TCONS_00059997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059997
Unique NameTCONS_00059997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length435

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059997 ID=TCONS_00059997|Name=TCONS_00059997|organism=Clytia hemisphaerica|type=transcript|length=435bp
CAACATCAGAGCTATGCTTTTGGTCTTCTGATATTATTTCCTGTTCTGAA
CGAGATAACCTATCAGCACTTGTTGTTTCGACTATTTGTCTGTATCTTGT
TGGATGGATATACTTTCCTATGGCTTGATGAACAAGTATGGTCATTGCTG
TTGTTAGAGATTGATACTGATTGCCTGTCGTTGATACTAATAAGTAATCA
CAAGTCGGTTTCATAAGTGGTCGAATAAAGTCTATGTATGTATCTAATAT
AGTAAATACTTCTTCAGTTAAAATTAGTGTATCAAAGANCCTGTTGTTGA
TACTAATAAGTAATCACAAGTCGGTTTCATAAGTGGTCGAATAAAGTCTA
TGTATGTATCTAATATAGTAAATACTTCTTCAGTTAAAGTTAGTGTATCA
AAGAGATATTTACCTGTCGTTTTGAATTCTCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_331:1331879..1332313

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059997 ID=TCONS_00059997|Name=TCONS_00059997|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at scaffold_331:1331879..1332313 (Clytia hemisphaerica)
CAAAGAGAATTCAAAACGACAGGTAAATATCTCTTTGATACACTAACTTT
AACTGAAGAAGTATTTACTATATTAGATACATACATAGACTTTATTCGAC
CACTTATGAAACCGACTTGTGATTACTTATTAGTATCAACAACAGGNTCT
TTGATACACTAATTTTAACTGAAGAAGTATTTACTATATTAGATACATAC
ATAGACTTTATTCGACCACTTATGAAACCGACTTGTGATTACTTATTAGT
ATCAACGACAGGCAATCAGTATCAATCTCTAACAACAGCAATGACCATAC
TTGTTCATCAAGCCATAGGAAAGTATATCCATCCAACAAGATACAGACAA
ATAGTCGAAACAACAAGTGCTGATAGGTTATCTCGTTCAGAACAGGAAAT
AATATCAGAAGACCAAAAGCATAGCTCTGATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037753XLOC_037753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059997-exon-scaffold_331-1491911889:1331879..1332313TCONS_00059997-exon-scaffold_331-1491911889:1331879..1332313Clytia hemisphaericaexon
TCONS_00059997-exon-scaffold_331-1510915933:1331879..1332313TCONS_00059997-exon-scaffold_331-1510915933:1331879..1332313Clytia hemisphaericaexon
TCONS_00059997-exon-scaffold_331-1575043694:1331879..1332313TCONS_00059997-exon-scaffold_331-1575043694:1331879..1332313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1331879..1332313 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187189	0	0	0	0	0.50186	0	0.282036	0	0	0.477129	0.209097	0.31321	0.108424	0.34417	0.28698	0.353535	0	0.933063	0.791945	0.622161	0.222096	0.179992	0	0	0	1.1481	1.2539	0.260015	0.439869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top