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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060011 ID=TCONS_00060011|Name=TCONS_00060011|organism=Clytia hemisphaerica|type=transcript|length=1307bp
aaaaaaatggaacTAGCAGATGAATTTTTCAGCATGATTgtaacagaaaa
tgttttttctttgctttcagTGTAGAAACATACAAACATCTTAAACAcat
gaatttgaaaatgaattttaatagttcgaagatttttgaaaataatgact
TTGTTTGTGACTATCTTTTGTCATTGAGTCATATTTCTACCTTAAATGGG
AAGCTTGATTTGACTGCTTATGTAGTAATGTTTGTCTTTGCAACTGCTGC
AAATGTCATCTTAATCCATAGCATGATTAAAACGAAGGAAACCAGAACTA
ATACAGCAAAGCTGTTTCTCGTGATGGCAATAACAGATCTAACAATCTGT
ATCATCTTACCATTCGTCCATGAATTTAACATCCATTTCGACACTGGAAA
ATATACCTGCACAACATATGGTGTAGAACAGTTCTTCATTTGTTTTCTTG
GCTGCTCGTCAACTATCTTCACCTTTTTCATAACTTTGGATAGATTCTTG
TTCATCAGAAAGTCACAGTGGCACCAACAGATGAATGATACATACCCAAT
TGTGATGATTATGTTGGTTTTCACATACATTGTGTCAACTGGTACAGGCA
TTGCTATATTTATGCTGATTTATAGACACTTACATGAACAAATTTCAAAA
CCTTCTGTTGTATTCTTCAGTGCACTTTTAGTTCTTTATGTATTTGTATT
GATTGCTGAATTAACAATAAACATTTCACTGATTGTTTACATTCGAAAGC
AAGCAAAGCAACTTCGAAATATCACCAATTGCCAAACTTCGAATAACAGA
CATAAAAAGGCAACAAAAACTGTACTCATGATATCGTTTATTCAGATAAT
AACAACACTTCCACCTGTTCACGCATTTATTAATGTTATCATTGTTTTTG
CAAGAGAGGAACATGACAAACACATGTCTAGGATCTATTACATGACGACT
TGGCTTAACATACCGATCATCTTAAGCTCTTTAATGAATGCTATAGTGTT
TGTTCATAGAAACGACAAGCTAAAAACATTCTACAagcaaaagatttcaa
aacataAGGCAGCATTGATTTCATGGACTGGCGGATTGTCTGAACCGGAC
TCAGTTCCAACCGACAATTCTACTGCTTTAAATGAGCTTTGACGTATATG
AGCGAAATTTATCAAGTATTTTGATGATGCTGTGCTATAGTGCGAACGAA
TTATGAAAAGAAAACGATATTTGATTGTTGATGACAAGAGAAAAAACTAC
TCAAATTTCAAGACGCATCATCATGGTTCAAATTTCTCcgatccccactg
aattttt Run BLAST on NCBI protein sequence of TCONS_00060011-protein >TCONS_00060011-protein ID=TCONS_00060011-protein|Name=TCONS_00060011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MNLKMNFNSSKIFENNDFVCDYLLSLSHISTLNGKLDLTAYVVMFVFATA
ANVILIHSMIKTKETRTNTAKLFLVMAITDLTICIILPFVHEFNIHFDTG
KYTCTTYGVEQFFICFLGCSSTIFTFFITLDRFLFIRKSQWHQQMNDTYP
IVMIMLVFTYIVSTGTGIAIFMLIYRHLHEQISKPSVVFFSALLVLYVFV
LIAELTINISLIVYIRKQAKQLRNITNCQTSNNRHKKATKTVLMISFIQI
ITTLPPVHAFINVIIVFAREEHDKHMSRIYYMTTWLNIPIILSSLMNAIV
FVHRNDKLKTFYKQKISKHKAALISWTGGLSEPDSVPTDNSTALNEL Run BLAST on NCBI transcript from alignment at scaffold_333:335636..337339+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060011 ID=TCONS_00060011|Name=TCONS_00060011|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at scaffold_333:335636..337339+ (Clytia hemisphaerica)
aaaaaaatggaacTAGCAGATGAATTTTTCAGCATGATTgtaacagaaaa
tgttttttctttgctttcagTGTAGAAACATACAAACATCTTAAACAcat
gaatttgaaaatgaattttaatagttcgaagatttttgaaaataatgact
