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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060150 ID=TCONS_00060150|Name=TCONS_00060150|organism=Clytia hemisphaerica|type=transcript|length=1050bp
atcaaaaaaaggttcccACCTAGATATCCAGGCTACAATAAAGAGctgtt
tgaattttttagaaCCAAAAGACAGTGAGAAAAAATGAAGACAGAAGCGG
ATATAAGCATCCATCATAAACCATTAAAAACACATAAAGAATTAGTGGAA
GAATTTTACTCTGGCATAACTCTTCATGGATTTCGATTTCTCTTTGAAGG
TACAAACTATCGCCGCGTCACCTGGTTTCTAATCTGTTCAGCAGTATTTG
CTTTCTCAATTTACCTATTCGAAAGTCTTCTAAATGACTACCTTGCTCAT
AAAGTTAATACCAGCATTAGCCGTAGATACGCAACTGGAAAGTTTGACTT
TCCAACTATCGTTATATGCCCTTCCGGTAAGGCTATATCATCAGCAAAAT
ATGACAACTATCCAATTGATATTGGAATCGAtgattttagaaatttgaaa
agataTCTTTCGTTAGGCAATAAGGAGAAGGACCACAACAGCAACAACAC
AGGCCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAA
AGTTTATCAACTCTTACGATCTTCCGtttgaagaaattttccaaTCAGAC
GTGTTGGAACATTTAGCACCAGGAGGAAGCTGTAACTTTTATGGTCAAAA
ATGTGACACCTCTTGGTTCACAGCTCGTTACATTCAAGAAgGTTCTTGTT
ACCAATTCAATGGATTGGAATCGTCATTATCGCTGTCTTTAAAAGCACCG
AAAAGAATTGGTTACTTTGACGGTTTTAATTTAGTATTGGACTTTGGAAA
AGCCATGATAGCAAACCCTTCCTACTCTAATGCTGTTATTACCATGTTTG
AGAGTTTCGGGACACGTGATGATCACATACCTATTAATGGAGTTATCCAG
CTTTCCACTGGAacaaaactttttgcaaagatCACCGAAAAAGAGAATAA
AATGTTACCGAGTCCCTATAATACCCATTGTGGTAaaactacactttttt
tttataagaaccagtaaatttttgctgaggctcggctgttcttatttttt Run BLAST on NCBI transcript from alignment at scaffold_335:6286..10989+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060150 ID=TCONS_00060150|Name=TCONS_00060150|organism=Clytia hemisphaerica|type=transcript|length=4704bp|location=Sequence derived from alignment at scaffold_335:6286..10989+ (Clytia hemisphaerica)
atcaaaaaaaggttcccACCTAGATATCCAGGCTACAATAAAGAGctgtt
tgaattttttagaaCCAAAAGACAGTGAGAAAAAATGAAGACAGAAGCGG
ATATAAGCATCCATCATAAACCATTAAAAACACATAAAGAATTAGTGGAA
GAATTTTACTCTGGCATAACTCTTCATGGATTTCGATTTCTCTTTGAAGG
TACAAACTATCGCCGCGTCACCTGGTTTCTAATCTGTTCAGCAGTATTTG
CTTTCTCAATTTACCTATTCGAAAGTCTTCTAAATGACTACCTTGCTCAT
AAAGTTAATACCAGCATTAGCCGTAGATACGCAACTGGAAAGTTTGACTT
TCCAACTATCGTTATATGCCCTTCCGGTAAGGCTATATCATCAGCAAAAT
ATGACAACTATCCAATTGATATTGGAATCGAtgattttagaaatttgaaa
agataTCTTTCGTTAGGCAATAAGGAGAAGGACCACAACAGCAACAACAC
AGGCCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAA
AGTTTATCAACTCTTACGATCTTCCGtttgaagaaattttccaaTCAGAC
GTGTTGGAACATTTAGCACCAGGAGGAAGCTGTAACTTTTATGGTCAAAA
ATGTGACACCTCTTGGTTCACAGCTCGTTACATTCAAGAAggtaacaatt
tttttttgcggtaTGTTAAATAGTtactaacctgataacagatgtggAGT
TTTTGTAACATTTACATTGAATTTCAGAAAGATGCTGAACTAACTGACGA
TCTATGTAGAGGTGAAAATACACAATCTGTTCTCAAGTTAGTTAGCCCTG
GAAAAGTTGGTAGTGTTAAATTTGTGTGAATTCTCTTCTGACTTAAAGAT
ggataaaccagctgcgctggaaagtcagccaAGAAAGCTTAGAAATGATT
