TCONS_00060145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060145
Unique NameTCONS_00060145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060145 ID=TCONS_00060145|Name=TCONS_00060145|organism=Clytia hemisphaerica|type=transcript|length=432bp
CCCAGAACAGATATATTTTCCCAGGAGCGGGTTATGAAAATAACAGTTCA
TATTTTCCAGTGAAAAAAGGCCTCCCGAACAGTTATTTTGTATTTCCTAG
CCGTTGGCTGCTCTTGGTTTTAAAGATATTACATTCAATAGGCAAACATT
TAAATGAGAACTGCACCTCATAATAGCTGCAACTCTTTCAACTTTGTTCT
GACGCAATCGTGTGTATTCTTCACTAACTTTATCACTACAGACAAAAGCA
CTACGTCGATATTGACCAGTAAAGTACAAActatttaaatttttcactcT
GCTCATTGCAACATACATTTGACCAGCATTGAACTTTCTTTGCCTTGCAA
GGTCAAAACTAACGACTACTAAATCCAAAGTCAATCCTTGAACTTTGCGC
ACTGTACAAGCATAAGCTAGCTTAAGAGGAAA
Run BLAST on NCBI

protein sequence of TCONS_00060145-protein

>TCONS_00060145-protein ID=TCONS_00060145-protein|Name=TCONS_00060145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
FPLKLAYACTVRKVQGLTLDLVVVSFDLARQRKFNAGQMYVAMSRVKNLN
SLYFTGQYRRSAFVCSDKVSEEYTRLRQNKVERVAAIMRCSSHLNVCLLN
VISLKPRAANG
Run BLAST on NCBI

transcript from alignment at scaffold_334:320693..321124

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060145 ID=TCONS_00060145|Name=TCONS_00060145|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at scaffold_334:320693..321124 (Clytia hemisphaerica)
TTTCCTCTTAAGCTAGCTTATGCTTGTACAGTGCGCAAAGTTCAAGGATT
GACTTTGGATTTAGTAGTCGTTAGTTTTGACCTTGCAAGGCAAAGAAAGT
TCAATGCTGGTCAAATGTATGTTGCAATGAGCAgagtgaaaaatttaaat
agTTTGTACTTTACTGGTCAATATCGACGTAGTGCTTTTGTCTGTAGTGA
TAAAGTTAGTGAAGAATACACACGATTGCGTCAGAACAAAGTTGAAAGAG
TTGCAGCTATTATGAGGTGCAGTTCTCATTTAAATGTTTGCCTATTGAAT
GTAATATCTTTAAAACCAAGAGCAGCCAACGGCTAGGAAATACAAAATAA
CTGTTCGGGAGGCCTTTTTTCACTGGAAAATATGAACTGTTATTTTCATA
ACCCGCTCCTGGGAAAATATATCTGTTCTGGG

Coding sequence (CDS) from alignment at scaffold_334:320693..321124

>TCONS_00060145 ID=TCONS_00060145|Name=TCONS_00060145|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_334:320693..321124 (Clytia hemisphaerica)
TTTCCTCTTAAGCTAGCTTATGCTTGTACAGTGCGCAAAGTTCAAGGATT
GACTTTGGATTTAGTAGTCGTTAGTTTTGACCTTGCAAGGCAAAGAAAGT
TCAATGCTGGTCAAATGTATGTTGCAATGAGCAgagtgaaaaatttaaat
agTTTGTACTTTACTGGTCAATATCGACGTAGTGCTTTTGTCTGTAGTGA
TAAAGTTAGTGAAGAATACACACGATTGCGTCAGAACAAAGTTGAAAGAG
TTGCAGCTATTATGAGGTGCAGTTCTCATTTAAATGTTTGCCTATTGAAT
GTAATATCTTTAAAACCAAGAGCAGCCAACGGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037841XLOC_037841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060145-exon-scaffold_334-1491911889:320693..321124TCONS_00060145-exon-scaffold_334-1491911889:320693..321124Clytia hemisphaericaexon
TCONS_00060145-exon-scaffold_334-1510915933:320693..321124TCONS_00060145-exon-scaffold_334-1510915933:320693..321124Clytia hemisphaericaexon
TCONS_00060145-exon-scaffold_334-1575043694:320693..321124TCONS_00060145-exon-scaffold_334-1575043694:320693..321124Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060145-proteinTCONS_00060145-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:320693..321124 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40297	0	0.0809976	0	0.835715	0	0	0.22533	0.585786	1.46174	0.0552209	0	0.317973	1.86548	0.267304	1.51389	0.309914	0.614534	1.04186	1.36306	2.0429	1.75061	0	0	1.15782	0.806619	1.45954	0	1.40513	4.59375e-05
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003840DNA_helicase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0004386 helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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