TCONS_00059912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059912
Unique NameTCONS_00059912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059912 ID=TCONS_00059912|Name=TCONS_00059912|organism=Clytia hemisphaerica|type=transcript|length=1643bp
ATTTGGCATGTCTGATGGTTCATCTTGATTGAACAacctaaatattcaaa
atggcaGGAGTtgtatttgaagatatttttgatgtgaaagaCATTGATCC
AGGAGGCAAGAAATTTGATAGAGTGTCAAGACTTCATTGTGAAAGTGAAA
GTTTCAAAATGGATTTGATTTTGGATGTCAACACACAGATCTACCCAGTT
GACCTTGGTGAAAAATTCCGTCTTGTTTTGGCCACAACATTACGTGAGGA
TGGAACTCCAGATGATGGTGAATACAATTCAGCAGATAATGCCCCATCAA
GAGCTGACCAGTTTGAATATGTCATGCATGGAAAAGTGTACAGGATAGAC
GCTGAAAATTCTGGTGGTGGTGATCATTTTGGAAATAGAttATCAGCCTA
CGTTTCTTACGGTGGACTGTTGATGAGGCTACAAGGTGACGCGAATAATC
TACACGATCAACTCAGAAAGACAAACGGATTTCGAATTTGGAGAAATGAA
ACAtggaattttcaaataattacAGAACATTTTATgtggattttttgaaa
tttgctaCATGATATTACTTGTATAAATCTATTATGGTTAACAAGATTGA
TAATCTAATGAACTCAAAATATTCACTTTCGTCAAATTTTAAGTGCAAAA
AAgttagagaaaaataaaaaaatacttttttagcTTCCTCGGTTTTCCCA
CGTTATTCGTTTTAAACTTTATACATCTTCTTCCAGTGCGAAATTTCTGT
AAATTTCTTGCTGTTTCTTTGCTTGAAtttgtttgaaactttttcGTAGT
TCTTCCATCACGTGTTGTTCCCACAATACATTGCGCATTTGATGTTTTGT
TAATGGATAAAAGAAACAACCAATATTGATCTCTTCTAAAGTGATTCCAG
CCAATTTAGCATCGAGTTTGATACATCCTCCGACTTTCTCTGTCCATTCA
ATGTTAAAGAAGTCAATACACACGCTTGCGTATTTCTCCAAGTGTGGGAT
ACCGGCACAGAGTGGTGGTGGGTTTCGcactgaaaaataaattattgaGA
GTCAAATCTACCTTGGAGAATTATTGCCTGGAAAGCTAAGGCTATACTGA
GCAATTTTTTCAGGCGCGTGCAATGCAATAATTGTTGCCAATTGCGCTGC
ACTCGAAAAGAGTTTAATTCTAGCCACCAAAAATAAGTTTTgcaattaat
tttaaaattttaaatttccttCTCACAGCTTATTTCatccagccaaaaaa
ataatttgtattACGAGTGTTTTAAACAATAggacaaaagaagaaaagta
aaCATAAAGAGAATTTCTCCTCTTTTTTTGATCTGATCTATTTTGTTGCA
GCCTcctgcaatttttttttgcgatatttttttgcgttttattGCGTTGC
AGAAAAGATTGCAGAGAATTTGACTAGGctacaatctttttttttcgggC
GCTTGTTGCAAAGATTGTGTTGGAAGCGCCTGAAAAAATTGCTCAGTATA
GCCTTAGCTTAAGAgtggaaagaagaaaacaaattttattttttgatttt
acttacGAGAGACTTTTTCAACGAAAAGAGTGACGTCATCTATGTTGAGC
TTCACATCCAATCCCTGAAAATATACGAAAACTTGTCTATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_331:816462..826564-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059912 ID=TCONS_00059912|Name=TCONS_00059912|organism=Clytia hemisphaerica|type=transcript|length=10103bp|location=Sequence derived from alignment at scaffold_331:816462..826564- (Clytia hemisphaerica)
