Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=transcript|length=1576bp
ttctcaagcgaagactATGCAAAgagattctagctttacgatagtgctgc
ggatcatcagtggatagtaatCTATTATCAAACTTGGTTTGGCATTTTAC
AAATGaGTAAATAATTTAAACAAACACAATAGTAGGTAGGTCAATACAAT
GGCAACTCAAACGGCTGTATTAGATCTAGGAGCAAGTACTTGTAAATTTG
GCTTGTCAACTGATGCAGACCCAAGAGTCATTCCAAATTGTATTTCCAAA
GCCAAAAATGAAAGACGAAAAGTCTTCTACGGGGATCAGCTGAGTGAGTG
TAAAGATTTTTCTGGATTGTTTTATGTGTTGCCCTTCCAGAAAGGTTATT
TAGTAAATTGGGATGTTCAGCGTCAACTTTTTGATTACATGTTTTCAAAA
GAGAATCTCAAAGTGGATGTGACAGAAACCAATTTAGTTTACACAGAGCc
tatttttaattttacatCTATAAAAGAGTGTTTGGATGAGATTTTCTTTG
AAGAACATCAATTTAAAGCTGTCTGTCGTAAAAGAACTGCTGAACTTGCA
AATTTCAAACATGCTGCTGAATCAGCAAAGAATCCCCTGTGTAGTCTAAT
TGTAGACTCTGGGTTTTCCTTCACACATATTTTGCCGGTCTGCCAAGGTC
AGATTCTGAAGAGGTCTGCACGTAGAATTGATGTTGGTGGTAAAGTGATG
ACAAATTATTTGAAAGAGATTATCTCTTATCGTCAGCTTCATGTGTTGGA
TGAAACATATGTTATGAATCAGGTGAAAGAGGATTGTTGTTTTGTTTCCA
CTGATTTTAACCATGACATGGAGACTACAAAACAGAAAAGGAAATTAAAC
ACCATTGCTAGGGACTACATATTACCAGACTATACCAACGTCAAACGTGG
TTACATAAGACCAATTGAAGAAATGTGGACCAAATTCACAGGTACAGAGC
AATTACTGAAAATGAACAATGAGCGTTTCACTGTACCTGAATTACTTTTC
AATCCATCAGATGTTGGTATACAGCAAATGGGAATACCAGAGGCTATTCA
CCATTCTATCCAAACAACTGAAGTCCTTCAGCAGCCtcatttctatcaaa
atatCATCCTTATTGGAGGCAATGCTGCAATACCTGGTTATCACAAACGT
GTCACGTCTGATGTCCGCAAATTATGTCCAGATGTTTTTGATTTGGATAT
TCTTTGTCCTGATAATCCAGCCACTTATGCATGGCAAGGAGGTGTGACAT
TGTCCAAAACTGCGgattttgtttcgaaatattGCATCACTAAAGCAGAG
TATGAAGAATCAGGGAAAAATATTTgctttcaaaaatttgataagTAGCT
TTATTCATTGTAAAGGAGATACGACTTTGTTGATTTTGCAAACTTAATAG
AACTTTGTTTTTCCTTATAATATGTTACTTGTTTTAGATTGGTCTGTCAA
ACTTTGTAATTTTAGCATAGATTTATGTTTGTTAATTAATAATtacttat
tttttctttttacatcttAAGCATTATTGCTTTCTTATAATTTGGGCCAA
ACATTAGGATCTGTAACATCTTTTAT Run BLAST on NCBI protein sequence of TCONS_00060030-protein >TCONS_00060030-protein ID=TCONS_00060030-protein|Name=TCONS_00060030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MATQTAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSE
CKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTE
PIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSL
IVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVL
DETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKR
GYIRPIEEMWTKFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAI
HHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLD
ILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFDK Run BLAST on NCBI transcript from alignment at scaffold_333:227032..229387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=transcript|length=2356bp|location=Sequence derived from alignment at scaffold_333:227032..229387- (Clytia hemisphaerica)
TTCTCAAGCGAAGACTATGCAAAGAGATTCTAGCTTTACGATAGTGCTGC
GGATCATCAGTGGATAGTAATCTATTATCAAACTTGGTTTGGCATTTTAC
AAATGAGTGAGTTTGAAATTTTGACTGCCATCCCTACCTTATTAGCGTAC
ACTTGCCTAATTCCGAACGGTTTTCAATGTTTTCAATCAAATTTCAGGCA
CAAATTATCAAATGAAAAAGTTTTTGTTAACAGAACAAAGTTCAACCTTT
CCCCTATCTTTCCAAACAAAAATTTCAAATAATATTCCATTTGCCGCTAA
ATAAATATAAAACAAAAACATGCTCTCACATGTTCCTTATTACAGACATT
CTTCCCTCATCCCGGACGACGTCTCTTTTCTATAAAATCTAGTGAACTTC
CACTTGAAATCTTTCTTGAAAGTTGAAATAGAGAGCTGTAGGTAAGGTGT
TCGGAATTAGGCATTGTCCGAAATTAGGCAAGTGAACGGTAAGTGGATTA
AATTTTACATGGATCAATGTTTTTTTGCCAAAACCCCCTGGCAAAATGAA
AGGAATTAGGTATAAAAGAGCCTGATTTGCGTATAACTGTCTTAAAGTGT
TTTCAAAAATATTTGANAAGAGCCTGATTTGCGTATAACTGTCTTAAAGT
GTTTTAAAAAATATTTGAGGTTGGCTATACTGGGACCGCTAGTGCTGCCA
AGCTACTATTTTTTTGCTGGGCACAGTTTTTTTATCAATGATTGTCATTG
TCAATGATTGTTTTTCCTATTTGGCCTTAGCAATATTGCTAGTTTGAGTT
AACAGTATTTTGAACTGTATATATAATATTATCCGTTAGATTTTGTCATG
GTAAATGAGTCAAAATTTTATTCCTTTTTTTCGTAGGTAAATAATTTAAA
CAAACACAATAGTAGGTAGGTCAATACAATGGCAACTCAAACGGCTGTAT
TAGATCTAGGAGCAAGTACTTGTAAATTTGGCTTGTCAACTGATGCAGAC
CCAAGAGTCATTCCAAATTGTATTTCCAAAGCCAAAAATGAAAGACGAAA
AGTCTTCTACGGGGATCAGCTGAGTGAGTGTAAAGATTTTTCTGGATTGT
TTTATGTGTTGCCCTTCCAGAAAGGTTATTTAGTAAATTGGGATGTTCAG
CGTCAACTTTTTGATTACATGTTTTCAAAAGAGAATCTCAAAGTGGATGT
GACAGAAACCAATTTAGTTTACACAGAGCCTATTTTTAATTTTACATCTA
TAAAAGAGTGTTTGGATGAGATTTTCTTTGAAGAACATCAATTTAAAGCT
GTCTGTCGTAAAAGAACTGCTGAACTTGCAAATTTCAAACATGCTGCTGA
ATCAGCAAAGAATCCCCTGTGTAGTCTAATTGTAGACTCTGGGTTTTCCT
TCACACATATTTTGCCGGTCTGCCAAGGTCAGATTCTGAAGAGGTCTGCA
CGTAGAATTGATGTTGGTGGTAAAGTGATGACAAATTATTTGAAAGAGAT
TATCTCTTATCGTCAGCTTCATGTGTTGGATGAAACATATGTTATGAATC
AGGTGAAAGAGGATTGTTGTTTTGTTTCCACTGATTTTAACCATGACATG
GAGACTACAAAACAGAAAAGGAAATTAAACACCATTGCTAGGGACTACAT
ATTACCAGACTATACCAACGTCAAACGTGGTTACATAAGACCAATTGAAG
AAATGTGGACCAAATTCACAGGTACAGAGCAATTACTGAAAATGAACAAT
GAGCGTTTCACTGTACCTGAATTACTTTTCAATCCATCAGATGTTGGTAT
ACAGCAAATGGGAATACCAGAGGCTATTCACCATTCTATCCAAACAACTG
