TCONS_00060016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060016
Unique NameTCONS_00060016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060016 ID=TCONS_00060016|Name=TCONS_00060016|organism=Clytia hemisphaerica|type=transcript|length=611bp
GTTGAAAGATGGATATGCGTCACGCCTTTTTTTCATTCCAGAGTTAACAA
CTTTTGGAGTAAGACCATTTTTGCACGAAAAGATCGTTTAATTCggcatt
tgtttttgtttgaaacaaGTATCAAGAGGGTATCAATATTTTGCTGAAGG
AACTGTTTTAACAACAAAAGGATGGCACAGGTTGACAAAGCCGTGACTGG
TATTGTCTCGCAGCAAGATGAATTCTTAACCATGATGCAACCCTTTGATC
AAATGTCAGCTAAACTATCAGGTGCTCCAATGGCTATCAATATTCTTGGT
CAACTGTGTTATATCGCGACAGGAGTTGAAGTGGATTTGAGAGTTGAAGG
AGTTAATGAGAAATACAAGCATTTAACTAATACAAATTCATTGCGTGCTT
GTCTTATGCAAGTTTCACAAGCTGGGCAAAGAGCCTTTCGAACAGCCGAT
GGAAATATGGAATACATATCAATGAGCTGCGAAAGGGTACCTGGATTAAT
GAGATCTGCATTGGGCATTCTGTTGTCTCCAACATCGGAACCTTCAGACA
TTAAGAATTTTCTTCCTGAAAGACTTCTGgcaatcaaaaaagtttccGAC
GATGCCAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00060016-protein

>TCONS_00060016-protein ID=TCONS_00060016-protein|Name=TCONS_00060016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MAQVDKAVTGIVSQQDEFLTMMQPFDQMSAKLSGAPMAINILGQLCYIAT
GVEVDLRVEGVNEKYKHLTNTNSLRACLMQVSQAGQRAFRTADGNMEYIS
MSCERVPGLMRSALGILLSPTSEPSDIKNFLPERLLAIKKVSDDAK
Run BLAST on NCBI

transcript from alignment at scaffold_333:390567..413651+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060016 ID=TCONS_00060016|Name=TCONS_00060016|organism=Clytia hemisphaerica|type=transcript|length=23085bp|location=Sequence derived from alignment at scaffold_333:390567..413651+ (Clytia hemisphaerica)
GTTGAAAGATGGATATGCGTCACGCCTTTTTTTCATTCCAGAGTTAACAA
CTTTTGGAGTAAGACCATTTTTGCACGAAAAGATCGTTTAATTCggcatt
tgtttttgtttgaaacaaGTATCAAGAGGGTATCAATATTTTGCTGAAGG
AACTGTTTTAACAACAAAAGGTAGGTTATTATAGTTTTCAATACAGAACA
AAAACCTGTATTTCTAAAAATTTCCAAGATATTTCAAAGAAGAATAATGC
ACAAAGAgataatcaaaaaaatcaaaactgttttaaaattcTAATCTTGA
ACTATGTATAGGTTTTTAGCGTACTACAGACCTAAATCCCTTTTTCCTTT
TGAAAGACACATCCATTCTATCTGAGCACTAACCGTTGGAGTATTGagct
aGATCTGTGACATGTAATAAATATGGATCCCATCCCGATTGAAACTTTAA
GTATACCACgagtttcaattttttgtttttttatttttattgtaattttt
gtCTTGATTTTTTAGAATTAATTACAGTTACCGTATtatttcgaataaac
gcccagggcgtttatcaatttttcaggattttaagaggggcgtttatttt
cGAAATGGGCGTTTAGAAAAAGCCGCGATTAATAAATATTCTTTAACCAA
GTTTTCTTTAATAAAGTGAGTGGGAACCTTTTTTTGCCCTTTTGTTCTCT
TTCTGTTCAAATATGCTAGTCAATTTGACACTAGTCGTGGGAATCGTCAA
TGTGTGAGTGGCCCCTtacttaaaatgaaattttgcactcTGTCTTAGAT