ATTTGGCATGTCTGATGGTTCATCTTGGTGAGAATATAGACCTAGCTTTT
TTAAAAGAATTCTGTTTTTTTTTTAATTTTTATAAAGGTAAAAGTGTGAG
ACATTGAGAGAGCTTTGATGATTGGTCTATTCATAAATCCTTTGGCTCTC
TGAATGACAAAAACTTTATGATTGATCTAGCCTGGGAATCCAAGCGTTAA
ACTTTTTTCACAGTCTAGTTTATGATATTTTTGCTGCTGGTTTAACGCTT
GGTGCAAGATTTTTCCCTGCAATGTAGGTTCAGCCTGATTGGCCAGCTTT
CGGCGTATTACTTAGCAGTACTTTCGCGCGCATTTTGATAATTTCGATGC
GCGCGCATAATTTATGGAAAAAGCTGACTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATAGATTC
ATTTCGAAACAAAATGGCTGTTGGCTGGAAGTCTAAATACATGTGGCTGA
TGTTTTGATGTGGTTTTTAGTAGTTTTGAAAGTCTTTAGAGCTTGTCTNN
GGGTTTCCAAAGTTCAGAAACTCTGTCAACAAGGGTTCACACACAGACTG
TTTATAACATTCTGTGTCAGACTAATCTACCTGCACCAAGCTCTATAATT
TTAGAACTTTGTGAGGTGAGGTATTTTTTGTTTTTTCTAAAATTATGAGC
TTGGATTCCCAGGCTATGATTGATCAATCAATTCTCAATAAAATAAATGT
TTGCTGCTGCTTCTCTCTCAATCAGTATAAGTCAATGACCCTGCCAGTTT
AGATTAAAACATCTATATCAAGATTACAAGATTTGGCTAGTTTTACTTGT
TCCATCTGCCATATTTGTATTTATCGGCGATCCAAAAAAGGTTGGCAGAC
GATATCATCCACCAGGATGCAAGTGAAATTTTTCAATCTGCGGACCTAGA
CGGGGGTTCGGTTATTATCAGTTAGGGTTAGGGTTGGAGCTCGAGAGTCA
CAATATAAGGCCGAAGGCCTTCTTAGGGGCATCCGTACCCTGTGACCTAA
CTTAGGATCCCGTAGGGATCCTTGTAATGTAGGGGCACCGGTAGGGTTGG
GAGCTTTCTTAATAAAGGTCTGTAAATTACACGCTATAAGTAATTGTGAG
TGACAACTTTCTGCCGTGTCTCGTTGGCGCAAGCGGTTAAGCATTGGGTT
TGTAAACCAAGGTTGCTTGCATTTGGTGGTTCGAGCCGGGGTTGGAGACC
AATTTCACCGGTACGGTCAAATTTCAGAAAAATACTTAGAAAACAGTTAG
AAACACTAGAAGAAAATCAGGATAGAAGATAGGAAAGTAGAAAATAGGGG
GAAAATAAGAGAGGATGCATCCTGGTGGATGATATCGTTTGCCAACCGAT
CCAAAAAATATCTGATTGGTTAAAAAAAGAGTACAGTACAATATATCTTG
TATTTTTTACATGTACAAAATATAAATTGACAAAAAGATGTTGTTGCAGC
GGTAGAAGCAATCTAACGTGACTTTGCTACAAAAGTATCCTGCGCTTTTT
TCCAACATAAAAAGTGCATTTTTGGGTCATGATCACCAATAAACTAGTTA
TCAGACATTTGCTAGTAGTATGAGAAATATTCCACTCGTTCCGGATTTTC
CGTAGATATTGTATACACGGAAAAATCTCGGAACCTGGAAAATATTTCTC
ATATTGTATTGTTAGAAGTCGGGTAACTTGCATCAGTGGAGGCTAACATG
CATAGCCCTCAAATGCAATGAATGACCTGTCTGGTCATTAAAATACAAAG
TTAAATCAAGACAAAAATGGTAGAGTAGAGCTGCGAGCAGAGCTGCGTAG
TTGTATTTTAATGACCAGACAGGTCATTCATTTGAGGGCTATGCATGTTA
GCCTCCACTGATGCAAGTTACCCGATCTCACGGTACTCGCAACTGTCCGA
TAACTATTAGTTATTTAAAATCAATTGTATAGCTATGCAAAAATCAGTGA
GGCTAGAACTTTGATTTTTGAGGATTACGATTTTTAAGGATTACGATTTT
TGAGGATTACGATTTTACCAGCTTTTTAGCAATTTTTGCCTTTTAACCCA
AATCTTGCAACCTCTTTACCTTAACCTCTTTACTTTTCAGCGTTCCGAGA
AAAACACATAGCAGAAATTTTTTCATCTTCACAGGATCGACTCTCAACAA
