TCONS_00059976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059976
Unique NameTCONS_00059976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059976 ID=TCONS_00059976|Name=TCONS_00059976|organism=Clytia hemisphaerica|type=transcript|length=940bp
CATGTATTGACTTATTAAACTATAGTGTAGAATAAATTACCAACTAACTT
TCGACAGGGAAAATTACAAGTCGTAAAAAGATGATAGGAATGAAAAGAAG
TGCTTCTACTACAGAACAAGAAGAAATCCAAAGCTTAAaagctgaaaatg
aaaaattgaaaaagagttTGGAAGAGAAGGACAAAGAGAATAAGCTATTG
ACAGCAGCTATCGAATCTTTGAAAGGTACAGCCAGCTATGTTTTGATGGA
ATTACGCTTAAGAGAGGGAATCGATAAATTTCTCGACAAAGATAAACATA
TTACAAACTTGTATAGTGAATATGGATTATGGGTGAAAGATGTTGAATCT
agaatgcctcaaaatggtggAGTGGAGGAAACTGAGAGATATCATTTCTA
TAAAACAATTAGTGTAGATGCTACGCAGATTTACTCGACGATTTATCTAC
AAATTAGCAACATTTATATGTCGAGTTTCCAAGGTGGTAGATTTGCAATC
TATAGCAAGAAGACCTGGTTGAATAACAAGGAAATAAACAAGACGGTCTT
GCTGCTACATCCTACAGATCATGGAAAGAGTATTGAGCTTGTACCCGACG
ACAACCAAGTTAATGGTAGATCTCTCACGTGGCGTGCAGACGGTATCAAA
TATGAAAACGCTTTCCAAAAAACAATCACTCCGAATCAACCTACGCTGAT
gtattcatttttgatttgtatTTTGAGAAAGCGAACATAGAAGGAAACGT
TGACCGGTTAGACTTTCAAAAGCTTTGTTTTTCGGGCACGCTCAAATGAC
CGTGTCAATTAGCTTTCAATTATTCTAAAAACTGTACTGTTATTGTAATT
AAGTAAAACATAGAAAGCCGTGCGATGTgtaaccaaatcaaaataaaaca
taacacatttttctttaacgATATTTCGACCTCTATACAT
Run BLAST on NCBI

protein sequence of TCONS_00059976-protein

>TCONS_00059976-protein ID=TCONS_00059976-protein|Name=TCONS_00059976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MIGMKRSASTTEQEEIQSLKAENEKLKKSLEEKDKENKLLTAAIESLKGT
ASYVLMELRLREGIDKFLDKDKHITNLYSEYGLWVKDVESRMPQNGGVEE
TERYHFYKTISVDATQIYSTIYLQISNIYMSSFQGGRFAIYSKKTWLNNK
EINKTVLLLHPTDHGKSIELVPDDNQVNGRSLTWRADGIKYENAFQKTIT
PNQPTLMYSFLICILRKRT
Run BLAST on NCBI