AGTCAATATCTATCACTGGTGAAAGTTTCCAGATAAGAGCTCAAGTAGTT
CCTGAGTTCCGACAGGTGgtcaacgtgtattttacagaccgatCAGGAAC
GAATTCTTTCTGCTACTAGtctcttttatttgataaaTCAGCCATCAGAA
ACAAATTTCATTCGAATCGAAcgagtcaatcagtcaatacatgattttgG
TCAAGATCACGTCTTTAATTTAAAATACCAACAAAACAGGTGGCTGAAAC
TAAATTTTGCAAATCACTTTAAATTATCCATAtcgatggtcaaaatttta
aggtcatatagcacttgtcaatcttgagGCTTACCNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNccccccccccccccccgagatACTTTCC
CTATACTATAGGAAAAAATTGGACTTGCTCGAAAGGTTTATGATTTACTT
AGAAGACACCTATATGCTTGCTAGCAGTCCTTGTGGTTTAATCCATGTGA
ATTTTAGACTTCCAAAGActtgaaaatgactgaaaatgggtAAACGTCAG
CCACACACAGGTGGTGGGTGCACCAGAGAGCTCTGAATAGTTGTTTATAA
TTGATTAAACCATTACGAATATAGTCTAATTAGATGTCTTCTCGAAAACG
TTGAAGTGCATAGCTCATTGAACTTTCAATcttcaatcttcaaaaaaaga
cCTAAAGACTTTGCAAAAATTCATTTCCTTCAATGTCGAGTGGATTTGGC
TTTTAGACTTGTCACCCAACTCtcaaaatccaataaaaacaacatgGCTC
TTgtaaaaatgggttttcagaGCTTATTTTGAACTAAACATAAGTCTACA
ATCTTTAGTCCATCCAGGATTGCACTTTTGTTATGGACTTGTTCATTTGG
CAATAATATTTCTGGGAATATGTTGTTGTTAAAGTTTCTCTCAAAATTAT
GTTGacacttttcacttttttaataattttttaaatcagatTTATGCTAT
ATTAAAAAGCTGTAtccaccgttggaaagatattttcacggaaagaaaat
ttttaaatttaaagtcAGACTACAGCATTTAAGTTGTAAATGTTTTACCT
TTagcaagaaaacaataaaacttTAATGTAATAaccgtgtaagaacccat
tGTTAAAGATTCCAAATTgtaatatctcgactttggaaataACTTAGACA
AAAGATTTCATGATTTGGCTCAAAACCAGGGAAGAAGCTAACACGCAAAA
GATCTCAAATCATCTGCAAGGTTATTGATATTTAAATCAAAGTCGCAATG
AAAAGAATACTGAGCAGTGTTAATACGAAttaccaaaacaaaaaattgat
attgttgtatttgacaaaatttgaacCCAGCCcctttgtttgctttttat
gattctgatagcactCACGAAAGGTTTTCAGATTGTACCAAGTCAATCAT
CAGTATCATCAAAAAGTGGTACATACTTGGTATTTGGAAATGGAAAGTCT
TCTTTCTAAAGTCTCAAACCAATACTTAaaactagccataattttcatta
aagtgccaccgcagaagaacgatcaaataagttgttgaatttggaaagaa
atgttactgatagccgtTACTTTTGTNNNNNNNNNNNNNNNNNNNNNNNN
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TTGTCCTGCTTGAATTTCGGAAATGTGCAACATTCAATGCAGTGTCTAGA
TTAATCGCAAAGTCTTCCTCTGCCATACTGTGAAAAATCTTCACATTATT
TTAggagcaaaaagcaaaaaatgtaattaCAGTTGACACTGTCTAatttg
acgttctactatttgataAGGNgcaaaattatgagatgttttcccaactt
tccctcacgagtgaagctatgaatgccatcctcggaagctttaggcttcc
tgcggtggcaatgaGCAATCATTTTCCTTAAACGCCCTCTCGAATAAACG
TCCCTTTCAAATATGAGCAAAAAGGCCGAGGGGATGTTTATTGAAACAAG
TACACGCTTtctatataagaatatactttataagaatacttgtgataaaa
ttagcgaaaaagttaagaatatgctaagaatatctcCATCATGGAATTCA
GCAACTGAACCTTTTAGTGTATTTTCAACTGTAAATTACGTAAAGACtca
agtttctttcaaaagggaAAATCATTTTGGTTAAATATATGTTaataatt