CAAAATACATCTTTTGTTCTTTGGGTTTGTTTCTGACGTTTTTCCTTCAA
AGAATATCAATCACTTTCCTTTTCCCCTTGAGCGCGCGAGAAAAAAATGA
TTAGCTCGCGTTCTCCGTGCGGGTGAATAAAGATGAGGCGGCAATCTTGC
ACTGAGGGAGCTATTTTTGTTCAAAAAAATCATAACGTCACTCAATAAAA
AATGGCGTTCATGTCTTTTCGCACTTTTTTTAGCCTATACAACGACCCAC
GGCATGGCCCGAACTTGTTCGGGCCTGTTCGGACCATGCTCGGGCCACAA
AAAAGTATTATTGAATCGGCCCGAACATTTTGTTCAGACCATGTTCGGGC
CATGTATTTACAATTGATACGGATTTTATTTACCTTTCCTGGTTTATCAT
CATCCATTGTTAAATATTTTCATTAGACAAATTCAAAGTTCCAGTTTGAT
TCACAAAGTTGTATAACAGTACAAAAAACGATCCAGAAAAATTCTGCTTC
GAATAGGAGAAAAGACCACGAGAAAAAAAGGGAACGGGATAAAGAATAAA
AAGAAGACCATATTATGTAAGATTCAAATCATTCTTTTTAATAATTTTCC
TAACTTAATTGGAAAATAGATAATTAACTTTTATATTTGAACAATATATA
TTTGAATAAAGATGAAGATTTTTAAATTTGTTTGCTAAAATAAGGAATTT
AAAATATAAATATTGGGTCCTGAAATTACACGCGCGATCGTAGCGAGTTT
TCAAAAATCTGGCCCGAACATTTTTAAAAAGTATTAATCAAGAGGCCCGA
ACATGTTCGGGCCATGCCGTGGGTCGTCCTATACGATGTAGCAAACATAG
TGAGTATTATAAGCACACCTGTGCTTTTAATTGGCTGACAATTTCTTTTG
CGTCGGAAAAACTTCTTCAAACTTTCAGCGATGATTGATCAAACTGTTAC
AATGAAAATTATCCAGCGCATTTTTTATCTTCTTACCTTCTGCATCTTTA
ATGAAGCACTCGAAGTTTACTGAAAGTAAGCACATAAGATATTCTTATAA
TTAATGATATTCATTTAAACACGCTTCGTTATGGGCTGCAGTGGAGTGCA
TGACGTAACTCGCGCGGGAACTAACTTGCCTTCTGTTGGAAGATCATATT
GGGCGTTTTGGACTTAACAATAGATCCAAAAGGCGCCATAAGGCTTTGGG
AAGTAGCAATGTTTTTGGTTGTTTTCGATGGAAAATGGTAAGAAACTTAA
GTTTACAAGTGTCATTTAGTTTTTGCTGGCAATTATAGAATGGCAGGATC
CTGGATGGTTTCCCTAACTGAAGTATTTTTGAGCGCAAGTTTTTAAGAAA
GTCATAATGGCAGATAATTTTAAAAGTTTCTGAGGAAATGTGTGTAATTT
ATCGATGTTGATGGCTTGTTGATTCTTTAAAGAAAAAAGATAACAGGTAT
AGCTTTTTCTAATCCTGGAATATCGAGGTTCCAGCTACACTGCCCTTGAA
CAAAGATTATGAAGAAAGTAACCCTGATTGATGTTATTAAATTAAAAGTG
TAATCTTGTAGAGAATAAAGATTAAATTTACTTCTGCTCTCATTACACAT
TATACCAGATTATACTACAAACCTTAAACTCTTCTGTCTTCACATAAAAT
TTATGGAAAACACATATTTGGACTTTGTACCCAATGCTATGCTGCACGCA
AGCACTTAAAGCTACTGTCAGCAGCTCTAACTTGGGACTATCTGACAAAT
CATGGGATGGCAATTCGGCCACCAGTTCACCGAACCTCCAAAGTCATTAG
TTTGAGTCAATGCAAACAGGAAATTATAAAATACACGATAATTCGATTTT
GCATGAAAAGTTGAAGTCGGTTTTTTTATTTTATGTTTGACATTTGATGT
TCGTTTGATATTTGTTTGATATTCTCAAATTTGCTTTTTGAATTTCTTGT
GATTACTTTTGGAATTGGAAACTATTGGAAGCCAATAGAGTTTATTCTCA
AGGGTGTCTGTGCCAAATTTCAGTATACTCTCCATTGCAGTGTGCTCCCT
CTAAAAATTTGTAACCGTCAAACCTCATTTCGAAATGAATTCCAATAGTT
TCCAATTCTAATTCCACAGGAGCCCAACTTGTCATTTCAGGCAAAATAAG
TTTGATGGTTACTATTTTCTAGAGGGAGCACACTGTGACAAATTTCAGAG
