TCONS_00059909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059909
Unique NameTCONS_00059909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059909 ID=TCONS_00059909|Name=TCONS_00059909|organism=Clytia hemisphaerica|type=transcript|length=1648bp
ATGGCTCTTTCGATAAACAATTCCTAAATACTATTGAACAacctaaatat
tcaaaatggcaGGAGTtgtatttgaagatatttttgatgtgaaagaCATT
GATCCAGGAGGCAAGAAATTTGATAGAGTGTCAAGACTTCATTGTGAAAG
TGAAAGTTTCAAAATGGATTTGATTTTGGATGTCAACACACAGATCTACC
CAGTTGACCTTGGTGAAAAATTCCGTCTTGTTTTGGCCACAACATTACGT
GAGGATGGAACTCCAGATGATGGTGAATACAATTCAGCAGATAATGCCCC
ATCAAGAGCTGACCAGTTTGAATATGTCATGCATGGAAAAGTGTACAGGA
TAGACGCTGAAAATTCTGGTGGTGGTGATCATTTTGGAAATAGAttATCA
GCCTACGTTTCTTACGGTGGACTGTTGATGAGGCTACAAGGTGACGCGAA
TAATCTACACGATCAACTCAGAAAGACAAACGGATTTCGAATTTGGAGAA
ATGAAACAtggaattttcaaataattacAGAACATTTTATgtggattttt
tgaaatttgctaCATGATATTACTTGTATAAATCTATTATGGTTAACAAG
ATTGATAATCTAATGAACTCAAAATATTCACTTTCGTCAAATTTTAAGTG
CAAAAAAgttagagaaaaataaaaaaatacttttttagcTTCCTCGGTTT
TCCCACGTTATTCGTTTTAAACTTTATACATCTTCTTCCAGTGCGAAATT
TCTGTAAATTTCTTGCTGTTTCTTTGCTTGAAtttgtttgaaactttttc
GTAGTTCTTCCATCACGTGTTGTTCCCACAATACATTGCGCATTTGATGT
TTTGTTAATGGATAAAAGAAACAACCAATATTGATCTCTTCTAAAGTGAT
TCCAGCCAATTTAGCATCGAGTTTGATACATCCTCCGACTTTCTCTGTCC
ATTCAATGTTAAAGAAGTCAATACACACGCTTGCGTATTTCTCCAAGTGT
GGGATACCGGCACAGAGTGGTGGTGGGTTTCGcactgaaaaataaattat
tgaGAGTCAAATCTACCTTGGAGAATTATTGCCTGGAAAGCTAAGGCTAT
ACTGAGCAATTTTTTCAGGCGCGTGCAATGCAATAATTGTTGCCAATTGC
GCTGCACTCGAAAAGAGTTTAATTCTAGCCACCAAAAATAAGTTTTgcaa
ttaattttaaaattttaaatttccttCTCACAGCTTATTTCatccagcca
aaaaaataatttgtattACGAGTGTTTTAAACAATAggacaaaagaagaa
aagtaaaCATAAAGAGAATTTCTCCTCTTTTTTTGATCTGATCTATTTTG
TTGCAGCCTcctgcaatttttttttgcgatatttttttgcgttttattGC
GTTGCAGAAAAGATTGCAGAGAATTTGACTAGGctacaatcttttttttt
cgggCGCTTGTTGCAAAGATTGTGTTGGAAGCGCCTGAAAAAATTGCTCA
GTATAGCCTTAGCTTAAGAgtggaaagaagaaaacaaattttattttttg
attttacttacGAGAGACTTTTTCAACGAAAAGAGTGACGTCATCTATGT
TGAGCTTCACATCCAATCCCTGAAAATATACGAAAACTTGTCTATTAA
Run BLAST on NCBI

transcript from alignment at scaffold_331:816462..821039-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059909 ID=TCONS_00059909|Name=TCONS_00059909|organism=Clytia hemisphaerica|type=transcript|length=4578bp|location=Sequence derived from alignment at scaffold_331:816462..821039- (Clytia hemisphaerica)
ATGGCTCTTTCGATAAACAATTCCTAAATACTGTATATTTTATCATGACA
TAATTTTTATTGCTTTCAATTACAGTACTCAGTTTTCCAAGTTTTCAATA
AATTTTTACTTTCGTTAATTTCATGTATGACAACTGGTGATGACATGATC
TAAAAAGCTTTTTATCTCATTTTCAATTTTAGTTATATTTTAATTTCAAA
ATGAAATTGAAGTTTACAATTCTTTGACACTGTTTTTACCTCCATATGTA
CCGGTCCTGGTTGTCAAAAAATTTAAAAAAGTTTAAAATTGTTGAAATTT
ATATAGATATGAACAATTATTAACATTTAGATTGAACAACCTAAATATTC
AAAATGGCAGGAGTTGTATTTGAAGATATTTTTGATGTGAAAGACATTGA
TCCAGGAGGCAAGAAATTTGATAGAGGTATTATTCACAATGCTTTCAGGC
