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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060095 ID=TCONS_00060095|Name=TCONS_00060095|organism=Clytia hemisphaerica|type=transcript|length=584bp
TAACCCTTGCTCAGAATTAAGTCTTACGTAACCCAGAAGGCATTGCATCC
ATCCTGTTCCACGAACCTGAAATGGCCGATGAATGTATCCAGACGCTGAA
CGGGCGGTTTTATGGCGGCCGAACAATCAGCGCGGCCACGTATGACGGAG
TGACGTCATACAAAATTGAAGAGACTGAAGAGGAGCTTGAAAAACGTTTG
GACGAATGGGAAAAATTTATCGGTGGAGATGATGAcggtgatgatgatga
tgacgcAACAGTGACGTAATATTGATTGATGACATCATCGACGTACGACA
TGAATGCACTTGTATTCGTCAAAGCATTTGAGGTGAACTTTATTCCTTGG
GAAATTTCATTGATGTAAAGTCAAAAGTAGATTCGAAGACGTTGTTGTGA
GATACAGAgactttcataaaaaaattatacgaTAAACGGTTGGTCTGAAT
CCAGAATACATGACTATGGGTATGATTTATAAGACTTGGTGGAAAAATGA
CAGTGCCCACCATCACTATACATTGATATCGTTCTCTCCTCTCTGTAAGA
GTCATTGAAAGAATCCACTAATTCAAATTGTGGA Run BLAST on NCBI transcript from alignment at scaffold_334:72247..76716+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060095 ID=TCONS_00060095|Name=TCONS_00060095|organism=Clytia hemisphaerica|type=transcript|length=4470bp|location=Sequence derived from alignment at scaffold_334:72247..76716+ (Clytia hemisphaerica)
TAACCCTTGCTCAGAATTAAGTCTTAGTATGTTATTTATGAAATTGCACT
TACACAAGTTCAGCTGaatgtactttaggcgtacaaacatttactttcgc
gaatttaagaaaaaaatgtttttcgcgagcataaactttcgcgaatcgtt
ggataaaaatgagatttttcgaataaaaattaccttaaaagtgaaaatat
tcCGTAAAACCGCTAATAAAGGATAATATGCCGAAAATTTGATATCTATT
ACGATTTTGAGGTTTTATAGATTAccattttttttgagaatttttgcgag
cataaactttcgcgaattattctgttaagaattttcaaagacatttactt
ttgctaaaaaggccaaaatccgcgaaaaacgcgaaagttggttttgcacc
aaaaatatacattttgaagaattttacgTCGCTTTGGTTTCGCGAGCGAT
AATCAATCTGATTTATTTCCGTTTTCCCTTGTCTGTTAAACACAATCGTG
TCTCTACTGGCAAAATGTGTGTAAGTCTGTAAAAATTCTGGGTTCAAGTG
TAAAAGTTGAAGAATAACAATTAGCCCTTCTTCCTAAGAATTCTAACAAT
TACAACACTTTTTGTCAACAAGATTTAACATCGAGTTACATTTCTTTTAT
TGCAGCGTAACCCAGAAGGCATTGCATCCATCCTGTTCCACGAACCTGAA
ATGGCCGATGAATGTATCCAGGTACGCtcactacacattttttttaagcA
ACTCTAATTTTTCGCGTTAGCCGTCGGGCTgcttgcttagcattctagct
cattttttaaaagaatttgctTTGACCCCTGATACTGTCGTGTGCCCGGA
CAACCTTAAAtgaaatatgatctcttttagatgtttttgctattttttcg
ctgttttgacgccatcttaaggttaaatttttaagcgaccgacaaattaa
attcccgccaaatttagttttttcgtccatccgccaaattaaattctctc
tgaaaaaacttttttggccatccgccaaattaaattcccgccaaaatttc
ttcctttaaggtagcaATAATAAAGAAAACCCAACTTTATGTCAGCGATC
AAAAGAGCCTATGGTGTGTAATGCAAAAATAACATGAGACAGTGTTTAGG
TTTCTATATGCGCATCTTCAATGACAAGAACagtaatacacgcttttttt
ataagaatagtgtactttggatgaaggtcaagtattcttaagaaagtgcg
aaaattgagggtgaaatattcttaacgtattcttacttttttagagttga
cttttttacaaacatgaaaaATGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNcccccctgttgaggaggtccaacctttt
gtgacctacccccttggaattccaggcaattttaggatcatacccctctg
gaattccgaatttttacaaatttcaatcattacccccttggaattcggct
tatttttgacggattttcgtctacccttatggaattccactgcatttcaa
accttacccccttggaacggaaatggacctcctcaacagggggtgcacgt
ttttattctggaaaagcccaatgatcaatttgaaagttttggacTTAAGT
GAATATTTGGGTTAgaattacatttcttcctcgaagcttcaatttatctc
taacaaaggaagcagtttttttctgttaaccaaatacaaaatgactgttt
tcttatcaaattctgtgaaattcaccctagagggtattcttagggtattc
ttacgacttggccaattttcactctgatattcttatagaagatattctta
taaaaaaagcgtgtatctctACATACCTATCCttgaaataagataaaatc
taGTATAAGGAACTAGAAGTGAAGAActaaatagataaatattctGTAAT
CCTTGtaaggggccatccatatagtacgtacgcagtgaaggggggagagg
gggtttagcaaaagcgtacatctgttgtttaaatgacatcatttctattg
ttctctgcgtacaaggggggagggggtatcaaatttttggaaaatctttg
tgtacgtactatatggacggcccctaatcctatacatgttttttttataa
gcatattttttttgggaaacaagctcagttatgcttagagatattttaga
ctcaggctcgaagtatgtttatcatatgcttatttttccgaaaaattcga
GTCTCCAATTTCAAAATCTGTCATTGCTATACATGAGGATAGGGAAATAA
GTAATGACACAAAGATTTTTCAGGAAAGTGTGAACGATTGCCGCGTTTAC