AAGTTTGAATTACTGGGAAGGTGTATTTACGCAATTTTTGTTCACGAAAA
GTTTCCAAATTCACACATTCACGCTTTTTGTTTTATTTTCACGCATTCAC
GCAAGTGGAATTAAGCCCATTCTTTCATGCAAACTGCTTAGGGGTATTTC
AGGAAGGCTCTATTGCCTATCCATTGATAGATCTTTCGTTGATTGACTCT
AAGATGGATGATCAATTGATCACAATCAATTTTCTTTTCATATTCAGAAT
TCACCAGTAAAAAATCTGTTCGTCCAGGTAAAAGATTAGCAGATTCAGGG
CAGAGCCTGGTGCAGGTTGAGGGGGGGGGGAGTCCCTGAAAACCCATGTT
TTTTGTCTGAAGAGGGCCTTTAAAATAAATAGTGCAAAACTTAACTAGTA
AGTCTTTAAATCCTTCTAATGGTGTCTGTAGGCCAACACATCACCCCAAG
ATTGATGATCATGCTAAATATATTTAGTGTGATGTGCACCAATTCCAGAC
TGGTCATTGTGAAAGCCACTGAAAGGTAACAGCAACAAAAAGAAGCAGCC
TCATGAATTGTGGCAATCAGTCTACAAAGGAGGGCCGTGAAGATATCAGT
AGAAGAAACCTAAAGAATATTATCAGACAGCCTCCCTTAAGGTTTTTGAA
TAGTCATTTTTCAACTTCCCAATGAGAAAAAATCTTCCCAAAGGGGGATA
TATCCCAAAAATCTGAGCTAATTCTTTTTGTTTGGGATGATTATTTTTAA
ATTAATTGGTCTAATGTGAATTTCTCCTACATAGCTTTCATATGATAACA
AATCACAAATCAAAATGCCTGCTAAAACACTTACTCAATATACTCAATAA
CCCAGGTCATTCTTTTGTTTAGAAATCACTCATTGGTGCGTCAAAATTTT
CAATACAGTAGCTAGGAAGTATTTTCTTTTGCTACCAAAGGACCTAAACA
ACCAAATAGGGACTCACAACCTTGTGCTCTTTAGAAATGTCACATGAGTC
ACATGAGACTTACTTAATGGTATTGATGGCTCTTTCGATAAACAATTCCT
AAATACTGTATATTTTATCATGACATAATTTTTATTGCTTTCAATTACAG
TACTCAGTTTTCCAAGTTTTCAATAAATTTTTACTTTCGTTAATTTCATG
TATGACAACTGGTGATGACATGATCTAAAAAGCTTTTTATCTCATTTTCA
ATTTTAGTTATATTTTAATTTCAAAATGAAATTGAAGTTTACAATTCTTT
GACACTGTTTTTACCTCCATATGTACCGGTCCTGGTTGTCAAAAAATTTA
AAAAAGTTTAAAATTGTTGAAATTTATATAGATATGAACAATTATTAACA
TTTAGATTGAACAACCTAAATATTCAAAATGGCAGGAGTTGTATTTGAAG
ATATTTTTGATGTGAAAGACATTGATCCAGGAGGCAAGAAATTTGATAGA
GGTATTATTCACAATGCTTTCAGGCCTTTCTTCTTGCCCTTTAAGCGTCC
GGTTATCGGACGCTACCCCTCCTGAAATTACTAAAATGGGCTCTTCCAGA
AAAAATCCGTTCATGGGGGGTGGAGGATATATTATTTTTTTCATGAATTA
CCCCTGGACATTTTGATTTTTAACCCCCTGGACACGCGTTATACCCCTGG
ACAAACATCAAATCAACCCCGTGGACACAAAAAATTACCCCTGGACATTG
GAATTTACTCCCTGGACATTGCAATTTTTCAGTATTTTTTCAATACCCCT
GGACAATTCATCCTCCACCCCCCATGAACAGATTTTTTCTGGAAGAGCCC
AATATTGGTAAAAACTGTCTTTTTAGTGGAACAACACCTTAAAAAGTGCC
ATTTTTGGCCACTAACGGACGCTGTCGTGCCTTTCTAATATATGGCCTGG
CTTTTTGGAAATCAATCAGTTTGGGGTCTTTCTCTTCTTTCTTTCTTGAA
AAAGAGATACCATTGAGGAAAAAATTTGGTTGGAATTCGATCTGCTATTT
GATCTCCAAAAGGTTTTTGTTGTAGAAGGAATTTTATTAGACAAATAGCC
TGAAAGAAATAATTTGGTAAGGGATCTGCGAGAATTTGATTTGTTGATTA
CAAGAAATCTACCGGGTGCACCAAAATAAAGTATACAGGTTTGTCAAGAT
ATTGTGAGCTTCAGGATTTCAATTTTTTGTTCATTCTTTTTTCATCGTAT
