:200502..201647 | Clytia hemisphaerica | exon |
| TCONS_00060160-exon-scaffold_336-1510915933:200502..201647 | TCONS_00060160-exon-scaffold_336-1510915933:200502..201647 | Clytia hemisphaerica | exon |
| TCONS_00060160-exon-scaffold_336-1575043694:200502..201647 | TCONS_00060160-exon-scaffold_336-1575043694:200502..201647 | Clytia hemisphaerica | exon |
| TCONS_00060160-exon-scaffold_336-1491911889:204198..204548 | TCONS_00060160-exon-scaffold_336-1491911889:204198..204548 | Clytia hemisphaerica | exon |
| TCONS_00060160-exon-scaffold_336-1510915933:204198..204548 | TCONS_00060160-exon-scaffold_336-1510915933:204198..204548 | Clytia hemisphaerica | exon |
| TCONS_00060160-exon-scaffold_336-1575043694:204198..204548 | TCONS_00060160-exon-scaffold_336-1575043694:204198..204548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_336 | supercontig | scaffold_336:200502..204548 + |
Blast
The following BLAST results are available for this feature:
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