gtattttttttcagtgtGTAATAGCTATCGTAAAATAAAATCTGTTTTTC
GGGTTCGGGATTTTCGTCACATTTTCCAAACCTTTAGACGAAGAAAATAT
ACTTTGACCTTTGAACGAGAAAAATACATTCAATATTTTACGAGTAAAAG
TGTGCTAACTGGTTTATTTATAGTCAACTTGACAAAACATCAACAAACTC
CTCTCTCTTCATTtctgtaatttttgtttttcacttCCTTTATTTTGgcg
aaatcaacatcaaaacattcgaaaaaatgtTTCTGTGTACCGAAACCTGC
ATCATATTgtttttttaccaatattttttgcaatatattttaaaacaaaa
gaagacgaatgaaagtcgaaaatttcgcataataatTGAACATCAACAAC
GAAaacgcgtgaaacgtgactccaGCAGCATAAtggattttgaatgaagc
gttacacaaaatatacacattGTATTGTAGACAGGTCGTAGTTACCCTGT
TTTCTTATgcaaaatctcaatccattaaatgcgactaaaaaattcctttt
tttaagGTAAAAAAGATCTTTTAATTCGGAATAAATGAAAGAACTGCAat
ataccagtggataccccttaaaacccacaataaaaagtggtaccctctat
ctcattgtttagttggagtgtaaggctgaaactttttgtgttgaaagtaN
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NNNNNNNNNAAGATGGATTGGTATAGAATTGAATAGTTACCATAAGTCAC
TGTTTTTACTTCGGGTATTTTTAGAAGTCCAGACTTACAACGAATTACTT
CATGACGGTCAGCATCATTAAGACGTTTGTATTcaagagtttgtaaaaga
gaaagaggtaattttcgattcaaaagtttgaaaagaaagaGGATATTAAG
GTATttgacaaagtcaaaaaattgaagaagtttaaattctaaaaacagaG
GAAAAGTATATGCACGAAAGTCAGAGAAAGACATGATTCTAAGAGATTGT
TTTGGAAGAATAAGAACTCGACGGGCGTGGATTGTTTGGCGTTGCTCCCA
AATCTGGGCTGCATAGGAGGCGTGACATtggaaaagggaaaaatatAATG
ATGCTAGTGTTTTcttgtcgacataatgccgaAGTTTACTTAGAGCTCCA
TTAGCTCGCTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNCTTGCTGGGTCTAAGCCGATGTccgttgattttgattttc
aaatcataatCGATCTTCTTTCGGACAGGACGAAACAACAAAAGCTCAGT
TTTACTAGTGTTGAGAgagattttatttgctttaagcCATTCATAAGAAG
CTTTAGATCGATATTGGCTTGCTTAGCGATCGGTTTCATTCACataaagg
agaaaaagaagTGGGCCTAAAACAGAGCCTTGAGGGACACCATGTTTCAT
ATTTTTAGAAGTAGAAATTTTACCAGAGACTGAAACAAACNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGGAAGAATCTGAT
AAGCACCAAGAATATCAAGAAATTTAGAGTGAGAGATTACAGAGTCACAA
GTCAAAAGATCTATGTTGAAATCGCCtaataaaataacatttttgttttc
ttggcaGGCTTTCTTCAGCAAAGGAGatgtaaatttttattaaaaagatc
aaCGTCAAGGTCTGGATGTTTGTAGATGCAACCAACGATAtagtttttcc
tattttttaagACGATTTCAGCAAAAGTTGACTCAAGATTACCACAGGCT
GAGTGCACTATCTTTGAAAGATCTGTGCGAGGTTTGCTTTTGAGAGATTT
GGAAATNGGCTGGGGTATCAAAGGATTTAAAGCCGTTGATAGAAAGTTCA
GTGTTTTCGATAGAAGATTTGAGTCTGGTTTCACTGATACCGAGAATGCT
AAAATTATGATTGAGATTATGAAGTAAAGTAGTAAGATTGTCATGatgtt
tttctaaagaacagATGTTGAGatgaaagcaagaaaaattttgtttttta
agaggAAGAGAAGCAGATTCTTGAGTACTAGTATTTGCAGTCGAAATGAT
TAACGTGATCATCATAAGTAATATTATCAAGTTGATCGTCGATTTGTgaa
tgaaaattagaaaaagaattCGAGATAGAATTTAGatgtttaaaataatt
ttttaagtgaCTTATGTCTTTACCAATGGGTAATTTTTCATCGGATTCAA