AAGTCCTTCAGCAGCCTCATTTCTATCAAAATATCATCCTTATTGGAGGC
AATGCTGCAATACCTGGTTATCACAAACGTGTCACGTCTGATGTCCGCAA
ATTATGTCCAGATGTTTTTGATTTGGATATTCTTTGTCCTGATAATCCAG
CCACTTATGCATGGCAAGGAGGTGTGACATTGTCCAAAACTGCGGATTTT
GTTTCGAAATATTGCATCACTAAAGCAGAGTATGAAGAATCAGGGAAAAA
TATTTGCTTTCAAAAATTTGATAAGTAGCTTTATTCATTGTAAAGGAGAT
ACGACTTTGTTGATTTTGCAAACTTAATAGAACTTTGTTTTTCCTTATAA
TATGTTACTTGTTTTAGATTGGTCTGTCAAACTTTGTAATTTTAGCATAG
ATTTATGTTTGTTAATTAATAATTACTTATTTTTTCTTTTTACATCTTAA
GCATTATTGCTTTCTTATAATTTGGGCCAAACATTAGGATCTGTAACATC
TTTTAT Coding sequence (CDS) from alignment at scaffold_333:227032..229387- >TCONS_00060030 ID=TCONS_00060030|Name=TCONS_00060030|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_333:227032..229387- (Clytia hemisphaerica)
ATGGCAACTCAAACGGCTGTATTAGATCTAGGAGCAAGTACTTGTAAATT
TGGCTTGTCAACTGATGCAGACCCAAGAGTCATTCCAAATTGTATTTCCA
AAGCCAAAAATGAAAGACGAAAAGTCTTCTACGGGGATCAGCTGAGTGAG
TGTAAAGATTTTTCTGGATTGTTTTATGTGTTGCCCTTCCAGAAAGGTTA
TTTAGTAAATTGGGATGTTCAGCGTCAACTTTTTGATTACATGTTTTCAA
AAGAGAATCTCAAAGTGGATGTGACAGAAACCAATTTAGTTTACACAGAG
CCTATTTTTAATTTTACATCTATAAAAGAGTGTTTGGATGAGATTTTCTT
TGAAGAACATCAATTTAAAGCTGTCTGTCGTAAAAGAACTGCTGAACTTG
CAAATTTCAAACATGCTGCTGAATCAGCAAAGAATCCCCTGTGTAGTCTA
ATTGTAGACTCTGGGTTTTCCTTCACACATATTTTGCCGGTCTGCCAAGG
TCAGATTCTGAAGAGGTCTGCACGTAGAATTGATGTTGGTGGTAAAGTGA
TGACAAATTATTTGAAAGAGATTATCTCTTATCGTCAGCTTCATGTGTTG
GATGAAACATATGTTATGAATCAGGTGAAAGAGGATTGTTGTTTTGTTTC
CACTGATTTTAACCATGACATGGAGACTACAAAACAGAAAAGGAAATTAA
ACACCATTGCTAGGGACTACATATTACCAGACTATACCAACGTCAAACGT
GGTTACATAAGACCAATTGAAGAAATGTGGACCAAATTCACAGGTACAGA
GCAATTACTGAAAATGAACAATGAGCGTTTCACTGTACCTGAATTACTTT
TCAATCCATCAGATGTTGGTATACAGCAAATGGGAATACCAGAGGCTATT
CACCATTCTATCCAAACAACTGAAGTCCTTCAGCAGCCTCATTTCTATCA
AAATATCATCCTTATTGGAGGCAATGCTGCAATACCTGGTTATCACAAAC
GTGTCACGTCTGATGTCCGCAAATTATGTCCAGATGTTTTTGATTTGGAT
ATTCTTTGTCCTGATAATCCAGCCACTTATGCATGGCAAGGAGGTGTGAC
ATTGTCCAAAACTGCGGATTTTGTTTCGAAATATTGCATCACTAAAGCAG
AGTATGAAGAATCAGGGAAAAATATTTGCTTTCAAAAATTTGATAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060030-exon-scaffold_333-1575043694:229282..229387 | TCONS_00060030-exon-scaffold_333-1575043694:229282..229387 | Clytia hemisphaerica | exon |
| TCONS_00060030-exon-scaffold_333-1575043694:227032..228501 | TCONS_00060030-exon-scaffold_333-1575043694:227032..228501 | Clytia hemisphaerica | exon |