GCTTACGTTTTctattagaaaaaaattcacttttcaaaagcaagctcagt
aatatgcttgtaatatgcttatttttttagacaaattaAGGTCttggtat
gcttataaacgttatgcttataaaaaacgtgtagtatgaTTTTGAGCACT
CTTATTTATAGTGCTCAACTTAATTgtcatagaaaataaaaaagacttCA
TTTGCATTATAATAATTCATCTACTAATAAGGAAGAAAAGTGGGTTTTTC
GTCAGAAGATAATAGAATCAAACGCCCTAAAGCTGGTTGGGCATGGAAGA
TAACAATAAATTATTGTGAGTTATTATGATGCATGTCGTAACCGGAAATT
AAACATGTTTATCAAAAACACTTAAGTTGATGAAGAACAAGTTTTGCAAA
TGTTAGCAAACATGTTAACATTGGTTTCCAGGGTAGTGCTTTTACGTCAA
ACTGGGTTGAATTTGACCGCGCACGACAATACTTTACCACACTTATGgtt
gggtcaagggctatcgtttaTCATGGTTTTAGATtatcgaagaaaatttt
actttacgAGTTATAAATTGGGAACGAGGAATAAATTGGCAAATTTGATC
TCACGACTCTTGGCAAGTTCTTAGCAtggttgcttattaaaaaaacgtgt
actcttaggttccaagtAAACGAGGGGGTTTgaataaatggggggggggg
ggttgaaaaagtttcaaaattttaataaatgagGGGGGGGgatgaaaaag
tttcaaaattttaataaatgagGGGGGGGgatgaaaaagtttcaaaattt
taataaatgagGGGGGGGgatgaaaaagtttcaaaattttaataaatgag
GGGGGGGgatgaaaaagtttcaaaattttaataaatgagGGGGGGGgatg
aaaaagtttcaaaattttaataaacgaaGGGGGcttaattgccggggggt
tggaaattgtaattACGAAAGCGCCATAATAAGGTAAATATAAGCTAAAA
TCGGGATATTTAGAGCagaataagggaccttctctttgaaagctgaaaaa
attctttaaaagtatTAAAGCTATTCTCAGTCCCCGGATTCTATATTGCT
AATTATTAGTGTTTGTACGGCAAGGCCAACAAAAAGGCCGTAAAAAAGAC
ACACAAGTAGAATAAATGGATAAATTAAAAGTTGTAATGTGCTGAAAAGA
TTATTTTAAGTGGAATATTTGAAGCCTTCTAAAAAGAAAATGGCTATAAA
TTGGCAAAACAAAAGTAGGTTTACACGATTTTACAAGAATGTACTCATTA
AGAATATTCATGGTCAACTTGGCCAAAAGTTTTAAGAATACACAAGGATA
TcaatcaccatcatggaatttagcaacaaAACCCAAGAATACCGTGAGAC
ACTATTTTCAGGCGTGCACAGTATGCAtagtaaaatcttttgaaaCGTAT
CAAGTCTTCAGTTCTCTATTTCAAAAAGTCATAATTTCGATGTAATAATT
CTTTCATAATTTTGATTATCTCCCATAGACGCTGAACGGGCGGTTTTATG
GCGGCCGAACAATCAGCGCGGCCACGTATGACGGAGTGACGTCATACAAA
ATTGAAGAGACTGAAGAGGAGCTTGAAAAACGTTTGGACGAATGGGAAAA
ATTTATCGGTGGAGATGATGAcggtgatgatgatgatgacgcAACAGTGA
CGTAATATTGATTGATGACATCATCGACGTACGACATGAATGCACTTGTA
TTCGTCAAAGCATTTGAGGTGAACTTTATTCCTTGGGAAATTTCATTGAT
GTAAAGTCAAAAGTAGATTCGAAGACGTTGTTGTGAGATACAGAgacttt
cataaaaaaattatacgaTAAACGGTTGGTCTGAATCCAGAATACATGAC
TATGGGTATGATTTATAAGACTTGGTGGAAAAATGACAGTGCCCACCATC
ACTATACATTGATATCGTTCTCTCCTCTCTGTAAGAGTCATTGAAAGAAT
CCACTAATTCAAATTGTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060095-exon-scaffold_334-1491911889:72247..72272 | TCONS_00060095-exon-scaffold_334-1491911889:72247..72272 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1510915933:72247..72272 | TCONS_00060095-exon-scaffold_334-1510915933:72247..72272 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1575043694:72247..72272 | TCONS_00060095-exon-scaffold_334-1575043694:72247..72272 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1491911889:72902..72967 | TCONS_00060095-exon-scaffold_334-1491911889:72902..72967 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1510915933:72902..72967 | TCONS_00060095-exon-scaffold_334-1510915933:72902..72967 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1575043694:72902..72967 | TCONS_00060095-exon-scaffold_334-1575043694:72902..72967 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1491911889:76225..76716 | TCONS_00060095-exon-scaffold_334-1491911889:76225..76716 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1510915933:76225..76716 | TCONS_00060095-exon-scaffold_334-1510915933:76225..76716 | Clytia hemisphaerica | exon |
| TCONS_00060095-exon-scaffold_334-1575043694:76225..76716 | TCONS_00060095-exon-scaffold_334-1575043694:76225..76716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:72247..76716 + |
Blast
The following BLAST results are available for this feature:
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