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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059998 ID=TCONS_00059998|Name=TCONS_00059998|organism=Clytia hemisphaerica|type=transcript|length=2284bp
tgatcatcaaaaacagcacTATACTGTTCAAAAAGTTCTGGATTCTTTCC
AATACGATTGTGTAACGAGTCTAAGCGTTTCTTGCTCAATGAATAATGGT
CGGGTAGCGAAGATTGCGAATCTTTGAACGGAAGTTTTACGATAAACCTT
CCTTCAGCAAAATCGATCTCGTCGTTAAACTTGTCATAAACGGAGCGTTC
ATTCTCCTTGATACCGATAGTTTCTAAGTCCCAAAAGTTTTTCACTTCCT
CTGACAGGAGTTTATCTTCACGAGTTTCACAGACAATTTTCATAACGTGG
GTTGACACAACATTGGTACTACTTTCTGGAAATTTCATTGGGCCACTCAA
AACGTACCCAAATAACGATTTCAATAAAGTCAATCCACTTTTATCTTTCT
TAACATCACCTGTCATAAGCTCCCAATAATAATCTCCTCCTATCAATACG
TCAATAGATTTCTCCACAGTTTTGTCATTCTCAGCAAGGGTATATTGCTT
CAAATGCGGAAATTTCTCTAAAACAGTTCCTATATCTTGTCCGCTGACGG
GGGCACAGATTGTTGGTACAGCAAAAGCTTTGATTTTGACTGTGGAATCT
CCTTTCAAACTCAATTCATACTCTTTCACGGAGGAAATTTTCTCTTTCGA
CGAACCAAAAGTTTTTACACACATGTTTACTTTGCGAATGGGCGATAAAT
TCAAATCTTTAACAACTTTCTCAGTAATGTAGGTTTGCTGAGCACCGGAG
TCAAACAGTACACGAACTCCACGAGCTTTATTATCACTTTCTGCAATTCC
GTTGGCGGTTTGCAATAAAACAGTTCCTGAATCAtcaactaaattttgac
ttttctCAATAATAACAGCAGTTTGTAATTCTGTGAGGGAGAGTGTTTCA
TCATTTTTCTCCTCACTTTTCTCATCAGTTTTTTCTCCTTTTGTGTTTGT
TTGTTGACATAAAGCGGTAGGGTGATTCCCCGAGGTCCCACATTTGTAGC
ATTTGATCGTAGTTTTACACTCCTTTTTCGAGTGTCCCGGTTTCAAACAA
TTAAAACAACAATGGTTTTTCTTCAAAATTTCTCTGCGAGCACTATTTGT
CGTAACAATAGTACATTGATCACTGTAATGATCTGTGCTTTGGCAAAATC
TGCAAAACTTTTTTCTTTGTTGTGCACCTCCAAAGTTCATTGAGGAGCGT
TTTTTCGAATTCGAATTTTCTGCTTCGGGACCTTTCAAATAATCAAAGTT
TTCTCTTGCTAGAATTTCCTCATTAATAGCTTTCAAAAATTCAGTTATGT
CCCAAGTGTTACTTCCAAGAGTTCTACTGAGATGTAAACGAACGACATTT
GGTAATTTCTCTAAAACAATAGGTATCAACATCGGACCCAAAGTTTCTTT
CTCAATTCCGGTTGATTTTAAAGCACGGACGTTGCTTTCGACTGTGTCAT
ACAATTTTCGAAGTTCTTTAGCTGAGCCGTTACTTGGCTTTTCTAATTTA
ATCAGTTTATTCATAAGACTCGAACGGATGAGTTGCGAATTTCCATAACG
TTCAGTTAGGAGTTGCCAGGCTTTATCATAATTTTCTCCACTAAGTGGAA
GTCCTTGAATTGCTTGCTGAGCTTCATCTCGAACGTAACTTTGCAAATAC
GTGAATTTTTCAATGTCAGACAGTTTCGAATTTTCGTGGATGGTCGCAGT
AAACGTGTCTCTAAACGAATTCCATTCTAACGGGTCTCCTTTGAATTTCG
GGATTTCGATTTTCGGCAAGCGGACACCGTCGTTCTTTCTTTCGATGATC
GGTTGTTGTACTGTGGCAGCGATTGTACCCGTAGCGATCGGCGTGACGTT
TACGTTAGCGTAAGGTGCTTCAAGTTTTCGTTCTAATCGTTTAAGTTTTG
AAACGTACTTCTGTACTTTCAGTTCAAATTCAGTGTTGGCATTCAGTTCA
TCAGCCATTTCCTCGTCGTCAGACAGGAGTTCCAAAATTTTCTCGTCAAG
TTTTTTAATCGTGTCGTGCTTACTTTGTATCGTGATGATATTGCTATTCA
