TCONS_00060068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060068
Unique NameTCONS_00060068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060068 ID=TCONS_00060068|Name=TCONS_00060068|organism=Clytia hemisphaerica|type=transcript|length=964bp
TTTGAGCATCAAAGGGCTCATTGAGTCTCAGGGAGTCAGCAAATGTTAAA
GCCATTTTCGAGTCACTCTATCCGTTGTGTCTTAATATCActatgattgt
ttttattttcagcaaaaaactGAATTAACATATAAAGCCCATAACAGGAT
ATGCCATTTCAGTCAAGATTTGCCAAAAGTTTTTTAACCAATGCTAGAGT
GTGGTATTTGATTGACGCTCGTGATCAAATCAATGGCAAACTTGCTGCTT
ACATTTGTGCGATACTTCAAGGAAAAATCAAACCTACGTATCATCCTTTA
AGTGACCTTGGTGATCATGTTGTTGTGACGAACTGTAAAGACATTGCAAT
GAGTGGAGAACGACCTTGGGAAACGAAAATCTATAGACACCATACTGGGT
ATCCTGGAGGTTTGAAGGAGATAAAAGCGAGAGATGTACACAAGAAAGAT
CCATGTGAGATCCTATGGAGGTCTGTACGTGGACAGATGCCAAAAACCAG
AAACAGAAACAGAGATATGAAACGATTACATCTCTTTGTAGATGATAAAC
ATCCATTTGCTTCTAATATTTATGCAAAACTTTTACCACCACATCCGATG
CCAAAGCGCTTGGATGAATATACTGCACATGAAATTCAGAACTATCCTAA
ATTGTTCTGATATACCTACTGGATAGTTTTagaataattaaaattttatt
tttctttaatttttctcatttgTGTATATATATTGTGTCATTTTTGCTTT
TGATAAACTACTGactgatttttaaatagtttctTACTTGATTATATATT
GCCTTATTGTAACACATTGCAATTGTTTTGGAGAGCTTTATACAtgaaac
tttttacaaaaattctactaatagtagagggcattttgtaaaatcgctcg
actgttttgttagaagcacttgttatacatttttggaaagctaaggggta
ggggaatcgaaatt
Run BLAST on NCBI

protein sequence of TCONS_00060068-protein

>TCONS_00060068-protein ID=TCONS_00060068-protein|Name=TCONS_00060068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MPFQSRFAKSFLTNARVWYLIDARDQINGKLAAYICAILQGKIKPTYHPL
SDLGDHVVVTNCKDIAMSGERPWETKIYRHHTGYPGGLKEIKARDVHKKD
PCEILWRSVRGQMPKTRNRNRDMKRLHLFVDDKHPFASNIYAKLLPPHPM
PKRLDEYTAHEIQNYPKLF
Run BLAST on NCBI

transcript from alignment at scaffold_333:40455..41418

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060068 ID=TCONS_00060068|Name=TCONS_00060068|organism=Clytia hemisphaerica|type=transcript|length=964bp|location=Sequence derived from alignment at scaffold_333:40455..41418 (Clytia hemisphaerica)
aatttcgattcccctaccccttagctttccaaaaatgtataacaagtgct
tctaacaaaacagtcgagcgattttacaaaatgccctctactattagtag
aatttttgtaaaaagtttcaTGTATAAAGCTCTCCAAAACAATTGCAATG
TGTTACAATAAGGCAATATATAATCAAGTAagaaactatttaaaaatcag
tCAGTAGTTTATCAAAAGCAAAAATGACACAATATATATACAcaaatgag
aaaaattaaagaaaaataaaattttaattattctAAAACTATCCAGTAGG
TATATCAGAACAATTTAGGATAGTTCTGAATTTCATGTGCAGTATATTCA
TCCAAGCGCTTTGGCATCGGATGTGGTGGTAAAAGTTTTGCATAAATATT
AGAAGCAAATGGATGTTTATCATCTACAAAGAGATGTAATCGTTTCATAT
CTCTGTTTCTGTTTCTGGTTTTTGGCATCTGTCCACGTACAGACCTCCAT
AGGATCTCACATGGATCTTTCTTGTGTACATCTCTCGCTTTTATCTCCTT
CAAACCTCCAGGATACCCAGTATGGTGTCTATAGATTTTCGTTTCCCAAG
GTCGTTCTCCACTCATTGCAATGTCTTTACAGTTCGTCACAACAACATGA
TCACCAAGGTCACTTAAAGGATGATACGTAGGTTTGATTTTTCCTTGAAG
TATCGCACAAATGTAAGCAGCAAGTTTGCCATTGATTTGATCACGAGCGT
CAATCAAATACCACACTCTAGCATTGGTTAAAAAACTTTTGGCAAATCTT
GACTGAAATGGCATATCCTGTTATGGGCTTTATATGTTAATTCagttttt
tgctgaaaataaaaacaatcatagTGATATTAAGACACAACGGATAGAGT
GACTCGAAAATGGCTTTAACATTTGCTGACTCCCTGAGACTCAATGAGCC
CTTTGATGCTCAAA