GATTAGGTAGAGCATCATGCCTACAAAGTTTACANNNNNNNNNNNNNNNN
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GAGGTGTCTTGAgtgtctttttgtgttggagaATCTTGTGTAGTAGTGTA
TAAAGGTATATCTTGAAGTACTTCTTCGATGTTCTTTTGCTGCTTTCTTG
TTGTCACATTCATTGTAAAAAAATGGCTCAAGAAACAAAACGCCTACTTT
TTACGCgccaaatatttttgacacgtcTGCACTCTACGGATGTCAGATGA
TGAATGAGCAAACTGGGAAAACAACGCATAGCAGATAACGACACCTTACA
ATGTAGGAGATGTGCTAGACTTGTCCATTATGCTTGCTCTGAGCCCCCGG
CCTATCAGATTCAGCTTTGTATGCAATAGAAAAGCCGGCGCTTCGAATGT
GGAAATTGTGCTACAATAACGTCACTCTTACTTTGAGAGGATTAAAACAA
GCAGACAAAAAGCTCGCAGTAACGTCACAACAAAAGAAGCAGATAAAGAT
GAACATCATGGATTGAAATTAGGTTTCAACGAGATAATAACCTCTCTAGA
AAGGAAAGTTGAGAAgctaatgaataaaaaagacGTCAACAAAGAACGGA
ACAACAAACAATCTGAAACACAGCTTAACAacacagaaacaaaaaaaaca
atcatatgCAAGAGTCACCAAAGAAGATCTACAAAAACAAGAGGTGACCA
taaaaagtttcatcaaatTAGTTTACGAAGAGGAGCGTTGGCTCAAATCA
ACCAAGTGCAACATCATTGTGCATGATTTAGGTGAAAACAAGCACGAAAC
GCGAAGAAGAGCAACGAGTTGGTGGCAAAGATTTTATAGAAAGACTACTG
AAACAACAAATAGGCTTCGATGTGACGATAATCAAGGTAGAACGCATAGG
TGCTCATAAAGATGAAATGTATACAAATGAACGATGGAGACCATTAAAAG
AggggttttcacttttacgtTATGACGGTATTGgacctttttacccccgg
taaatcggtattacgagaaaaaaacgacgggattacggtattttattttc
taccggtatcggtaaattgcctgtttttttgtcggtattttgatatttat
ttttttataaccttttagtttcttcatgagtttcaagcaggaaaattttc
aaaaaagataagtctatcCCGCTATTTTAATcccttaattttttttcctc
gcttcgctcgcacaatcttggatttcctattgacttattgtcatagtgag
gttattcaaaataagccaaactttacgatatctaaacaaatattttcgtt
atttttctgtgggcgcatttttttaatgacaaccttcaataattagtaaa
agcAGGTAGttccaaggatttattatacactggatatacaagtaacagat
ttttgccgatttctcgtgtactggCTCTGTCcacagtaatgatattattg
ttcaccctccttccctcattaaatgatttttcgaagcatttttattgcat
ttcttatcgaaaatcactcatccaattcccaaaagagacttaaaactttc
ctgtgagagtcagattctttcatttaattgctaattataagtcgttgtga
cgtttcaagctgtcagaaagatgcaaaagacgtgttcgtataagaaattt
aatgttgacacaaattttcaaacttcaacctcgaAAAAACCactttgcca
ccacgtgcctccaaaagattttcataccacagtggagccaagacactcaa
gtcttatgtatcttaatttcagctcttcttgCAACagtctttgaaagata
tttccaattgaaaattcaCTATAAgtattttgtctgaatttcttgtctaa
tgatgtttttcccacattagatttcacaaatgtatccagctcggaatgct
agccttacttacaaacttttttttctgaaaatgtacaaaaaaaaagagct
agagaactttttaaaaataatactgataaacatttttacccagtgtataa
taaatctttggtagttgttatgcgcagatatgtaattcttgcgcagatat
gtaatttctgcgcagatatgtaattattttgcgcagatatgtaacTTCTG
CGCAAATATGTAATTATTTTGCGCAACTATGTAATTTTGagctgcgcaga
tatgtaattaaatttctgcgcagatatgtaaaacacgacctttttgactt
ggttattttttgaaaaactaactAAATTTTAAGGTCGGTTAATtacaaga