TTGTTTGTGACTATCTTTTGTCATTGAGTCATATTTCTACCTTAAATGGG
AAGCTTGATTTGACTGCTTATGTAGTAATGTTTGTCTTTGCAACTGCTGC
AAATGTCATCTTAATCCATAGCATGATTAAAACGAAGGAAACCAGAACTA
ATACAGCAAAGTAAGTTATCCTTTTATTTACGATGgtaaagtacacgttt
ttttataagaacatcaaaatttttgaagccttccgatgttcttaactttt
tgagtttcaagtctaaagatgttcttaacatgttcttaacttaaACCATC
CAACTTCATTCCTACTGAGAAATAGACTttgaaatttaatggaaaagatt
tcactccaaaaccaccccGACTGGATATTTTTGTAAGACCAATAGAATTT
CTGTCcacattgggatttcgatagaagtTTCCATCCACATCGGGGCTGTG
ATAGAGGGCAGtatgaataaagaaaacaaaacaattcagcaaagagacaa
aggagaaggATCAGTTGCAATTAAAGTATTTAATTTCAACTTCATCTTCT
ATCATAGGCTGTTTCTCGTGATGGCAATAACAGATCTAACAATCTGTATC
ATCTTACCATTCGTCCATGAATTTAACATCCATTTCGACACTGGAAAATA
TACCTGCACAACATATGGTGTAGAACAGTTCTTCATTTGTTTTCTTGGCT
GCTCGTCAACTATCTTCACCTTTTTCATAACTTTGGATAGATTCTTGTTC
ATCAGAAAGTCACAGTGGCACCAACAGATGAATGATACATACCCAATTGT
GATGATTATGTTGGTTTTCACATACATTGTGTCAACTGGTACAGGCATTG
CTATATTTATGCTGATTTATAGACACTTACATGAACAAATTTCAAAACCT
TCTGTTGTATTCTTCAGTGCACTTTTAGTTCTTTATGTATTTGTATTGAT
TGCTGAATTAACAATAAACATTTCACTGATTGTTTACATTCGAAAGCAAG
CAAAGCAACTTCGAAATATCACCAATTGCCAAACTTCGAATAACAGACAT
AAAAAGGCAACAAAAACTGTACTCATGATATCGTTTATTCAGATAATAAC
AACACTTCCACCTGTTCACGCATTTATTAATGTTATCATTGTTTTTGCAA
GAGAGGAACATGACAAACACATGTCTAGGATCTATTACATGACGACTTGG
CTTAACATACCGATCATCTTAAGCTCTTTAATGAATGCTATAGTGTTTGT
TCATAGAAACGACAAGCTAAAAACATTCTACAagcaaaagatttcaaaac
ataAGGCAGCATTGATTTCATGGACTGGCGGATTGTCTGAACCGGACTCA
GTTCCAACCGACAATTCTACTGCTTTAAATGAGCTTTGACGTATATGAGC
GAAATTTATCAAGTATTTTGATGATGCTGTGCTATAGTGCGAACGAATTA
TGAAAAGAAAACGATATTTGATTGTTGATGACAAGAGAAAAAACTACTCA
AATTTCAAGACGCATCATCATGGTTCAAATTTCTCcgatccccactgaat
tttt Coding sequence (CDS) from alignment at scaffold_333:335636..337339+ >TCONS_00060011 ID=TCONS_00060011|Name=TCONS_00060011|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_333:335636..337339+ (Clytia hemisphaerica)
atgaatttgaaaatgaattttaatagttcgaagatttttgaaaataatga
ctTTGTTTGTGACTATCTTTTGTCATTGAGTCATATTTCTACCTTAAATG
GGAAGCTTGATTTGACTGCTTATGTAGTAATGTTTGTCTTTGCAACTGCT
GCAAATGTCATCTTAATCCATAGCATGATTAAAACGAAGGAAACCAGAAC
TAATACAGCAAAGCTGTTTCTCGTGATGGCAATAACAGATCTAACAATCT
GTATCATCTTACCATTCGTCCATGAATTTAACATCCATTTCGACACTGGA
AAATATACCTGCACAACATATGGTGTAGAACAGTTCTTCATTTGTTTTCT
TGGCTGCTCGTCAACTATCTTCACCTTTTTCATAACTTTGGATAGATTCT
TGTTCATCAGAAAGTCACAGTGGCACCAACAGATGAATGATACATACCCA
ATTGTGATGATTATGTTGGTTTTCACATACATTGTGTCAACTGGTACAGG
CATTGCTATATTTATGCTGATTTATAGACACTTACATGAACAAATTTCAA
AACCTTCTGTTGTATTCTTCAGTGCACTTTTAGTTCTTTATGTATTTGTA
TTGATTGCTGAATTAACAATAAACATTTCACTGATTGTTTACATTCGAAA
GCAAGCAAAGCAACTTCGAAATATCACCAATTGCCAAACTTCGAATAACA
