TCONS_00060009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060009
Unique NameTCONS_00060009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060009 ID=TCONS_00060009|Name=TCONS_00060009|organism=Clytia hemisphaerica|type=transcript|length=382bp
ACCACTTCCTATTTGGTGCATAATCAATATACTTATTTCCGTTTGTTTGC
TCTGGTTGAATCCATCCCCTAAAACATGGGCCAAATACTCTCCCAAAGAT
GCCATCCattttctctgttttttttgtttttttttgtttactttcgattt
cttcCTTCTTGTTTACTTTACAGCCATAACTTTCAAGCTATCAATCCTTC
GTAGGAAGTAAAATAAATATTCTGAGCCTGATTTAATTTCTGCAGTTTAT
GATCTAATTTCTTGTTTGGTCTTGtggttttaaagaaaatcgtcttcgat
ttctcaaaaatgaatCATTTTCGgcgccgccatcttgaaaacaAGCTACT
ATTATTTTTATACCCCTTTCCACATgtcctca
Run BLAST on NCBI

transcript from alignment at scaffold_333:299550..300084+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060009 ID=TCONS_00060009|Name=TCONS_00060009|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at scaffold_333:299550..300084+ (Clytia hemisphaerica)
ACCACTTCCTATTTGGTGCATAATCAATATACTTATTTCCGTTTGTTTGC
TCTGGTTGAATCCATCCCCTAAAACATGGGCCAAATACTCTCCCAAAGAT
GCCATCCattttctctgttttttttgtttttttttgtttactttcgattt
cttcCTTCTTGTTTACTTTACAGCCATAACTTTCAAGCTATCAATCCTTC
Ntcgcaaatttcgagtcccacgtagggtccatttttcgaacctcagcgga
gcacccccgtcggtcgacaagggtagtaccccccccgggagaAAATCGTC
ttcgatttctcaaaaatgaatCATTTTCGgcgccgccatcttgaaaacaA
ANCGTAGGAAGTAAAATAAATATTCTGAGCCTGATTTAATTTCTGCAGTT
TATGATCTAATTTCTTGTTTGGTCTTGtggttttaaagaaaatcgtcttc
gatttctcaaaaatgaatCATTTTCGgcgccgccatcttgaaaacaAGCT
ACTATTATTTTTATACCCCTTTCCACATgtcctca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037761XLOC_037761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060009-exon-scaffold_333-1491911889:299550..299749TCONS_00060009-exon-scaffold_333-1491911889:299550..299749Clytia hemisphaericaexon
TCONS_00060009-exon-scaffold_333-1510915933:299550..299749TCONS_00060009-exon-scaffold_333-1510915933:299550..299749Clytia hemisphaericaexon
TCONS_00060009-exon-scaffold_333-1575043694:299550..299749TCONS_00060009-exon-scaffold_333-1575043694:299550..299749Clytia hemisphaericaexon
TCONS_00060009-exon-scaffold_333-1491911889:299903..300084TCONS_00060009-exon-scaffold_333-1491911889:299903..300084Clytia hemisphaericaexon
TCONS_00060009-exon-scaffold_333-1510915933:299903..300084TCONS_00060009-exon-scaffold_333-1510915933:299903..300084Clytia hemisphaericaexon
TCONS_00060009-exon-scaffold_333-1575043694:299903..300084TCONS_00060009-exon-scaffold_333-1575043694:299903..300084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:299550..300084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9218	18.9072	15.3574	26.0399	83.3438	60.537	56.3791	62.5052	13.3773	15.1012	11.115	7.51772	4.67079	4.43669	1.59272	1.90037	2.35131	1.91486	3.59394	3.7141	7.05308	2.77965	9.39499	8.1363	9.58187	21.3773	6.73555	4.86525	2.69066	1.6323
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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