AGAGGATGCTCTAACTTGAATTTTGAGCTATCATACTTTAGAATTGAAAA
AGTAGTTCGAAAGTTTTTTCTTTTTTTAACTGACTTTTTTTCCATGTCGA
AATTTCAAAAAATCATTAAAAACAGCAATCACGCTATAAATAAGACAAAA
TGACAAAAACACAATTTCATTGTTTTTTTGATTCTTTTTTTTCTTATTTA
TATTTTGCCAACAGTTTCTCCATCTTATTTGCACATCATGAACATTTCCA
ACACGATTAAACTCAATGCAGACCCAAGTTCTTTGAGTCACTAGTCAAGG
AATGGTGATCTATTTTTTCAAACGTTTTTGTCATATAGCACACACATAAC
ATCAAAACCTCTCTTGGAGATTTATAAAACTTTTTTTCAGCTTTTCCAAA
AACATTACCCACTTGGGAATAGCTTGTTTTACCATATCTTTCAAATTTCG
TAATGAGTTTTGATGAACACAGTTGCATTTTTGGTATTTTTACGTGTAAA
GAAGGTAATTGTCAAGAGAAAAGTATGGTCGCTGTTTTTGATGATTATCT
AAAAATTCAACATTAAAAAAAGTCTTTTTTAAAAATGATTTTCGAACTAC
TTTTTCAAATTCAATATATGATTAGAGAGCATCCTTTATACGATGAAAAA
AGAATGAACAAAAAATTGAAATCCTGAAGCTCACAATATCTCGACAAACC
TGTATACTCTTTTTTGGTGCACCCGATACATTAGGTTAAATCCATTTAAA
TTTCTTCCTCAATTATCTTTTCACCTCATCATTAAATTTTCAAAACATGC
AAAAACACTGTAGGCTTCGATTATTGATAATTATTCCTCTAGAAGAACCT
ATATATCTTTTCTATTNTGTAGGCTTCAATTATTGATAATTATTACTTGT
CCTCTAGAAGAACCTATATCTTTTCTATTGTTATCAGTGTCAAGACTTCA
TTGTGAAAGTGAAAGTTTCAAAATGGATTTGATTTTGGATGTCAACACAC
AGATCTACCCAGTTGACCTTGGTGAAAAATTCCGTCTTGTTTTGGCCACA
ACATTACGTGAGGATGGAACTCCAGATGATGGTGAATACAATTCAGCAGA
TAATGCCCCATCAAGAGCTGACCAGTTTGAATATGTCATGCATGGAAAAG
TGTACAGGATAGACGCTGAAAATTCTGGTGGTGGTGATCATTTTGGAAAT
AGATTGTAAGTTTTGTTTTTTGTCCCCTTGTTTTTGATTAATTTCGGATA
GGTCAAAATTTTCAATTTTTCAACATAACTTTTAGTTTTATATACCAAAA
TTTAAGTTAAGCTTTCCTCTATAGAAAGACAAAAGAATCAACAAAAAAAT
CTTTAACTGTAAGCTCACAATATCCTGACAAACCTGGTGGATACTTTTTT
TGGTGCATCCGGCATATTTTCTTATTTTCAAGGGAAATGTATCATTTTTT
GTATCATTTTTGGAAGAATTACACGCTTTTTTTTTATAAGAATAGTGTAC
TTTGGTTGAGGGTGAGCATTATTCTTATTTTTCTATTGTTCTAAACAATA
GGCCTATTGTTTTAAACCCGAAATCTCACCCTGATATTCTTATAGAAGTT
ATTCTTATAAAAGAAAAAGCGTGTATTTGTGTATTCTTGAAGGAAAATTA
GGATGCCTTCTCTGTATTTTAGAACGAAAATAATAAATCCTTTAATGTAT
CTTGAAGGAAAATGAGAATTATTTCGTTGTATTTTTGAAGGAAATTATAA
AATATCGATGTATTTTTGAAGGAAAAATTATTTCGTTGTATTCTTGATGG
GAAATTAAAAAATATTCCTTTGTATTTTTGAAGGAAAATCAAGAAATATT
CCGTTGTATTTTTGAAGAAAAATGAAGTATAATTGCATGATTGTTGAGAA
TCTTGGACGAACAAACTCTTGGCCACGTTTAATTTCATTATTATTAAATA
TATTCTTTTCAGATCAGCCTACGTTTCTTACGGTGGACTGTTGATGAGGC
TACAAGGTGACGCGAATAATCTACACGGTATGGAAGTTGATCAGCTAATG
TATTTGTTGATGAAAAAAATCGCCTTTTAAGGGATACAAATGGGATACTT
TTGGTGTAAAAAGAACATTTAATGAGGAGAGGTCGAAGAAAGATCATTAT