agtaatatcttGAACATTGTTCTTGGACTAAGGCAAACATTTGgcgattg
ttgtttttattataagcatcatctttataagaaacaagtcaatatatttt
tatcaaagtgatattggctttcggcgtttggttcTATCAAAGCAACTACT
TAGGGGACTGTGCTAAtgaggaaaattttgtttttcttgtaagcatcaac
tttataagaacacaattcataactctcaaaccaatgattattagctttcg
gtgttaggttttttcaaagcaaatagaGGATTGTACTTAagctaaaaaaa
tttatttttcttataagcattaactttataagaacacaattcataactcc
caaaccaatagatattagctttcggtgatcggtattttcaaagaaaacat
aGGATAATGCTTGAGctggaaaattttgtttttcttataagcatcgactt
tataagaacacaattcacaactcctaaaccaatgattattcgCTTTTGGC
GTTTGGTTTTTTCAAAGCATATATAGGATTGTGGTTAAGctaggaaaatt
tatttttttataagcatcaactttataagaacaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNataattacatatttgcgcagaa
attacatatctgcgcaaaataattacatatctgcgcagaaattacatacc
tgcgcaaaaattacatatctgcgcacaacagtagttctaaaaacatcttg
tgcagcatcgaacgattaaaaaataattcacataaTGATGcccatgatgc
gttttcaggcaatctaggcattctaaattttaatttttttcttgggcaaa
actcttggaacgccgcaccgtGTACGGCAGatacgtcgctcgccgtacca
tatttttgccaacaaatggacagtgttaaataaaatcaaaaactgtgtga
ccaaacaaggcatacttggctaacaatgaCGTATTAAgtccgtttttcaa
taacaaaggagagcgaaaattgtcggaaaaattttcgcgctcgcttcgct
cgcattcttattttccatttattttctaTTCCGATAGGGGGGTTCAACTT
TATAATTCGcgtcctctagttgcaccacatcaccacctctatgaagcctg
cgttgaagtctacggcttctcagaccatgattgccccaaacctcgatttt
taactaattctcaatataaaagacatcttacgggtctgcgaggaagaaat
tattgggggaaaggcttaatttaGCATTTTCCTCCCGTAACAAGTAAGTA
ACTTTGGtgcggcagacctaaaatattgctttatgaaagctcaaatagct
gtaaaagaggcctcaaaaagtcgacgatatcgagaaaaaggtcacaaaac
tagcaaaaaactttatatattggcgaaaatgttttgtacaagaataggtc
aatctgtttaaaagagaccataaaaaggttaaacttagcccaataaggtc
acaatcgtttaaccaaagatgtaaaagcaaaattggtgcgtgaacgtgaa
aatggtttttttcgcgcgtgaatacgtgaattgagggttgactggggggg
ctcataaagtacaagacttgtttgtacagtttctaattttttactacaca
atagatttgataactgaaaaatcattattttcgaaaaaaacataaacata
atatcggtatcggtattaggcttccttcaccgacggtattacggtatttg
acccaaaattttctcggtatgacggtatttaagacccatgaaacctcccc
ccccccttaaaagtTAATCTCGAGAGTGAAGAAGAAAGGATTAGAATACT
TGGATCAGCCCACAAACTAGATAAAGATGATTTCAGAATATCAGACGAGT
TTTCAAGGAAAGAACGCGAGATAATAAAACAATAGCATCATAAAGCAAAA
GTAAAAACatcgaaagaaaaagacaagaGTCATCTATGTCATCTAACTct
acttgaaaaaatttacgACGGAAACAACATGATTGTAAGAAGAGTGGGTT
AGAGGCCCAGGTGACTAACTGTAAAACTCTATAACAGAAAtgacaaacga
atggaatgataagatttataaattgtaaagatgtaagattgtaaaatagc
tacagtagtcagaaaaatctaccatcaaaatcattgggcttttccagaaa
aaattgaatattgcagAATATTTTTggggggttggaggatataacattat
tttggaaatttaccctgtgacttttgacccacaGACAGCAAGTCTAACCC