transcript from alignment at scaffold_331:998877..999816

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059976 ID=TCONS_00059976|Name=TCONS_00059976|organism=Clytia hemisphaerica|type=transcript|length=940bp|location=Sequence derived from alignment at scaffold_331:998877..999816 (Clytia hemisphaerica)
ATGTATAGAGGTCGAAATATcgttaaagaaaaatgtgttatgttttattt
tgatttggttacACATCGCACGGCTTTCTATGTTTTACTTAATTACAATA
ACAGTACAGTTTTTAGAATAATTGAAAGCTAATTGACACGGTCATTTGAG
CGTGCCCGAAAAACAAAGCTTTTGAAAGTCTAACCGGTCAACGTTTCCTT
CTATGTTCGCTTTCTCAAAatacaaatcaaaaatgaatacATCAGCGTAG
GTTGATTCGGAGTGATTGTTTTTTGGAAAGCGTTTTCATATTTGATACCG
TCTGCACGCCACGTGAGAGATCTACCATTAACTTGGTTGTCGTCGGGTAC
AAGCTCAATACTCTTTCCATGATCTGTAGGATGTAGCAGCAAGACCGTCT
TGTTTATTTCCTTGTTATTCAACCAGGTCTTCTTGCTATAGATTGCAAAT
CTACCACCTTGGAAACTCGACATATAAATGTTGCTAATTTGTAGATAAAT
CGTCGAGTAAATCTGCGTAGCATCTACACTAATTGTTTTATAGAAATGAT
ATCTCTCAGTTTCCTCCACTccaccattttgaggcattctAGATTCAACA
TCTTTCACCCATAATCCATATTCACTATACAAGTTTGTAATATGTTTATC
TTTGTCGAGAAATTTATCGATTCCCTCTCTTAAGCGTAATTCCATCAAAA
CATAGCTGGCTGTACCTTTCAAAGATTCGATAGCTGCTGTCAATAGCTTA
TTCTCTTTGTCCTTCTCTTCCAaactctttttcaatttttcattttcagc
ttTTAAGCTTTGGATTTCTTCTTGTTCTGTAGTAGAAGCACTTCTTTTCA
TTCCTATCATCTTTTTACGACTTGTAATTTTCCCTGTCGAAAGTTAGTTG
GTAATTTATTCTACACTATAGTTTAATAAGTCAATACATG

Coding sequence (CDS) from alignment at scaffold_331:998877..999816

>TCONS_00059976 ID=TCONS_00059976|Name=TCONS_00059976|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_331:998877..999816 (Clytia hemisphaerica)
CTATGTTCGCTTTCTCAAAatacaaatcaaaaatgaatacATCAGCGTAG
GTTGATTCGGAGTGATTGTTTTTTGGAAAGCGTTTTCATATTTGATACCG
TCTGCACGCCACGTGAGAGATCTACCATTAACTTGGTTGTCGTCGGGTAC
AAGCTCAATACTCTTTCCATGATCTGTAGGATGTAGCAGCAAGACCGTCT
TGTTTATTTCCTTGTTATTCAACCAGGTCTTCTTGCTATAGATTGCAAAT
CTACCACCTTGGAAACTCGACATATAAATGTTGCTAATTTGTAGATAAAT
CGTCGAGTAAATCTGCGTAGCATCTACACTAATTGTTTTATAGAAATGAT
ATCTCTCAGTTTCCTCCACTccaccattttgaggcattctAGATTCAACA
TCTTTCACCCATAATCCATATTCACTATACAAGTTTGTAATATGTTTATC
TTTGTCGAGAAATTTATCGATTCCCTCTCTTAAGCGTAATTCCATCAAAA
CATAGCTGGCTGTACCTTTCAAAGATTCGATAGCTGCTGTCAATAGCTTA
TTCTCTTTGTCCTTCTCTTCCAaactctttttcaatttttcattttcagc
ttTTAAGCTTTGGATTTCTTCTTGTTCTGTAGTAGAAGCACTTCTTTTCA
TTCCTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037732XLOC_037732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059976-proteinTCONS_00059976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059976-exon-scaffold_331-1491911889:998877..999816TCONS_00059976-exon-scaffold_331-1491911889:998877..999816Clytia hemisphaericaexon
TCONS_00059976-exon-scaffold_331-1510915933:998877..999816TCONS_00059976-exon-scaffold_331-1510915933:998877..999816Clytia hemisphaericaexon
TCONS_00059976-exon-scaffold_331-1575043694:998877..999816TCONS_00059976-exon-scaffold_331-1575043694:998877..999816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:998877..999816 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242666	0.18931	0.714373	0.752664	0.785396	0.568911	1.24794	1.16831	2.94465	3.44479	2.45853	1.93937	6.55241	7.40812	12.5392	10.6173	8.30688	7.76741	10.7311	11.7692	3.09702	3.77655	3.00495	2.63075	5.78398	7.3478	6.12247	4.54544	0.53868	0.933011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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