TCONS_00060006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060006
Unique NameTCONS_00060006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060006 ID=TCONS_00060006|Name=TCONS_00060006|organism=Clytia hemisphaerica|type=transcript|length=1318bp
AAAGAATGGTCTGGTGGTTCTGTTTGAGTTTCTTGTTCGGTAGAGCAGCA
TGTTTTATAGACCAGGACGTTCACCATCAAAGAAGAGCGGGACATCATTC
GAATTATGAAGTACATCATCACATggggaaaatgaaaatccaCACCAATC
CAGACGGAGCAGATTTCGACTTCAGTGGCGGTGATTTACATGTTGACCTA
CATCCAGCACATAGTGATGTTTTTCCAATCTACAATTATTTTCATAGCGA
TTACCATGACGACCATCATGAAGAGCAAGAAGAAGAAGGCCACCATTTTG
AACCGTTTCACGAAATGCATCATGGATCTGGTGATCATCATCACAGCATG
ACGAGGCACCACATGCCAGAGCACGGTTATGGAGAAAACGAGCAAGGTGG
TTCACGAATGATGAGTCACGACAACGGAGGGAACCATGCAATAATATCTC
ACGAAGGAAGCCATCACGGAATGTCTCATGGTCATCACGGGATGTCTCAT
AGTCATGGGCATCACGGAATGTCTCACGGTCACGGACATCACGATGAAGA
GGAAATAGCAGCCGATCACGGTCATGAACACATGCCACATTTATTTCCAA
TTGGTATGCATCACCCAGGCATGCATGGAGGACACCACCACGGTCACCAC
GGTTTCCAGGGTAACGAACGGGGCCACCATTATGGTCATTCAGGTTCAAT
GCATAGACATGATTTTCATCCAGGTCACGTCGGCCATCATGGCTCACATC
ATGGTGGATGTTGTTCCCATGGCTACGGCAAAAACATTGTTCCTGGGCAA
CAAGATGATTCGTCAGCCACGAAGTCGAATTTTAATGTCAATAAACTGGT
ACCTAGTGATGCTTCCATGGGGATATTTCCAGCAGCAGCTTCCTTTGATG
GGAAGAAGCCAGTCCTCGATTTTGTAGCTGAGTCAGCAAATATTGAAATG
CGGAAACAACAGGGTGCTTTTTCTACGAGGGCGGTAACACCCGAGAAAAT
TGAATCATTTGTGGCAACACGCCCTGTTAACGAGCTGACGCCTAACGCGG
CACGACTAGAAAACGCTGTCAAAAGATCCATGGGTATATTACAGAGCACA
AGACAAAAACGGATGAAAGTTTACGGAAAACAGATCACTCCGGACATCGA
CGGAGATACGGAAACCATGCCAACAAGGCCAAACATCAGAAAGAAAGCGG
AAAGACGGACATTTTTACGACCAGTCAATTTCAAAGGATCCATTTTAGAT
TCGTACAAGAAGCATTGGGATGATGACGAAGATGACGAGAAAGATGAGAA
ACAGGAAGATGAAGATAC
Run BLAST on NCBI

transcript from alignment at scaffold_333:112481..115575+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060006 ID=TCONS_00060006|Name=TCONS_00060006|organism=Clytia hemisphaerica|type=transcript|length=3095bp|location=Sequence derived from alignment at scaffold_333:112481..115575+ (Clytia hemisphaerica)
AAAGAATGGTCTGGTGGTTCTGTTTGAGTTTCTTGTTCGGTAGAGCAGCA
TGTTTTATAGACCAGGACGTTCACCATCAAAGAAGAGCGGGACATCATTC
GAATTATGAAGTATGTAAAAGATGAAAATATATCTTAGCATGTggtcatt
gagtttcaagccccaaagggctagatttgaAACTCTTGTATCCCTGGGAA
ATGATCAATCCAAAATTCGTGACCCgcatggttttcacacaaacgcgtAA
AATCTTTGAATCACCAGATTTCGAAAATATGTTGTGTGAATAGAATTATT
GTGCTGTGATCCTCAGCCTCACTGAGGCCTAGTCCTATATTTTAGGAAGG
TATATATTattgaaaggttaaagattcctTCCTATCCCTTTGAGCTTTAA
AGTCAAATACTGCAAAGCACCGAATAACAACAATTATTTCTTAACAATTA
CCTGATTGATAAAACATCTTCCAATTTCAGGTACATCATCACATggggaa
aatgaaaatccaCACCAATCCAGACGGAGCAGATTTCGACTTCAGTGGCG
GTGATTTACATGTTGACCTACATCCAGCACATAGTGATGTTTTTCCAATC