CCCAGACAGCAGGTCTACCCCtcagacaagcatcagttgaccccacagat
atctgtaaagcccgaatggctagataggcaactttaagctttctccagca
aaaaaaagtgaagtaaaaatttggctttttaaatttcgtgccgatggata
ggatctagcattttaattgttttcggagcgcNatttcgtgccgatggata
ggatctagcattttaattgttttcggagcgcgagatcaaaaaaagtaggc
ggcaaacgctatttcacatctcaCAAaccggtgaaattgcatattttagt
cacgtgactttggtaggaaatccttccaaacctaggcttcacttttcgat
aaaagccgcaaatctagcacttcgggctttacagatctgtggttgACCCC
ATACCCCTCCAGCTTCTGAACTAGAAAAttgcagggtaaaaactagccaa
ctttaagctttaaagaaataatactctttgagattaaaattttccaaaat
ctcaaCGCAATAatccatataaaaatatattaagaaaAGCTCGTAACTGC
AGGCTTCAGTCATAATAGAatggattcatgtataaaacactaaatttggt
caactagttccgttattacgggattttaNattttaaacagtaacaccaaa
tttggtcaactagttccgttattacgggattttaggttttggctggaaag
gcttatgatgacgtcatcacaaaactttaaaccttcataacttttgatag
gaagattttgaaggcatgttttataactcgattttcatcagcatttcatg
ttctttccgctgataccatcagactttaaatattatcaaaaaaataaatt
tttgcttagccaCCTGAacacgtcatctggcaggtgaccaggtggcaaaa
tttggtgttactgttcaAAATTAggtttagaccctctaaggatcatctgt
gccaaatttcatgctttaatcaccatctgaagtatttttgtgctaacaga
cctcactattaTGTTGGATGCTATAATAGAGAcctttaaaattaattatt
tctagGTTGACCGTAAATCTtccaaaatcataaaaataaatgtttacacA
CCAGTGAACGCAATAAGTGCTAAAAACAGTAAAAGAATCAATATCATACG
TAATCGATTAATCGCCCTTCTAGCAAATCACAAgaatgactcctttataa
ctgctcTAATTAAAACAAACCCTCCCGAATCTCTTCCTGATTATCCGGTG
AAATATATATGGGAAAAATATTCCAGAAAAGTATtgagaatcttagtgcg
gaaatgggaatatCATACAAAATAACGGTACCCctggagtttttaatgat
tcaaaatgaaaatcctgattagcaaaagggGTATCAAGAttggtgaagtt
tgattgaagctaaATTAGTttgttgcccattctttttacactCTGACGGT
ATATGAGCAGACACCAACGCTAACGCTTGAAGAGCgggccaatatctatc
atcccatcggccaagcgatgtcaatcgaactgttcgattaccaAACCAAA
TCCAACAGTCACCGAACCAAGAAATTCCGGTAAagttcaattagtttgat
tgatgttcgatgtGTTTATCAAACACCTAtcgtttgattgcgttcgatga
aatttgatggttcgattaccaaaatcggtttgatagggttcggttaACAT
CGCCGTCtggcatcggggaggaaaagctggaacttttcttaatccaaact
cgtcgaacaccaatcaaacttcatcagataaacaactgtcatcaaactta
tatAATCAAACTAATAAAAAAATTGTCTTACCAAATTAGGCTAGGTACTC
GAACAGATATCGTTTGATTTCGTTGGATAGGTCGACAGTTCGATTACGAA
AATTATTCAAAAGgtcaattgacatgatttctgGGAGcagactgtttgtc
acaactggttaacatttaacacataactatctggtgaaaaaaaggaaaaa
aatatcatacctgtgctgtttgtagttttagtGAAGAAGACGGTTATGTG
TTGTTGTTGTGTAAAATTAACTatttttgtactacttactgagGATTATC
AATTTATtagtgcattcactaactacacaaacataaaatgcTTGTACTAA
ACGAATAACAAACCTCTTTAAATAGTCTACAAAAGACAAGAAAACATGAT
TAAATTAATAcagtttcaaaagcatgtgcaatcaagcagccattaaaaag
ttctcatgatgaagatgaatgtttacaaaggcttggttacacttcttaca