Coding sequence (CDS) from alignment at scaffold_333:40455..41418

>TCONS_00060068 ID=TCONS_00060068|Name=TCONS_00060068|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_333:40455..41418 (Clytia hemisphaerica)
TCAGAACAATTTAGGATAGTTCTGAATTTCATGTGCAGTATATTCATCCA
AGCGCTTTGGCATCGGATGTGGTGGTAAAAGTTTTGCATAAATATTAGAA
GCAAATGGATGTTTATCATCTACAAAGAGATGTAATCGTTTCATATCTCT
GTTTCTGTTTCTGGTTTTTGGCATCTGTCCACGTACAGACCTCCATAGGA
TCTCACATGGATCTTTCTTGTGTACATCTCTCGCTTTTATCTCCTTCAAA
CCTCCAGGATACCCAGTATGGTGTCTATAGATTTTCGTTTCCCAAGGTCG
TTCTCCACTCATTGCAATGTCTTTACAGTTCGTCACAACAACATGATCAC
CAAGGTCACTTAAAGGATGATACGTAGGTTTGATTTTTCCTTGAAGTATC
GCACAAATGTAAGCAGCAAGTTTGCCATTGATTTGATCACGAGCGTCAAT
CAAATACCACACTCTAGCATTGGTTAAAAAACTTTTGGCAAATCTTGACT
GAAATGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037783XLOC_037783Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060068-proteinTCONS_00060068-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060068-exon-scaffold_333-1491911889:40455..41418TCONS_00060068-exon-scaffold_333-1491911889:40455..41418Clytia hemisphaericaexon
TCONS_00060068-exon-scaffold_333-1510915933:40455..41418TCONS_00060068-exon-scaffold_333-1510915933:40455..41418Clytia hemisphaericaexon
TCONS_00060068-exon-scaffold_333-1575043694:40455..41418TCONS_00060068-exon-scaffold_333-1575043694:40455..41418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:40455..41418 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
173.432	156.606	170.901	171.961	82.0216	63.776	42.9106	44.4902	33.2967	28.0081	22.8141	23.5364	13.8945	13.9198	17.4219	13.9575	35.1551	31.242	8.56225	11.3559	25.0472	22.6818	94.4579	80.4909	17.0584	21.6111	12.4697	11.8744	36.5155	43.8567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR005823Ribosomal_L13_bac-type
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00060068 vs. Swiss-Prot (Human)
Match: RM13 (39S ribosomal protein L13, mitochondrial OS=Homo sapiens GN=MRPL13 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.439e-44
Identity = 78/167 (46.71%), Postives = 105/167 (62.87%), Query Frame = 1 
Query:  163 SRFAKSFLTNARVWYLIDARDQINGKLAAYICAILQGKIKPTYHPLSDLGDHVVVTNCKDIAMSGERPWETKIYRHHTGYPGGLKEIKARDVHKKDPCEILWRSVRGQMPKTRNRNRDMKRLHLFVDDKHP--FASNIYAKLLPPHPMPKRLDEYTAHEIQNYPKLF 657
            SR  + + T AR+WYL+D + Q  GKLAA     LQG  KP YH LSD GDHVV+ N + IA SG + WE K+Y  HTGYPGG +++ A  +H +DP  I+  ++ G +PK  +R   M+RLHLF D+  P     N+  +L  P  +PKRLDEYT  EI  +P+L+
Sbjct:    5 SRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNK-WEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLW 170
The following BLAST results are available for this feature:
BLAST of TCONS_00060068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM131.439e-4446.7139S ribosomal protein L13, mitochondrial OS=Homo s... [more]
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