| TCONS_00060030-exon-scaffold_333-1510915933:229282..229387 | TCONS_00060030-exon-scaffold_333-1510915933:229282..229387 | Clytia hemisphaerica | exon |
| TCONS_00060030-exon-scaffold_333-1510915933:227032..228501 | TCONS_00060030-exon-scaffold_333-1510915933:227032..228501 | Clytia hemisphaerica | exon |
| TCONS_00060030-exon-scaffold_333-1491911889:229282..229387 | TCONS_00060030-exon-scaffold_333-1491911889:229282..229387 | Clytia hemisphaerica | exon |
| TCONS_00060030-exon-scaffold_333-1491911889:227032..228501 | TCONS_00060030-exon-scaffold_333-1491911889:227032..228501 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:227032..229387 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004000 | Actin |
Blast
BLAST of TCONS_00060030 vs. Swiss-Prot (Human)
Match: ARP6 (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1) HSP 1 Score: 440.269 bits (1131), Expect = 2.446e-150 Identity = 211/396 (53.28%), Postives = 288/396 (72.73%), Query Frame = 2 Query: 161 TAVLDLGASTCKFGLSTDADPRVIPNCISKAKNERRKVFYGDQLSECKDFSGLFYVLPFQKGYLVNWDVQRQLFDYMFSKENLKVDVTETNLVYTEPIFNFTSIKECLDEIFFEEHQFKAVCRKRTAELANFKHAAESAKNPLCSLIVDSGFSFTHILPVCQGQILKRSARRIDVGGKVMTNYLKEIISYRQLHVLDETYVMNQVKEDCCFVSTDFNHDMETTKQKRKLNTIARDYILPDYTNVKRGYIRPIEEMWT--KFTGTEQLLKMNNERFTVPELLFNPSDVGIQQMGIPEAIHHSIQTTEVLQQPHFYQNIILIGGNAAIPGYHKRVTSDVRKLCPDVFDLDILCPDNPATYAWQGGVTLSKTADFVSKYCITKAEYEESGKNICFQKFD 1342
T VLD GA K G S + + VIPNC ++K R K F +Q+ E KD SGLFY+LPFQKGYLVNWDVQRQ++DY+F KE +VD +TN++ TEP FNFTSI+E ++EI FEE+QF+AV R L+ ++ ++ LC +IVDSG+SFTHI+P C+ + K + RI+VGGK++TN+LKEIISYRQLHV+DET+V+NQVKED C+VS DF DM+ K K + NT+ DY+LPD++ +K+G+ +P EEM K+ EQ+L++ NERF VPE+LFNPSD+GIQ+MGIPEAI +SIQ QPHF++NI+L GGN+ PG+ RV S+VR L P +D+ ++ P+NP TYAW+GG +S+ DF +T+ +YEE+G ++C +KFD
Sbjct: 3 TLVLDNGAYNAKIGYSHE-NVSVIPNCQFRSKTARLKTFTANQIDEIKDPSGLFYILPFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSE-LCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYRQLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKGFCKPREEMVLSGKYKSGEQILRLANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVLPENPITYAWEGGKLISENDDF-EDMVVTREDYEENGHSVCEEKFD 395
The following BLAST results are available for this feature:
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