GACATAAAAAGGCAACAAAAACTGTACTCATGATATCGTTTATTCAGATA
ATAACAACACTTCCACCTGTTCACGCATTTATTAATGTTATCATTGTTTT
TGCAAGAGAGGAACATGACAAACACATGTCTAGGATCTATTACATGACGA
CTTGGCTTAACATACCGATCATCTTAAGCTCTTTAATGAATGCTATAGTG
TTTGTTCATAGAAACGACAAGCTAAAAACATTCTACAagcaaaagatttc
aaaacataAGGCAGCATTGATTTCATGGACTGGCGGATTGTCTGAACCGG
ACTCAGTTCCAACCGACAATTCTACTGCTTTAAATGAGCTTTGAatgaat
ttgaaaatgaattttaatagttcgaagatttttgaaaataatgactTTGT
TTGTGACTATCTTTTGTCATTGAGTCATATTTCTACCTTAAATGGGAAGC
TTGATTTGACTGCTTATGTAGTAATGTTTGTCTTTGCAACTGCTGCAAAT
GTCATCTTAATCCATAGCATGATTAAAACGAAGGAAACCAGAACTAATAC
AGCAAAGCTGTTTCTCGTGATGGCAATAACAGATCTAACAATCTGTATCA
TCTTACCATTCGTCCATGAATTTAACATCCATTTCGACACTGGAAAATAT
ACCTGCACAACATATGGTGTAGAACAGTTCTTCATTTGTTTTCTTGGCTG
CTCGTCAACTATCTTCACCTTTTTCATAACTTTGGATAGATTCTTGTTCA
TCAGAAAGTCACAGTGGCACCAACAGATGAATGATACATACCCAATTGTG
ATGATTATGTTGGTTTTCACATACATTGTGTCAACTGGTACAGGCATTGC
TATATTTATGCTGATTTATAGACACTTACATGAACAAATTTCAAAACCTT
CTGTTGTATTCTTCAGTGCACTTTTAGTTCTTTATGTATTTGTATTGATT
GCTGAATTAACAATAAACATTTCACTGATTGTTTACATTCGAAAGCAAGC
AAAGCAACTTCGAAATATCACCAATTGCCAAACTTCGAATAACAGACATA
AAAAGGCAACAAAAACTGTACTCATGATATCGTTTATTCAGATAATAACA
ACACTTCCACCTGTTCACGCATTTATTAATGTTATCATTGTTTTTGCAAG
AGAGGAACATGACAAACACATGTCTAGGATCTATTACATGACGACTTGGC
TTAACATACCGATCATCTTAAGCTCTTTAATGAATGCTATAGTGTTTGTT
CATAGAAACGACAAGCTAAAAACATTCTACAagcaaaagatttcaaaaca
taAGGCAGCATTGATTTCATGGACTGGCGGATTGTCTGAACCGGACTCAG
TTCCAACCGACAATTCTACTGCTTTAAATGAGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060011-exon-scaffold_333-1491911889:335636..335945 | TCONS_00060011-exon-scaffold_333-1491911889:335636..335945 | Clytia hemisphaerica | exon |
| TCONS_00060011-exon-scaffold_333-1510915933:335636..335945 | TCONS_00060011-exon-scaffold_333-1510915933:335636..335945 | Clytia hemisphaerica | exon |
| TCONS_00060011-exon-scaffold_333-1575043694:335636..335945 | TCONS_00060011-exon-scaffold_333-1575043694:335636..335945 | Clytia hemisphaerica | exon |
| TCONS_00060011-exon-scaffold_333-1491911889:336343..337339 | TCONS_00060011-exon-scaffold_333-1491911889:336343..337339 | Clytia hemisphaerica | exon |
| TCONS_00060011-exon-scaffold_333-1510915933:336343..337339 | TCONS_00060011-exon-scaffold_333-1510915933:336343..337339 | Clytia hemisphaerica | exon |
| TCONS_00060011-exon-scaffold_333-1575043694:336343..337339 | TCONS_00060011-exon-scaffold_333-1575043694:336343..337339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:335636..337339 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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