AAGACGAAGTATAAATAAAAATCTGAGCTCACCTTACAATATTTGCTTGG
AACGTTTCAGACGAAAAATGATTTGCACACAGTGGAATCCGTCCGAATCA
GAAGTTAGAAGGCAAATTTATCTCACCTTAGGAAATTAGAACGAAATCAT
TTTATCATCCTTTGGCCTTTTGACAGCTTTCACATATACTTCGGTTGTAT
ACGGAGGCCCATTAGTGCCATTTAGATTATCCTTTAGTTTTTTAAcgacg
aaactaaaaaaaatgacGACGAAACTAAAAATAAATTGTTGCTTCGTTTC
GTCGTCGAACAAATTTACaacgaaactaaaaaattgacgacgaaactgaa
aataaattgaaaatggtggccctgatGGTTTCAATATGCAAATATCATTG
ATTCTGGCGGATTCTGAAGATGGATTTGATGGTTCTTGTGAATGAGATGC
TGGTAATGACAAACCAGAATAATGATTTGACGGTGGAGATTGTTGGAATC
ACCAGTGTCATTGGAATCATTTGAactaatcaatgatgaaatgaatGGTG
CAAATGATGAAATCAGTGGTGCAAATTATGGAATCAATAgtgcaaatgat
ggaatcaatggtgcaaatgatggaatcaatggtgcaaatgatggaatcaa
tggtgcaaatgGtggaatcaatggtgcaaatgATGAAAACAATAGTGCAA
ATTATGGAATCAATAgtgcaaatgatggaatcaatggtgcaaatgatgga
accaatggtgcaaatgatggaatcaatggtgcaaatgatggaatcaatgg
tgcaaatgatggaatcaatggtgcaaatgatggaatcaatggttgcaaat
gatggaatcaatggtgcaaatgATGGAATCCATTGTGCGGGTGATAGAAC
CAACCATTGATTTTATCATTTGCACTattcatttcatcattgattatttc
CAATGATTCCAATGACACTGGTGATTCCAACAATCTCCACCGTCAAATCA
TTATTCTGGTTCATCATTGCCAGCATCTCATTCATAAGAACCATCTTCAC
CagcattgcattcaccagaactatCAAATCCATCTTTAGAATCCACCAGA
ATCAACGATATTTGCATTTTGAAACCATtagggccaccattttcaatttt
tttttagtttcgttgTCATTTTTTNAACCAGAACTATCAAATCCATCTTC
AGAATCCACCAGAATCAACGATATTTGCATTTTGAAACCATtagggccac
cattttcaatttttttttagtttcgttgtcatttttttcaacgACGAAAC
GAAataaaacaatttattttcagtttcatcGTCAACTTTGTAGTTTCGtt
gtcaattttttcaacgacGAAACGAAAtgataatttattttcagtttcgt
CGTCAATTTCTCAGTTTCGTCGtcacactgggcgaaataagagattNTTT
TTTCAACGACGAAACGAAAtgataatttattttcagtttcgtCGTCAATT
TCTCAGTTTCGTCGtcacactgggcgaaataagagatttccaatcctgga
aatatcttgaaaatatgatatttcaatatacttttgtaaatatggaaata
tgacttttctatatttccaaagttgtggaaatgtcatatttcatgatatt
tccaaatctaaaatatcacattttcaaaatatttccaacttttggtaata
ttttgataatatgatgtttcaatgaatttcagatttggaaatatcatgaa
atatgatatttccacaactttggaaatataaaaaagtcatatttccatat
ttacaaaagtatatggaaatatcatattttcaagatatttccaggattgg
aaatctcttatttcgcccagtgcaattttttaagttcgtcgtcaattttt
ttagtttcgtcgttaaaaaattaaaggAAAATCTAAATGGCACTAATGGG
CTTCCGTAGTTGTAAGTTAACCGGTTTGTGCTTCCCGACGGATCCTTACA
GCAGGACTAAAACGgaggaaaaaaggaaatttttttgaattcgaATACTT
TTATTGAGActtatttgaccaaatttcgatctttctggggaaaaaaagtt
aaacattttcctatttttcctggGATTGAAATCTAAGTTTCTGATTTTCC
TACCCTTTCAGGTACTGCAACGTTCCAAAAAAGCATCAAGGGGCAGCACA
TCCGTACTATCCGTGCACTTGCCTAAGTAGCCcgtaaattttatgaaaat
aaatctTATCGGAGATTTTtttgcattgtgggattgttttgggggtataa
tataacaatagaaatctcttaagaattcctcgagggaaatctattgtaat
acccccgaaacaatcccacaatgcatcgctgttttagaaaaattaaaaac
tccgataaggtctattgccaGAGCTCTGAGTGTTCCAAATACAGGTTTTT
CTTATTAATTTTTTCGTTCTTTAATTTTTAGGTTCTTGTTACCAATTCAA
TGGATTGGAATCGTCATTATCGCTGTCTTTAAAAGCACCGAAAAGAATTG
GTTACTTTGACGGTTTTAATTTAGTATTGGACTTTGGAAAAGCCATGATA