ctagcgtattttaattattaagaaaagcgctgtttttatctttgttttat
attggccgtagtacgcccgcagtcAAACACCCACACCATAACTTCCGCCC
AAAAGATTTTCTCACCACACACatagaaaggctatcgtaataatTTCGat
atgcgaaattaataagcTACTATAAAAGATCTTCTCACAACTTCTTTCCT
CGTTCTTTATTCAGGATGGCACAGGTTGACAAAGCCGTGACTGGTATTGT
CTCGCAGCAAGATGAATTCTTAACCATGATGCAACCCTTTGATCAAATGT
CAGCTAAACTATCAGGTGCTCCAATGGCTATCAATATTCTTGGTCAACTG
TGTTATATCGCGACAGGAGTTGAAGTGGATTTGAGAGTTGAAGGAGTTAA
TGAGAAATACAAGCATTTAACTAATACAAATTCATTGCGTGCTTGTCTTA
TGCAAGTTTCACAAGCTGGGCAAAGAGCCTTTCGAACAGCCGATGGAAAT
ATGGAATACATATCAATGAGCTGCGAAAGGGTAATTACAgatttataaaa
agttttcttattttgtcTTATATGAATTCAAAAGAAGTTTATCACTCGCT
CGATAACAAGTACTCTTGAATGCTTTTACAAAGCATCCCATAAAAACCCC
ACGGTCGGTCCGATTTTTCTGCTACTTTTTGTTTACTTATGTTTTGGCAC
AGTAGtactactctaaggtcccgaatagacgtcccccccccgcttattaa
ttttcgaaaatatttcggacccccccgttcttattaggacccccccgttt
attagtttttaagaatattttcagctgtcaaagaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aaaaatttcggaccccccccccttttattcagacccccctactattcggg
accttagagtactATAAAGTCTCCTGATTTCATCTGTATACTTTCTGTAA
AAAACGGGTGCTTTTCGACTCCATCACCATATAGACGATTTACTTTTTGG
TGGAAGTGTTTTATTAGTTGCAATTATTCTATAAATTTTCTCCGAAAATG
TTAACGAAGTTAGTAGCAAGATTTCAACTCATAACAAATTTAATTCAATA
TTTGAAATGAAGATTCTCACGTATTGTTTTTGTTGGATTCGCTAGTTGTC
ATGGATGCTTTTGTTCTCCGAAATGTTAAACCCACGGTATCCCACAGCGc
ttttcgtgattgcgtgacgGAAGGATTTTCTGACGTGACGACGAATATTG
ATAAGTACTTCTgtaccaaaaatgaagtctcGTCAAGCAAAGGATAATAT
TTCCAAAAGTAGTTTGTAATCTATTCTTCAAATGTCATATTACAAGGATT
ATCTTTGCAATCTtgtaaaaaagttcttaaaattgaaacaatcagTAAAA
ATTGACAAGTAAAATACAAACAACAAACTTAAAGCGaaaaggcttaaaac
tcaatatTTGATTAAAACCTTAGCAAAGGTAATCCTTTAAGCTTGATTTT
AACACCATAGGTACCTGGATTAATGAGATCTGCATTGGGCATTCTGTTGT
CTCCAACATCGGAACCTTCAGACATTAAGAATTTTCTTCCTGAAAGACTT
CTGgcaatcaaaaaagtttccGACGATGCCAAGAG

Coding sequence (CDS) from alignment at scaffold_333:390567..413651+

>TCONS_00060016 ID=TCONS_00060016|Name=TCONS_00060016|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_333:390567..413651+ (Clytia hemisphaerica)
ATGGCACAGGTTGACAAAGCCGTGACTGGTATTGTCTCGCAGCAAGATGA
ATTCTTAACCATGATGCAACCCTTTGATCAAATGTCAGCTAAACTATCAG
GTGCTCCAATGGCTATCAATATTCTTGGTCAACTGTGTTATATCGCGACA
GGAGTTGAAGTGGATTTGAGAGTTGAAGGAGTTAATGAGAAATACAAGCA
TTTAACTAATACAAATTCATTGCGTGCTTGTCTTATGCAAGTTTCACAAG
CTGGGCAAAGAGCCTTTCGAACAGCCGATGGAAATATGGAATACATATCA
ATGAGCTGCGAAAGGGTACCTGGATTAATGAGATCTGCATTGGGCATTCT
GTTGTCTCCAACATCGGAACCTTCAGACATTAAGAATTTTCTTCCTGAAA
