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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060151 ID=TCONS_00060151|Name=TCONS_00060151|organism=Clytia hemisphaerica|type=transcript|length=717bp
AAAAGACAGTGAGAAAAAATGAAGACAGAAGCGGATATAAGCATCCATCA
TAAACCATTAAAAACACATAAAGAATTAGTGGAAGAATTTTACTCTGGCA
TAACTCTTCATGGATTTCGATTTCTCTTTGAAGGCAATAAGGAGAAGGAC
CACAACAGCAACAACACAGGCCGTTTCATTCAGGATTTGATTCAAAAAGG
GATTGATACGAAAACAAAGTTTATCAACTCTTACGATCTTCCGtttgaag
aaattttccaaTCAGACGTGTTGGAACATTTAGCACCAGGAGGAAGCTGT
AACTTTTATGGTCAAAAATGTGACACCTCTTGGTTCACAGCTCGTTACAT
TCAAGAAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGC
TGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTA
GTATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGC
TGTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTA
TTAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatC
ACCGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGG
TAaaactacactttttttttataagaaccagtaaatttttgctgaggctc
ggctgttcttatttttt Run BLAST on NCBI protein sequence of TCONS_00060151-protein >TCONS_00060151-protein ID=TCONS_00060151-protein|Name=TCONS_00060151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MKTEADISIHHKPLKTHKELVEEFYSGITLHGFRFLFEGNKEKDHNSNNT
GRFIQDLIQKGIDTKTKFINSYDLPFEEIFQSDVLEHLAPGGSCNFYGQK
CDTSWFTARYIQEGSCYQFNGLESSLSLSLKAPKRIGYFDGFNLVLDFGK
AMIANPSYSNAVITMFESFGTRDDHIPINGVIQLSTGTKLFAKITEKENK
MLPSPYNTHCGKTTLFFYKNQ Run BLAST on NCBI transcript from alignment at scaffold_335:6352..10989+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060151 ID=TCONS_00060151|Name=TCONS_00060151|organism=Clytia hemisphaerica|type=transcript|length=4638bp|location=Sequence derived from alignment at scaffold_335:6352..10989+ (Clytia hemisphaerica)
AAAAGACAGTGAGAAAAAATGAAGACAGAAGCGGATATAAGCATCCATCA
TAAACCATTAAAAACACATAAAGAATTAGTGGAAGAATTTTACTCTGGCA
TAACTCTTCATGGATTTCGATTTCTCTTTGAAGGTACAAACTATCGCCGC
GTCACCTGGTTTCTAATCTGTTCAGCAGTATTTGCTTTCTCAATTTACCT
ATTCGAAAGTCTTCTAAATGACTACCTTGCTCATAAAGTTAATACCAGCA
TTAGCCGTAGATACGCAACTGGAAAGTTTGACTTTCCAACTATCGTTATA
TGCCCTTCCGGTAAGGCTATATCATCAGCAAAATATGACAACTATCCAAT
TGATATTGGAATCGAtgattttagaaatttgaaaagataTCTTTCGTTAG
GCAATAAGGAGAAGGACCACAACAGCAACAACACAGGCCGTTTCATTCAG
GATTTGATTCAAAAAGGGATTGATACGAAAACAAAGTTTATCAACTCTTA
CGATCTTCCGtttgaagaaattttccaaTCAGACGTGTTGGAACATTTAG
CACCAGGAGGAAGCTGTAACTTTTATGGTCAAAAATGTGACACCTCTTGG
TTCACAGCTCGTTACATTCAAGAAggtaacaatttttttttgcggtaTGT
TAAATAGTtactaacctgataacagatgtggAGTTTTTGTAACATTTACA
TTGAATTTCAGAAAGATGCTGAACTAACTGACGATCTATGTAGAGGTGAA
AATACACAATCTGTTCTCAAGTTAGTTAGCCCTGGAAAAGTTGGTAGTGT
TAAATTTGTGTGAATTCTCTTCTGACTTAAAGATggataaaccagctgcg
ctggaaagtcagccaAGAAAGCTTAGAAATGATTAAGACGAAGTATAAAT
AAAAATCTGAGCTCACCTTACAATATTTGCTTGGAACGTTTCAGACGAAA
AATGATTTGCACACAGTGGAATCCGTCCGAATCAGAAGTTAGAAGGCAAA
TTTATCTCACCTTAGGAAATTAGAACGAAATCATTTTATCATCCTTTGGC
CTTTTGACAGCTTTCACATATACTTCGGTTGTATACGGAGGCCCATTAGT