GTTCATCCATTACATCGTATCGTTGTGTTTCGGTGAGCGTATCAAAATTC
GGGTTGTCGAACTTGGCAAACAATTTACTAGCGTTCAGTCGGTAAGCGTT
TCTGCTTTTCTtcaatttggcaaggtcagccatattttcaaaatcaaatc
aataatcaCGTGTAATCAAAAttaatcaaatcaaatctcAAATATCTGCG
ATCGGTAACAaatccaaaatcaaatcaaaatttc Run BLAST on NCBI protein sequence of TCONS_00059998-protein >TCONS_00059998-protein ID=TCONS_00059998-protein|Name=TCONS_00059998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=727bp
MADLAKLKKSRNAYRLNASKLFAKFDNPNFDTLTETQRYDVMDELNSNII
TIQSKHDTIKKLDEKILELLSDDEEMADELNANTEFELKVQKYVSKLKRL
ERKLEAPYANVNVTPIATGTIAATVQQPIIERKNDGVRLPKIEIPKFKGD
PLEWNSFRDTFTATIHENSKLSDIEKFTYLQSYVRDEAQQAIQGLPLSGE
NYDKAWQLLTERYGNSQLIRSSLMNKLIKLEKPSNGSAKELRKLYDTVES
NVRALKSTGIEKETLGPMLIPIVLEKLPNVVRLHLSRTLGSNTWDITEFL
KAINEEILARENFDYLKGPEAENSNSKKRSSMNFGGAQQRKKFCRFCQST
DHYSDQCTIVTTNSARREILKKNHCCFNCLKPGHSKKECKTTIKCYKCGT
SGNHPTALCQQTNTKGEKTDEKSEEKNDETLSLTELQTAVIIEKSQNLVD
DSGTVLLQTANGIAESDNKARGVRVLFDSGAQQTYITEKVVKDLNLSPIR
KVNMCVKTFGSSKEKISSVKEYELSLKGDSTVKIKAFAVPTICAPVSGQD
IGTVLEKFPHLKQYTLAENDKTVEKSIDVLIGGDYYWELMTGDVKKDKSG
LTLLKSLFGYVLSGPMKFPESSTNVVSTHVMKIVCETREDKLLSEEVKNF
WDLETIGIKENERSVYDKFNDEIDFAEGRFIVKLPFKDSQSSLPDHYSLS
KKRLDSLHNRIGKNPELFEQYSAVFDD Run BLAST on NCBI transcript from alignment at scaffold_331:1340517..1342800 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059998 ID=TCONS_00059998|Name=TCONS_00059998|organism=Clytia hemisphaerica|type=transcript|length=2284bp|location=Sequence derived from alignment at scaffold_331:1340517..1342800 (Clytia hemisphaerica)
gaaattttgatttgattttggattTGTTACCGATCGCAGATATTTgagat
ttgatttgattaaTTTTGATTACACGtgattattgatttgattttgaaaa
tatggctgaccttgccaaattgaAGAAAAGCAGAAACGCTTACCGACTGA
ACGCTAGTAAATTGTTTGCCAAGTTCGACAACCCGAATTTTGATACGCTC
ACCGAAACACAACGATACGATGTAATGGATGAACTGAATAGCAATATCAT
CACGATACAAAGTAAGCACGACACGATTAAAAAACTTGACGAGAAAATTT
TGGAACTCCTGTCTGACGACGAGGAAATGGCTGATGAACTGAATGCCAAC
ACTGAATTTGAACTGAAAGTACAGAAGTACGTTTCAAAACTTAAACGATT
AGAACGAAAACTTGAAGCACCTTACGCTAACGTAAACGTCACGCCGATCG
CTACGGGTACAATCGCTGCCACAGTACAACAACCGATCATCGAAAGAAAG
AACGACGGTGTCCGCTTGCCGAAAATCGAAATCCCGAAATTCAAAGGAGA
CCCGTTAGAATGGAATTCGTTTAGAGACACGTTTACTGCGACCATCCACG
AAAATTCGAAACTGTCTGACATTGAAAAATTCACGTATTTGCAAAGTTAC
GTTCGAGATGAAGCTCAGCAAGCAATTCAAGGACTTCCACTTAGTGGAGA
AAATTATGATAAAGCCTGGCAACTCCTAACTGAACGTTATGGAAATTCGC
AACTCATCCGTTCGAGTCTTATGAATAAACTGATTAAATTAGAAAAGCCA
