TCONS_00059987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059987
Unique NameTCONS_00059987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059987 ID=TCONS_00059987|Name=TCONS_00059987|organism=Clytia hemisphaerica|type=transcript|length=351bp
NCGCAAGCGTTCTTCATAGGACATATCTTTGCAGATAGGCACGAGTTTTG
TGGCGCGTCTTTGTACACCCTCGatcaaattaacatattttcgAAGTTTA
GGTGACCACATACCGACTGAGCATACTCCAAGTGCGGACGGACAAACGAA
GTATATAGTACTAGGAAGATGGATGGATTCAGATGTTCAAAGCTCCTGCT
AATCACTCCTAGTATTGAATTTGCCTTCTTTACCTGCTTTGCAATATGCC
TCTCGAATGTAAGTTCTGAGTCGATCACAATCCCAAGATCtttctcttca
aaaacatgttcaagcTGATTTCCATCCAAACAATATGGATAGGCATGTTT
G
Run BLAST on NCBI

transcript from alignment at scaffold_331:1152140..1152490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059987 ID=TCONS_00059987|Name=TCONS_00059987|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_331:1152140..1152490 (Clytia hemisphaerica)
CAAACATGCCTATCCATATTGTTTGGATGGAAATCAgcttgaacatgttt
ttgaagagaaaGATCTTGGGATTGTGATCGACTCAGAACTTACATTCGAG
AGGCATATTGCAAAGCAGGTAAAGAAGGCAAATTCAATACTAGGAGTGAT
TAGCAGGAGCTTTGAACATCTGAATCCATCCATCTTCCTAGTACTATATA
CTTCGTTTGTCCGTCCGCACTTGGAGTATGCTCAGTCGGTATGTGGTCAC
CTAAACTTcgaaaatatgttaatttgatCGAGGGTGTACAAAGACGCGCC
ACAAAACTCGTGCCTATCTGCAAAGATATGTCCTATGAAGAACGCTTGCG
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037743XLOC_037743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059987-exon-scaffold_331-1491911889:1152140..1152490TCONS_00059987-exon-scaffold_331-1491911889:1152140..1152490Clytia hemisphaericaexon
TCONS_00059987-exon-scaffold_331-1510915933:1152140..1152490TCONS_00059987-exon-scaffold_331-1510915933:1152140..1152490Clytia hemisphaericaexon
TCONS_00059987-exon-scaffold_331-1575043694:1152140..1152490TCONS_00059987-exon-scaffold_331-1575043694:1152140..1152490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1152140..1152490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.20525	3.80994	9.78532	9.85697	3.19576	1.43448	1.15108	0.707466	0.845261	1.19696	2.80214	4.53687	1.98616	0.345123	1.47628	2.59924	1.42988	1.48381	1.6615	2.66498	0.814223	3.01811	0	2.60607	0.942317	1.17842	3.51136	3.00019	1.97453	2.17013
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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