GCAAACCCTTCCTACTCTAATGCTGTTATTACCATGTTTGAGAGTTTCGG
GACACGTGATGATCACATACCTATTAATGGAGTTATCCAGCTTTCCACTG
GAacaaaactttttgcaaagatCACCGAAAAAGAGGTATTGAATCTTAAT
TTGGGGCCTAAAACCCCCATTTGGTATTCTCCCCCACCTACTCTTTTTCC
GGGGCTCCCCccattggaaaaaatatttttgagaccCAACATTTAATCAT
CTATTTGAAATGTTATATCTAACTTCTGCAATTTCTACCCCCACTTCCCA
TAAAATATCCTGAGATCCCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttttaaaaatataaatttcttccATTC
TGTTTAAATAGAGGAGTAAAAAAACACAGTGTTCTCCCTTAAAGTTTTGT
TTAGAAGCTTTGACTACTAACCATGAATTATGCAGTTTGTCAGATTTCTG
TGAAAATAACCATTTGAAATTACTAGacataatttaaaaatatctaaaaa
atatgattctatcccagctggcacacaacattgtttcaacgttcatctaa
cgttatatggacgttgtaaacattagatggacgttgaaacaacgttgtgt
gccagctgggattacGTACAGACAAAGCTTATACGTCACATTTTGGTCTC
TAACAGTGGATCTTAATTATGCAATTCCGtcgaaatagaccttttcataa
attatatcacgaacatcacttgcctcgttttgaaattattgccatggtga
ttaacttccAGCGTATTTTATTACAattactttctattcataaaaaagat
catttaatgtctcaagggatatgatcaccatggaaattATCTGGATACga
ggtaagtgatgttcgtgacgtaatttatgaaaatgtctaaATTCTCTNTG
GGATCAAAACTTGGACGAACAGTAATTTCGATGTTCTTTACTCTTTCAGA
ATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGTAaaactacactt
tttttttataagaaccagtaaatttttgctgaggctcggctgttcttatt
tttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060150-exon-scaffold_335-1491911889:6286..6976 | TCONS_00060150-exon-scaffold_335-1491911889:6286..6976 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1510915933:6286..6976 | TCONS_00060150-exon-scaffold_335-1510915933:6286..6976 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1575043694:6286..6976 | TCONS_00060150-exon-scaffold_335-1575043694:6286..6976 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1491911889:9717..9970 | TCONS_00060150-exon-scaffold_335-1491911889:9717..9970 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1510915933:9717..9970 | TCONS_00060150-exon-scaffold_335-1510915933:9717..9970 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1575043694:9717..9970 | TCONS_00060150-exon-scaffold_335-1575043694:9717..9970 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1491911889:10885..10989 | TCONS_00060150-exon-scaffold_335-1491911889:10885..10989 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1510915933:10885..10989 | TCONS_00060150-exon-scaffold_335-1510915933:10885..10989 | Clytia hemisphaerica | exon |
| TCONS_00060150-exon-scaffold_335-1575043694:10885..10989 | TCONS_00060150-exon-scaffold_335-1575043694:10885..10989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_335 | supercontig | scaffold_335:6286..10989 + |
Blast
The following BLAST results are available for this feature:
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