TACAATTATTTTCATAGCGATTACCATGACGACCATCATGAAGAGCAAGA
AGAAGAAGGCCACCATTTTGAACCGTTTCACGAAATGCATCATGGATCTG
GTGATCATCATCACAGCATGACGAGGGTATGTCACTGATCTCCAAAATAT
CGTCTGGAAAAGTCTTCTCTATTTCTAAATGTTTAGAAAGGTCTTGGGAA
CTTTTCTTACCAAGTTCTGTAACAATTGCTATGGAAAAAGAACAAATTCC
TTCAGTTGTATACCTATGAACGCATCAATTATCAATACTAGACATAATGT
ATATCCCATACCACGAATTACACGCCCTTATTTTGGTATATCGAGTTTTA
TACGACACTGAAGTCTGAATATAACTGGGAGGGTTAAACATCgaaagata
ttttttgtttatttaaagaACTAACTACATAATCGAAAGAAGAAAAGAGA
TTCTCAGACAATCAGGGATCCATCAACAACAAAACCTTTCCAAAAACTCA
GTGCAAAAATGTCGTCAATGATAGGAAAGtataataaaatagaaatacac
tTTTTAACACCATATTCTCCACATTATAGCACCACATGCCAGAGCACGGT
TATGGAGAAAACGAGCAAGGTGGTTCACGAATGATGAGTCACGACAACGG
AGGGAACCATGCAATAATATCTCACGAAGGAAGCCATCACGGAATGTCTC
ATGGTCATCACGGGATGTCTCATAGTCATGGGCATCACGGAATGTCTCAC
GGTCACGGACATCACGATGAAGAGGAAATAGCAGCCGATCACGGTCATGA
ACACATGCCACATTTATTTCCAATTGGTATGCATCACCCAGGCATGCATG
GAGGTGAGTCTAAGGAAACACATCATCATAGCTTGAGCCTTATTTTACAT
TCGAAAAAAACCTGTTATTTGTAATTCAGTACTATTTCACATCTAACCAA
ATGTAGATAGATATCCCCCGAACACTTATTCTAATCTCTGATATTGAGAG
TAAAGTTTTGCCTCCTTAAACTTTTTACCAATCTATGAATTCCAAGATTT
ATTCTATGCTTTTTACTGTCCGGTAAAAAATAGACCTCTTTCTCTTTTCC
AATTTCGTGCTCATCATCAGGACACCACCACGGTCACCACGGTTTCCAGG
GTAACGAACGGGGCCACCATTATGGTCATTCAGGTTCAATGCATAGACAT
GATTTTCATCCAGGTCACGTCGGCCATCATGGCTCACATCATGGTGGATG
TTGTTCCCATGGCTACGGCAAAAACATTGTTCCTGGGCAACAAGATGATT
CGTCAGCCACGAAGTCGAATTTTAATGTCAATAAACTGGTACCTAGTGAT
GCTTCCATGGGGATATTTCCAGCAGCAGCTTCCTTTGATGGGAAGAAGCC
AGTCCTCGATTTTGTAGCTGAGTCAGCAAATATTGAAATGCGGAAACAAC
AGGGTGCTTTTTCTACGAGGGCGGTAACACCCGAGAAAATTGAATCATTT
GTGGCAACACGCCCTGTTAACGAGCTGACGCCTAACGCGGCACGACTAGA
AAACGCTGTCAAAAGATCCATGGGTATATTACAGAGCACAAGACAAAAAC
GGATGAAAGTTTACGGAAAACAGATCACTCCGGACATCGACGGAGATACG
GAAACCATGCCAACAAGGCCAAACATCAGAAAGAAAGCGGAAAGACGGAC
ATTTTTACGACCAGTCAATTTCAAAGGATCCATTTTAGATTCGTACAAGA
AGCATTGGGATGATGACGAAGATGGTAAGagcttcttttttcttctttga
aatGGCGCACAATCAAAAAGTTACCGTGTGATAGTTAAGAACACTCGAGA
CGATTGGttttgtgttatttttttcGGAATAAGTTTTCAACTCTGAGCAA
TATCTCAAAACGTATATCTTATCAAGGATTGAACTATCGTTTTTCCTCTG
AGACGGAAAATATACCCAACACGACATATATAGATTTTAAATAATTTGCT
GAATTTTGCTAAATTCTAAGGCAAAAAAGTCTCTATTTATACTTCGCAAA
GACGGAGATCTCTAAATAATATTGTGAAACGAGAATACAATTTTCAGAGA
GTTTATGATTTGAATTCAATTGAAATATTTGTAGACGAGAAAGATGAGAA
ACAGGAAGATGAAGATACAGAGGAGGacgaattctttgaaaagaGACAAA
TGAGAAANTTTCGGAATAAGTTTTCAACTCTGAGCAATATCTCAAAACGT
ATATCTTATCAAGGATTGAACTATCGTTTTTACTCTGAGACGGAAAATAT
ACCTAACACGACATGTATACATTTCAAATAATTTGCTAAATTCTAAGGCA
AAAAAGTCTCTATTTATACTTCGCAGAGACCGAGATCTCTAAATAATATT
GTGAAACGAGAATACAATTTTCAGAGAGTTTATGATTTGAATTCAATTGA