AGTAACGGCTCAGCTAAAGAACTTCGAAAATTGTATGACACAGTCGAAAG
CAACGTCCGTGCTTTAAAATCAACCGGAATTGAGAAAGAAACTTTGGGTC
CGATGTTGATACCTATTGTTTTAGAGAAATTACCAAATGTCGTTCGTTTA
CATCTCAGTAGAACTCTTGGAAGTAACACTTGGGACATAACTGAATTTTT
GAAAGCTATTAATGAGGAAATTCTAGCAAGAGAAAACTTTGATTATTTGA
AAGGTCCCGAAGCAGAAAATTCGAATTCGAAAAAACGCTCCTCAATGAAC
TTTGGAGGTGCACAACAAAGAAAAAAGTTTTGCAGATTTTGCCAAAGCAC
AGATCATTACAGTGATCAATGTACTATTGTTACGACAAATAGTGCTCGCA
GAGAAATTTTGAAGAAAAACCATTGTTGTTTTAATTGTTTGAAACCGGGA
CACTCGAAAAAGGAGTGTAAAACTACGATCAAATGCTACAAATGTGGGAC
CTCGGGGAATCACCCTACCGCTTTATGTCAACAAACAAACACAAAAGGAG
AAAAAACTGATGAGAAAAGTGAGGAGAAAAATGATGAAACACTCTCCCTC
ACAGAATTACAAACTGCTGTTATTATTGagaaaagtcaaaatttagttga
TGATTCAGGAACTGTTTTATTGCAAACCGCCAACGGAATTGCAGAAAGTG
ATAATAAAGCTCGTGGAGTTCGTGTACTGTTTGACTCCGGTGCTCAGCAA
ACCTACATTACTGAGAAAGTTGTTAAAGATTTGAATTTATCGCCCATTCG
CAAAGTAAACATGTGTGTAAAAACTTTTGGTTCGTCGAAAGAGAAAATTT
CCTCCGTGAAAGAGTATGAATTGAGTTTGAAAGGAGATTCCACAGTCAAA
ATCAAAGCTTTTGCTGTACCAACAATCTGTGCCCCCGTCAGCGGACAAGA
TATAGGAACTGTTTTAGAGAAATTTCCGCATTTGAAGCAATATACCCTTG
CTGAGAATGACAAAACTGTGGAGAAATCTATTGACGTATTGATAGGAGGA
GATTATTATTGGGAGCTTATGACAGGTGATGTTAAGAAAGATAAAAGTGG
ATTGACTTTATTGAAATCGTTATTTGGGTACGTTTTGAGTGGCCCAATGA
AATTTCCAGAAAGTAGTACCAATGTTGTGTCAACCCACGTTATGAAAATT
GTCTGTGAAACTCGTGAAGATAAACTCCTGTCAGAGGAAGTGAAAAACTT
TTGGGACTTAGAAACTATCGGTATCAAGGAGAATGAACGCTCCGTTTATG
ACAAGTTTAACGACGAGATCGATTTTGCTGAAGGAAGGTTTATCGTAAAA
CTTCCGTTCAAAGATTCGCAATCTTCGCTACCCGACCATTATTCATTGAG
CAAGAAACGCTTAGACTCGTTACACAATCGTATTGGAAAGAATCCAGAAC
TTTTTGAACAGTATAgtgctgtttttgatgatca Coding sequence (CDS) from alignment at scaffold_331:1340517..1342800 >TCONS_00059998 ID=TCONS_00059998|Name=TCONS_00059998|organism=Clytia hemisphaerica|type=CDS|length=2181bp|location=Sequence derived from alignment at scaffold_331:1340517..1342800 (Clytia hemisphaerica)
atggctgaccttgccaaattgaAGAAAAGCAGAAACGCTTACCGACTGAA
CGCTAGTAAATTGTTTGCCAAGTTCGACAACCCGAATTTTGATACGCTCA
CCGAAACACAACGATACGATGTAATGGATGAACTGAATAGCAATATCATC
ACGATACAAAGTAAGCACGACACGATTAAAAAACTTGACGAGAAAATTTT
GGAACTCCTGTCTGACGACGAGGAAATGGCTGATGAACTGAATGCCAACA
CTGAATTTGAACTGAAAGTACAGAAGTACGTTTCAAAACTTAAACGATTA
GAACGAAAACTTGAAGCACCTTACGCTAACGTAAACGTCACGCCGATCGC
TACGGGTACAATCGCTGCCACAGTACAACAACCGATCATCGAAAGAAAGA
ACGACGGTGTCCGCTTGCCGAAAATCGAAATCCCGAAATTCAAAGGAGAC
CCGTTAGAATGGAATTCGTTTAGAGACACGTTTACTGCGACCATCCACGA
AAATTCGAAACTGTCTGACATTGAAAAATTCACGTATTTGCAAAGTTACG