GACTTCTGgcaatcaaaaaagtttccGACGATGCCAAGATGGCACAGGTT
GACAAAGCCGTGACTGGTATTGTCTCGCAGCAAGATGAATTCTTAACCAT
GATGCAACCCTTTGATCAAATGTCAGCTAAACTATCAGGTGCTCCAATGG
CTATCAATATTCTTGGTCAACTGTGTTATATCGCGACAGGAGTTGAAGTG
GATTTGAGAGTTGAAGGAGTTAATGAGAAATACAAGCATTTAACTAATAC
AAATTCATTGCGTGCTTGTCTTATGCAAGTTTCACAAGCTGGGCAAAGAG
CCTTTCGAACAGCCGATGGAAATATGGAATACATATCAATGAGCTGCGAA
AGGGTACCTGGATTAATGAGATCTGCATTGGGCATTCTGTTGTCTCCAAC
ATCGGAACCTTCAGACATTAAGAATTTTCTTCCTGAAAGACTTCTGgcaa
tcaaaaaagtttccGACGATGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037766XLOC_037766Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060016-proteinTCONS_00060016-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060016-exon-scaffold_333-1491911889:390567..390736TCONS_00060016-exon-scaffold_333-1491911889:390567..390736Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1510915933:390567..390736TCONS_00060016-exon-scaffold_333-1510915933:390567..390736Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1575043694:390567..390736TCONS_00060016-exon-scaffold_333-1575043694:390567..390736Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1491911889:411681..411996TCONS_00060016-exon-scaffold_333-1491911889:411681..411996Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1510915933:411681..411996TCONS_00060016-exon-scaffold_333-1510915933:411681..411996Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1575043694:411681..411996TCONS_00060016-exon-scaffold_333-1575043694:411681..411996Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1491911889:413527..413651TCONS_00060016-exon-scaffold_333-1491911889:413527..413651Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1510915933:413527..413651TCONS_00060016-exon-scaffold_333-1510915933:413527..413651Clytia hemisphaericaexon
TCONS_00060016-exon-scaffold_333-1575043694:413527..413651TCONS_00060016-exon-scaffold_333-1575043694:413527..413651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:390567..413651 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.176506	0.025163	0.0999247	0.0977607	0.595071	0	0.113463	0.106223	1.78088	3.59261	1.16236	0.874106	2.90628	3.42596	19.5884	38.282	292.324	216.514	43.1379	42.8923	692.974	716.305	35.8329	74.896	126.627	116.939	83.8992	63.1284	2.74274	1.51891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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