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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059999 ID=TCONS_00059999|Name=TCONS_00059999|organism=Clytia hemisphaerica|type=transcript|length=1107bpRun BLAST on NCBI protein sequence of TCONS_00059999-protein >TCONS_00059999-protein ID=TCONS_00059999-protein|Name=TCONS_00059999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp MELSLSKEMTCKKLWDAIVITCSDHDHAMAFEKECSIRQKNFFIHPKTTVRun BLAST on NCBI transcript from alignment at scaffold_332:12528..29654+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059999 ID=TCONS_00059999|Name=TCONS_00059999|organism=Clytia hemisphaerica|type=transcript|length=17127bp|location=Sequence derived from alignment at scaffold_332:12528..29654+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_332:12528..29654+ >TCONS_00059999 ID=TCONS_00059999|Name=TCONS_00059999|organism=Clytia hemisphaerica|type=CDS|length=7668bp|location=Sequence derived from alignment at scaffold_332:12528..29654+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059999 vs. Swiss-Prot (Human)
Match: FUK (L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 1.091e-49 Identity = 101/259 (39.00%), Postives = 138/259 (53.28%), Query Frame = 1
Query: 298 WDAIVITCSDHDHAMAFEKECSIRQKNFFIHPKTTVLSVVDPVPNIGSGGATINAMIHVTEYISALEGHTVITSDVLYSKKILILHMGTMTPYSACSSGFLPAPALLTCHDNNNQAVVSGATQLDVLLQMTMNKLASDSPPGFWICSCDRLINLPKEINIDWSEEDDVYLFTVPVNMETAANKHGVVKYNENELTIDDIIYKGSTERISVCKMKDEKVPIISGVVFLSTNFIEALLNVSIFHPLVLWTYLGVDSGSDNV 1074
W I++TC D F++E +RQK I T +L+V DP +GSGGAT+NA++ E++SA G TV+TSDVL+S ILILHMG P+ C F P +N V + LD LL + +L SPPG W+CS D L+++P I W + +P + A N HGV + L + DI Y+G+ I C D +VP++SGVVF S E LL + PL TYLG+DSG+ V
Sbjct: 9 WTVIILTCQYKDSVQVFQRELEVRQKREQIPAGTLLLAVEDPEKRVGSGGATLNALLVAAEHLSARAGFTVVTSDVLHSAWILILHMGRDFPFDDCGRAFTCLPV-----ENPEAPVEALVCNLDCLLDIMTYRLGPGSPPGVWVCSTDMLLSVPANPGISWDSFRGARVIALPGSPAYAQN-HGVYLTDPQGLVL-DIYYQGTEAEIQRCVRPDGRVPLVSGVVFFSVETAERLLATHVSPPLDACTYLGLDSGARPV 260 The following BLAST results are available for this feature:
BLAST of TCONS_00059999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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