TTCGAGATGAAGCTCAGCAAGCAATTCAAGGACTTCCACTTAGTGGAGAA
AATTATGATAAAGCCTGGCAACTCCTAACTGAACGTTATGGAAATTCGCA
ACTCATCCGTTCGAGTCTTATGAATAAACTGATTAAATTAGAAAAGCCAA
GTAACGGCTCAGCTAAAGAACTTCGAAAATTGTATGACACAGTCGAAAGC
AACGTCCGTGCTTTAAAATCAACCGGAATTGAGAAAGAAACTTTGGGTCC
GATGTTGATACCTATTGTTTTAGAGAAATTACCAAATGTCGTTCGTTTAC
ATCTCAGTAGAACTCTTGGAAGTAACACTTGGGACATAACTGAATTTTTG
AAAGCTATTAATGAGGAAATTCTAGCAAGAGAAAACTTTGATTATTTGAA
AGGTCCCGAAGCAGAAAATTCGAATTCGAAAAAACGCTCCTCAATGAACT
TTGGAGGTGCACAACAAAGAAAAAAGTTTTGCAGATTTTGCCAAAGCACA
GATCATTACAGTGATCAATGTACTATTGTTACGACAAATAGTGCTCGCAG
AGAAATTTTGAAGAAAAACCATTGTTGTTTTAATTGTTTGAAACCGGGAC
ACTCGAAAAAGGAGTGTAAAACTACGATCAAATGCTACAAATGTGGGACC
TCGGGGAATCACCCTACCGCTTTATGTCAACAAACAAACACAAAAGGAGA
AAAAACTGATGAGAAAAGTGAGGAGAAAAATGATGAAACACTCTCCCTCA
CAGAATTACAAACTGCTGTTATTATTGagaaaagtcaaaatttagttgaT
GATTCAGGAACTGTTTTATTGCAAACCGCCAACGGAATTGCAGAAAGTGA
TAATAAAGCTCGTGGAGTTCGTGTACTGTTTGACTCCGGTGCTCAGCAAA
CCTACATTACTGAGAAAGTTGTTAAAGATTTGAATTTATCGCCCATTCGC
AAAGTAAACATGTGTGTAAAAACTTTTGGTTCGTCGAAAGAGAAAATTTC
CTCCGTGAAAGAGTATGAATTGAGTTTGAAAGGAGATTCCACAGTCAAAA
TCAAAGCTTTTGCTGTACCAACAATCTGTGCCCCCGTCAGCGGACAAGAT
ATAGGAACTGTTTTAGAGAAATTTCCGCATTTGAAGCAATATACCCTTGC
TGAGAATGACAAAACTGTGGAGAAATCTATTGACGTATTGATAGGAGGAG
ATTATTATTGGGAGCTTATGACAGGTGATGTTAAGAAAGATAAAAGTGGA
TTGACTTTATTGAAATCGTTATTTGGGTACGTTTTGAGTGGCCCAATGAA
ATTTCCAGAAAGTAGTACCAATGTTGTGTCAACCCACGTTATGAAAATTG
TCTGTGAAACTCGTGAAGATAAACTCCTGTCAGAGGAAGTGAAAAACTTT
TGGGACTTAGAAACTATCGGTATCAAGGAGAATGAACGCTCCGTTTATGA
CAAGTTTAACGACGAGATCGATTTTGCTGAAGGAAGGTTTATCGTAAAAC
TTCCGTTCAAAGATTCGCAATCTTCGCTACCCGACCATTATTCATTGAGC
AAGAAACGCTTAGACTCGTTACACAATCGTATTGGAAAGAATCCAGAACT
TTTTGAACAGTATAgtgctgtttttgatgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059998-exon-scaffold_331-1491911889:1340517..1342800 | TCONS_00059998-exon-scaffold_331-1491911889:1340517..1342800 | Clytia hemisphaerica | exon |
| TCONS_00059998-exon-scaffold_331-1510915933:1340517..1342800 | TCONS_00059998-exon-scaffold_331-1510915933:1340517..1342800 | Clytia hemisphaerica | exon |
| TCONS_00059998-exon-scaffold_331-1575043694:1340517..1342800 | TCONS_00059998-exon-scaffold_331-1575043694:1340517..1342800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1340517..1342800 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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