AATATTTGTAGACGAGAAAGATGAGAAACAGGAAGATGAAGATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037758XLOC_037758Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060006-exon-scaffold_333-1491911889:112481..112590TCONS_00060006-exon-scaffold_333-1491911889:112481..112590Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1510915933:112481..112590TCONS_00060006-exon-scaffold_333-1510915933:112481..112590Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1575043694:112481..112590TCONS_00060006-exon-scaffold_333-1575043694:112481..112590Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1491911889:112961..113206TCONS_00060006-exon-scaffold_333-1491911889:112961..113206Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1510915933:112961..113206TCONS_00060006-exon-scaffold_333-1510915933:112961..113206Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1575043694:112961..113206TCONS_00060006-exon-scaffold_333-1575043694:112961..113206Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1491911889:113660..113933TCONS_00060006-exon-scaffold_333-1491911889:113660..113933Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1510915933:113660..113933TCONS_00060006-exon-scaffold_333-1510915933:113660..113933Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1575043694:113660..113933TCONS_00060006-exon-scaffold_333-1575043694:113660..113933Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1491911889:114201..114854TCONS_00060006-exon-scaffold_333-1491911889:114201..114854Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1510915933:114201..114854TCONS_00060006-exon-scaffold_333-1510915933:114201..114854Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1575043694:114201..114854TCONS_00060006-exon-scaffold_333-1575043694:114201..114854Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1491911889:115542..115575TCONS_00060006-exon-scaffold_333-1491911889:115542..115575Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1510915933:115542..115575TCONS_00060006-exon-scaffold_333-1510915933:115542..115575Clytia hemisphaericaexon
TCONS_00060006-exon-scaffold_333-1575043694:115542..115575TCONS_00060006-exon-scaffold_333-1575043694:115542..115575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:112481..115575 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0591589	0.0404187	0.170489	0.0275213	0	0	1.60228	1.72793	0.190306	0.402875	0.673674	0.334606	1.53315	1.41999	0.674228	1.98848	0.585557	0.416202	0.285263	0.459951	0.258833	0.208333	0.0951221	0.33774	0.698943	0.978017	0.229254	0.00627457	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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