TCONS_00059985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059985
Unique NameTCONS_00059985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059985 ID=TCONS_00059985|Name=TCONS_00059985|organism=Clytia hemisphaerica|type=transcript|length=472bp
ATTATGGATAAAAATATTCGATTACAATTAcataaaatacaagaaaaata
atttttactaattttgaattttctcaaCGAAACTGTTACAACATACGAAA
AAGTGATTTGTTTTTATCCCTGACTGGAACGTGCTATTGTCTGGATATTT
TCACCAGAAACCCCCACCCTTTATCTTTGGTCAACAAATCAACAAAGAAT
AATTAAATTTAGACATTATTTAACAATTTACAGTTTTGTATGGTTTAAAA
GTTTATCATTGAGTTCCTCACGGCCAGACTTAGTGTAGTGGGATTGACTG
CCACACGGGGGCACTCTAGGCTGCTTGCGGATGcaactaacggattcgtg
ctccttatactacctggggttttgtagaggtttgCAATGCAGACTAGGGG
CACTCTATTAAAAAATGACCGTACGTGCgacccaaaattaggcctttgaa
atcgcacccttacagtgcagag
Run BLAST on NCBI

transcript from alignment at scaffold_331:1142147..1142618

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059985 ID=TCONS_00059985|Name=TCONS_00059985|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at scaffold_331:1142147..1142618 (Clytia hemisphaerica)
ctctgcactgtaagggtgcgatttcaaaggcctaattttgggtcGCACGT
ACGGTCATTTTTTAATAGAGTGCCCCTAGTCTGCATTGcaaacctctaca
aaaccccaggtagtataaggagcacgaatccgttagttgCATCCGCAAGC
AGCCTAGAGTGCCCCCGTGTGGCAGTCAATCCCACTACACTAAGTCTGGC
CGTGAGGAACTCAATGATAAACTTTTAAACCATACAAAACTGTAAATTGT
TAAATAATGTCTAAATTTAATTATTCTTTGTTGATTTGTTGACCAAAGAT
AAAGGGTGGGGGTTTCTGGTGAAAATATCCAGACAATAGCACGTTCCAGT
CAGGGATAAAAACAAATCACTTTTTCGTATGTTGTAACAGTTTCGttgag
aaaattcaaaattagtaaaaattatttttcttgtattttatgTAATTGTA
ATCGAATATTTTTATCCATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037741XLOC_037741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059985-exon-scaffold_331-1491911889:1142147..1142618TCONS_00059985-exon-scaffold_331-1491911889:1142147..1142618Clytia hemisphaericaexon
TCONS_00059985-exon-scaffold_331-1510915933:1142147..1142618TCONS_00059985-exon-scaffold_331-1510915933:1142147..1142618Clytia hemisphaericaexon
TCONS_00059985-exon-scaffold_331-1575043694:1142147..1142618TCONS_00059985-exon-scaffold_331-1575043694:1142147..1142618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1142147..1142618 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.27341	3.01879	0.173431	0.324727	0.114122	0.283349	0	0.17968	0.358861	0.186341	0.765986	0.986425	0	0	1.14718	0	0	0	0	0	0.289664	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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