TTTGAATCGCAGAGAACGATTTCGATGTTAGGCTTTTTGAAGCTATTGAA
AAAGTGTTCATTTTAGATCAACTCAGAAAGACAAACGGATTTCGAATTTG
GAGAAATGAAACATGGAATTTTCAAATAATTACAGAACATTTTATGTGGA
TTTTTTGAAATTTGCTACATGATATTACTTGTATAAATCTATTATGGTTA
ACAAGATTGATAATCTAATGAACTCAAAATATTCACTTTCGTCAAATTTT
AAGTGCAAAAAAGTTAGAGAAAAATAAAAAAATACTTTTTTAGCTTCCTC
GGTTTTCCCACGTTATTCGTTTTAAACTTTATACATCTTCTTCCAGTGCG
AAATTTCTGTAAATTTCTTGCTGTTTCTTTGCTTGAATTTGTTTGAAACT
TTTTCGTAGTTCTTCCATCACGTGTTGTTCCCACAATACATTGCGCATTT
GATGTTTTGTTAATGGATAAAAGAAACAACCAATATTGATCTCTTCTAAA
GTGATTCCAGCCAATTTAGCATCGAGTTTGATACATCCTCCGACTTTCTC
TGTCCATTCAATGTTAAAGAAGTCAATACACACGCTTGCGTATTTCTCCA
AGTGTGGGATACCGGCACAGAGTGGTGGTGGGTTTCGCACTGAAAAATAA
ATTATTGAGAGTCAAATCTACCTTGGAGAATTATTGCCTGGAAAGCTAAG
GCTATACTGAGCAATTTTTTCAGGCGCGTGCAATGCAATAATTGTTGCCA
ATTGCGCTGCACTCGAAAAGAGTTTAATTCTAGCCACCAAAAATAAGTTT
TGCAATTAATTTTAAAATTTTAAATTTCCTTCTCACAGCTTATTTCATCC
AGCCAAAAAAATAATTTGTATTACGAGTGTTTTAAACAATAGGACAAAAG
AAGAAAAGTAAACATAAAGAGAATTTCTCCTCTTTTTTTGATCTGATCTA
TTTTGTTGCAGCCTCCTGCAATTTTTTTTTGCGATATTTTTTTGCGTTTT
ATTGCGTTGCAGAAAAGATTGCAGAGAATTTGACTAGGCTACAATCTTTT
TTTTTCGGGCGCTTGTTGCAAAGATTGTGTTGGAAGCGCCTGAAAAAATT
GCTCAGTATAGCCTTAGCTTAAGAGTGGAAAGAAGAAAACAAATTTTATT
TTTTGATTTTACTTACGAGAGACTTTTTCAACGAAAAGAGTGACGTCATC
TATGTTGAGCTTCACATCCAATCCCTGAAAATATACGAAAACTTGTCTAT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037674XLOC_037674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059912-exon-scaffold_331-1575043694:826538..826564TCONS_00059912-exon-scaffold_331-1575043694:826538..826564Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1575043694:820614..820709TCONS_00059912-exon-scaffold_331-1575043694:820614..820709Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1575043694:818660..818927TCONS_00059912-exon-scaffold_331-1575043694:818660..818927Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1575043694:817838..817902TCONS_00059912-exon-scaffold_331-1575043694:817838..817902Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1575043694:816462..817648TCONS_00059912-exon-scaffold_331-1575043694:816462..817648Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1510915933:826538..826564TCONS_00059912-exon-scaffold_331-1510915933:826538..826564Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1510915933:820614..820709