GCCATTTAGATTATCCTTTAGTTTTTTAAcgacgaaactaaaaaaaatga
cGACGAAACTAAAAATAAATTGTTGCTTCGTTTCGTCGTCGAACAAATTT
ACaacgaaactaaaaaattgacgacgaaactgaaaataaattgaaaatgg
tggccctgatGGTTTCAATATGCAAATATCATTGATTCTGGCGGATTCTG
AAGATGGATTTGATGGTTCTTGTGAATGAGATGCTGGTAATGACAAACCA
GAATAATGATTTGACGGTGGAGATTGTTGGAATCACCAGTGTCATTGGAA
TCATTTGAactaatcaatgatgaaatgaatGGTGCAAATGATGAAATCAG
TGGTGCAAATTATGGAATCAATAgtgcaaatgatggaatcaatggtgcaa
atgatggaatcaatggtgcaaatgatggaatcaatggtgcaaatgGtgga
atcaatggtgcaaatgATGAAAACAATAGTGCAAATTATGGAATCAATAg
tgcaaatgatggaatcaatggtgcaaatgatggaaccaatggtgcaaatg
atggaatcaatggtgcaaatgatggaatcaatggtgcaaatgatggaatc
aatggtgcaaatgatggaatcaatggttgcaaatgatggaatcaatggtg
caaatgATGGAATCCATTGTGCGGGTGATAGAACCAACCATTGATTTTAT
CATTTGCACTattcatttcatcattgattatttcCAATGATTCCAATGAC
ACTGGTGATTCCAACAATCTCCACCGTCAAATCATTATTCTGGTTCATCA
TTGCCAGCATCTCATTCATAAGAACCATCTTCACCagcattgcattcacc
agaactatCAAATCCATCTTTAGAATCCACCAGAATCAACGATATTTGCA
TTTTGAAACCATtagggccaccattttcaatttttttttagtttcgttgT
CATTTTTTNAACCAGAACTATCAAATCCATCTTCAGAATCCACCAGAATC
AACGATATTTGCATTTTGAAACCATtagggccaccattttcaattttttt
ttagtttcgttgtcatttttttcaacgACGAAACGAAataaaacaattta
ttttcagtttcatcGTCAACTTTGTAGTTTCGttgtcaattttttcaacg
acGAAACGAAAtgataatttattttcagtttcgtCGTCAATTTCTCAGTT
TCGTCGtcacactgggcgaaataagagattNTTTTTTCAACGACGAAACG
AAAtgataatttattttcagtttcgtCGTCAATTTCTCAGTTTCGTCGtc
acactgggcgaaataagagatttccaatcctggaaatatcttgaaaatat
gatatttcaatatacttttgtaaatatggaaatatgacttttctatattt
ccaaagttgtggaaatgtcatatttcatgatatttccaaatctaaaatat
cacattttcaaaatatttccaacttttggtaatattttgataatatgatg
tttcaatgaatttcagatttggaaatatcatgaaatatgatatttccaca
actttggaaatataaaaaagtcatatttccatatttacaaaagtatatgg
aaatatcatattttcaagatatttccaggattggaaatctcttatttcgc
ccagtgcaattttttaagttcgtcgtcaatttttttagtttcgtcgttaa
aaaattaaaggAAAATCTAAATGGCACTAATGGGCTTCCGTAGTTGTAAG
TTAACCGGTTTGTGCTTCCCGACGGATCCTTACAGCAGGACTAAAACGga
ggaaaaaaggaaatttttttgaattcgaATACTTTTATTGAGActtattt
gaccaaatttcgatctttctggggaaaaaaagttaaacattttcctattt
ttcctggGATTGAAATCTAAGTTTCTGATTTTCCTACCCTTTCAGGTACT
GCAACGTTCCAAAAAAGCATCAAGGGGCAGCACATCCGTACTATCCGTGC
ACTTGCCTAAGTAGCCcgtaaattttatgaaaataaatctTATCGGAGAT
TTTtttgcattgtgggattgttttgggggtataatataacaatagaaatc
tcttaagaattcctcgagggaaatctattgtaatacccccgaaacaatcc
cacaatgcatcgctgttttagaaaaattaaaaactccgataaggtctatt
gccaGAGCTCTGAGTGTTCCAAATACAGGTTTTTCTTATTAATTTTTTCG
TTCTTTAATTTTTAGGTTCTTGTTACCAATTCAATGGATTGGAATCGTCA
TTATCGCTGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTT
TAATTTAGTATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACT
CTAATGCTGTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCAC
ATACCTATTAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgc
aaagatCACCGAAAAAGAGGTATTGAATCTTAATTTGGGGCCTAAAACCC
CCATTTGGTATTCTCCCCCACCTACTCTTTTTCCGGGGCTCCCCccattg
gaaaaaatatttttgagaccCAACATTTAATCATCTATTTGAAATGTTAT
ATCTAACTTCTGCAATTTCTACCCCCACTTCCCATAAAATATCCTGAGAT
CCCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNttttaaaaatataaatttcttccATTCTGTTTAAATAGAGGAG
TAAAAAAACACAGTGTTCTCCCTTAAAGTTTTGTTTAGAAGCTTTGACTA
CTAACCATGAATTATGCAGTTTGTCAGATTTCTGTGAAAATAACCATTTG
AAATTACTAGacataatttaaaaatatctaaaaaatatgattctatccca
gctggcacacaacattgtttcaacgttcatctaacgttatatggacgttg
taaacattagatggacgttgaaacaacgttgtgtgccagctgggattacG
TACAGACAAAGCTTATACGTCACATTTTGGTCTCTAACAGTGGATCTTAA
TTATGCAATTCCGtcgaaatagaccttttcataaattatatcacgaacat
cacttgcctcgttttgaaattattgccatggtgattaacttccAGCGTAT
TTTATTACAattactttctattcataaaaaagatcatttaatgtctcaag
ggatatgatcaccatggaaattATCTGGATACgaggtaagtgatgttcgt
gacgtaatttatgaaaatgtctaaATTCTCTNTGGGATCAAAACTTGGAC
GAACAGTAATTTCGATGTTCTTTACTCTTTCAGAATAAAATGTTACCGAG
TCCCTATAATACCCATTGTGGTAaaactacactttttttttataagaacc
agtaaatttttgctgaggctcggctgttcttatttttt Coding sequence (CDS) from alignment at scaffold_335:6352..10989+ >TCONS_00060151 ID=TCONS_00060151|Name=TCONS_00060151|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_335:6352..10989+ (Clytia hemisphaerica)
ATGAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACA
TAAAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTC
GATTTCTCTTTGAAGGCAATAAGGAGAAGGACCACAACAGCAACAACACA
GGCCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAAA
GTTTATCAACTCTTACGATCTTCCGtttgaagaaattttccaaTCAGACG
TGTTGGAACATTTAGCACCAGGAGGAAGCTGTAACTTTTATGGTCAAAAA
TGTGACACCTCTTGGTTCACAGCTCGTTACATTCAAGAAgGTTCTTGTTA
CCAATTCAATGGATTGGAATCGTCATTATCGCTGTCTTTAAAAGCACCGA
AAAGAATTGGTTACTTTGACGGTTTTAATTTAGTATTGGACTTTGGAAAA
GCCATGATAGCAAACCCTTCCTACTCTAATGCTGTTATTACCATGTTTGA
GAGTTTCGGGACACGTGATGATCACATACCTATTAATGGAGTTATCCAGC
TTTCCACTGGAacaaaactttttgcaaagatCACCGAAAAAGAGAATAAA
ATGTTACCGAGTCCCTATAATACCCATTGTGGTAaaactacacttttttt
ttataagaaccagtaaATGAAGACAGAAGCGGATATAAGCATCCATCATA
AACCATTAAAAACACATAAAGAATTAGTGGAAGAATTTTACTCTGGCATA
ACTCTTCATGGATTTCGATTTCTCTTTGAAGGCAATAAGGAGAAGGACCA
CAACAGCAACAACACAGGCCGTTTCATTCAGGATTTGATTCAAAAAGGGA
TTGATACGAAAACAAAGTTTATCAACTCTTACGATCTTCCGtttgaagaa
attttccaaTCAGACGTGTTGGAACATTTAGCACCAGGAGGAAGCTGTAA
CTTTTATGGTCAAAAATGTGACACCTCTTGGTTCACAGCTCGTTACATTC
AAGAAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGCTG
TCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTAGT
ATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGCTG
TTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTATT
AATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatCAC
CGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGTA
aaactacactttttttttataagaaccagtaaATGAAGACAGAAGCGGAT
ATAAGCATCCATCATAAACCATTAAAAACACATAAAGAATTAGTGGAAGA
ATTTTACTCTGGCATAACTCTTCATGGATTTCGATTTCTCTTTGAAGGCA
ATAAGGAGAAGGACCACAACAGCAACAACACAGGCCGTTTCATTCAGGAT
TTGATTCAAAAAGGGATTGATACGAAAACAAAGTTTATCAACTCTTACGA
TCTTCCGtttgaagaaattttccaaTCAGACGTGTTGGAACATTTAGCAC
CAGGAGGAAGCTGTAACTTTTATGGTCAAAAATGTGACACCTCTTGGTTC
ACAGCTCGTTACATTCAAGAAgGTTCTTGTTACCAATTCAATGGATTGGA
ATCGTCATTATCGCTGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTG
ACGGTTTTAATTTAGTATTGGACTTTGGAAAAGCCATGATAGCAAACCCT
TCCTACTCTAATGCTGTTATTACCATGTTTGAGAGTTTCGGGACACGTGA
TGATCACATACCTATTAATGGAGTTATCCAGCTTTCCACTGGAacaaaac
tttttgcaaagatCACCGAAAAAGAGAATAAAATGTTACCGAGTCCCTAT
AATACCCATTGTGGTAaaactacactttttttttataagaaccagtaaAT
GAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACATA
AAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTCGA
TTTCTCTTTGAAGGCAATAAGGAGAAGGACCACAACAGCAACAACACAGG
CCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAAAGT
TTATCAACTCTTACGATCTTCCGtttgaagaaattttccaaTCAGACGTG
TTGGAACATTTAGCACCAGGAGGAAGCTGTAACTTTTATGGTCAAAAATG
TGACACCTCTTGGTTCACAGCTCGTTACATTCAAGAAgGTTCTTGTTACC
AATTCAATGGATTGGAATCGTCATTATCGCTGTCTTTAAAAGCACCGAAA
AGAATTGGTTACTTTGACGGTTTTAATTTAGTATTGGACTTTGGAAAAGC
CATGATAGCAAACCCTTCCTACTCTAATGCTGTTATTACCATGTTTGAGA
GTTTCGGGACACGTGATGATCACATACCTATTAATGGAGTTATCCAGCTT
TCCACTGGAacaaaactttttgcaaagatCACCGAAAAAGAGAATAAAAT
GTTACCGAGTCCCTATAATACCCATTGTGGTAaaactacacttttttttt
ataagaaccagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060151-exon-scaffold_335-1491911889:6352..6484 | TCONS_00060151-exon-scaffold_335-1491911889:6352..6484 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1510915933:6352..6484 | TCONS_00060151-exon-scaffold_335-1510915933:6352..6484 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1575043694:6352..6484 | TCONS_00060151-exon-scaffold_335-1575043694:6352..6484 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1491911889:6752..6976 | TCONS_00060151-exon-scaffold_335-1491911889:6752..6976 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1510915933:6752..6976 | TCONS_00060151-exon-scaffold_335-1510915933:6752..6976 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1575043694:6752..6976 | TCONS_00060151-exon-scaffold_335-1575043694:6752..6976 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1491911889:9717..9970 | TCONS_00060151-exon-scaffold_335-1491911889:9717..9970 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1510915933:9717..9970 | TCONS_00060151-exon-scaffold_335-1510915933:9717..9970 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1575043694:9717..9970 | TCONS_00060151-exon-scaffold_335-1575043694:9717..9970 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1491911889:10885..10989 | TCONS_00060151-exon-scaffold_335-1491911889:10885..10989 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1510915933:10885..10989 | TCONS_00060151-exon-scaffold_335-1510915933:10885..10989 | Clytia hemisphaerica | exon |
| TCONS_00060151-exon-scaffold_335-1575043694:10885..10989 | TCONS_00060151-exon-scaffold_335-1575043694:10885..10989 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_335 | supercontig | scaffold_335:6352..10989 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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