TCONS_00059912-exon-scaffold_331-1510915933:820614..820709Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1510915933:818660..818927TCONS_00059912-exon-scaffold_331-1510915933:818660..818927Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1510915933:817838..817902TCONS_00059912-exon-scaffold_331-1510915933:817838..817902Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1510915933:816462..817648TCONS_00059912-exon-scaffold_331-1510915933:816462..817648Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1491911889:826538..826564TCONS_00059912-exon-scaffold_331-1491911889:826538..826564Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1491911889:820614..820709TCONS_00059912-exon-scaffold_331-1491911889:820614..820709Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1491911889:818660..818927TCONS_00059912-exon-scaffold_331-1491911889:818660..818927Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1491911889:817838..817902TCONS_00059912-exon-scaffold_331-1491911889:817838..817902Clytia hemisphaericaexon
TCONS_00059912-exon-scaffold_331-1491911889:816462..817648TCONS_00059912-exon-scaffold_331-1491911889:816462..817648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:816462..826564 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.682706	0	0.749914	0.666068	0	0	1.46289e-09	0	1.0147	0	3.30665e-08	4.88097e-09	0	1.12071	3.92119e-09	0	0	7.3327e-09	2.07757e-08	4.57586e-06	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00059912 vs. Swiss-Prot (Human)
Match: RPAB3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 9.641e-69
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 3 
Query:   51 MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRIDAENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLH 455
            MAG++FEDIFDVKDIDP GKKFDRVSRLHCESESFKMDLILDVN QIYPVDLG+KFRLV+A+TL EDGT DDGEYN  D+ PSRADQFEYVM+GKVYRI+ + +        RLSAYVSYGGLLMRLQGDANNLH
Sbjct:    1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETST--EAATRLSAYVSYGGLLMRLQGDANNLH 133
The following BLAST results are available for this feature:
BLAST of TCONS_00059912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB39.641e-6980.00DNA-directed RNA polymerases I, II, and III subuni... [more]
back to top