CTTTCTTCTTGCCCTTTAAGCGTCCGGTTATCGGACGCTACCCCTCCTGA
AATTACTAAAATGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAG
GATATATTATTTTTTTCATGAATTACCCCTGGACATTTTGATTTTTAACC
CCCTGGACACGCGTTATACCCCTGGACAAACATCAAATCAACCCCGTGGA
CACAAAAAATTACCCCTGGACATTGGAATTTACTCCCTGGACATTGCAAT
TTTTCAGTATTTTTTCAATACCCCTGGACAATTCATCCTCCACCCCCCAT
GAACAGATTTTTTCTGGAAGAGCCCAATATTGGTAAAAACTGTCTTTTTA
GTGGAACAACACCTTAAAAAGTGCCATTTTTGGCCACTAACGGACGCTGT
CGTGCCTTTCTAATATATGGCCTGGCTTTTTGGAAATCAATCAGTTTGGG
GTCTTTCTCTTCTTTCTTTCTTGAAAAAGAGATACCATTGAGGAAAAAAT
TTGGTTGGAATTCGATCTGCTATTTGATCTCCAAAAGGTTTTTGTTGTAG
AAGGAATTTTATTAGACAAATAGCCTGAAAGAAATAATTTGGTAAGGGAT
CTGCGAGAATTTGATTTGTTGATTACAAGAAATCTACCGGGTGCACCAAA
ATAAAGTATACAGGTTTGTCAAGATATTGTGAGCTTCAGGATTTCAATTT
TTTGTTCATTCTTTTTTCATCGTATAGAGGATGCTCTAACTTGAATTTTG
AGCTATCATACTTTAGAATTGAAAAAGTAGTTCGAAAGTTTTTTCTTTTT
TTAACTGACTTTTTTTCCATGTCGAAATTTCAAAAAATCATTAAAAACAG
CAATCACGCTATAAATAAGACAAAATGACAAAAACACAATTTCATTGTTT
TTTTGATTCTTTTTTTTCTTATTTATATTTTGCCAACAGTTTCTCCATCT
TATTTGCACATCATGAACATTTCCAACACGATTAAACTCAATGCAGACCC
AAGTTCTTTGAGTCACTAGTCAAGGAATGGTGATCTATTTTTTCAAACGT
TTTTGTCATATAGCACACACATAACATCAAAACCTCTCTTGGAGATTTAT
AAAACTTTTTTTCAGCTTTTCCAAAAACATTACCCACTTGGGAATAGCTT
GTTTTACCATATCTTTCAAATTTCGTAATGAGTTTTGATGAACACAGTTG
CATTTTTGGTATTTTTACGTGTAAAGAAGGTAATTGTCAAGAGAAAAGTA
TGGTCGCTGTTTTTGATGATTATCTAAAAATTCAACATTAAAAAAAGTCT
TTTTTAAAAATGATTTTCGAACTACTTTTTCAAATTCAATATATGATTAG
AGAGCATCCTTTATACGATGAAAAAAGAATGAACAAAAAATTGAAATCCT
GAAGCTCACAATATCTCGACAAACCTGTATACTCTTTTTTGGTGCACCCG
ATACATTAGGTTAAATCCATTTAAATTTCTTCCTCAATTATCTTTTCACC
TCATCATTAAATTTTCAAAACATGCAAAAACACTGTAGGCTTCGATTATT
GATAATTATTCCTCTAGAAGAACCTATATATCTTTTCTATTNTGTAGGCT
TCAATTATTGATAATTATTACTTGTCCTCTAGAAGAACCTATATCTTTTC
TATTGTTATCAGTGTCAAGACTTCATTGTGAAAGTGAAAGTTTCAAAATG
GATTTGATTTTGGATGTCAACACACAGATCTACCCAGTTGACCTTGGTGA
AAAATTCCGTCTTGTTTTGGCCACAACATTACGTGAGGATGGAACTCCAG
ATGATGGTGAATACAATTCAGCAGATAATGCCCCATCAAGAGCTGACCAG
TTTGAATATGTCATGCATGGAAAAGTGTACAGGATAGACGCTGAAAATTC
TGGTGGTGGTGATCATTTTGGAAATAGATTGTAAGTTTTGTTTTTTGTCC
CCTTGTTTTTGATTAATTTCGGATAGGTCAAAATTTTCAATTTTTCAACA
TAACTTTTAGTTTTATATACCAAAATTTAAGTTAAGCTTTCCTCTATAGA
AAGACAAAAGAATCAACAAAAAAATCTTTAACTGTAAGCTCACAATATCC
TGACAAACCTGGTGGATACTTTTTTTGGTGCATCCGGCATATTTTCTTAT
TTTCAAGGGAAATGTATCATTTTTTGTATCATTTTTGGAAGAATTACACG
CTTTTTTTTTATAAGAATAGTGTACTTTGGTTGAGGGTGAGCATTATTCT
TATTTTTCTATTGTTCTAAACAATAGGCCTATTGTTTTAAACCCGAAATC
TCACCCTGATATTCTTATAGAAGTTATTCTTATAAAAGAAAAAGCGTGTA
TTTGTGTATTCTTGAAGGAAAATTAGGATGCCTTCTCTGTATTTTAGAAC
GAAAATAATAAATCCTTTAATGTATCTTGAAGGAAAATGAGAATTATTTC
GTTGTATTTTTGAAGGAAATTATAAAATATCGATGTATTTTTGAAGGAAA
AATTATTTCGTTGTATTCTTGATGGGAAATTAAAAAATATTCCTTTGTAT
TTTTGAAGGAAAATCAAGAAATATTCCGTTGTATTTTTGAAGAAAAATGA
AGTATAATTGCATGATTGTTGAGAATCTTGGACGAACAAACTCTTGGCCA
CGTTTAATTTCATTATTATTAAATATATTCTTTTCAGATCAGCCTACGTT
TCTTACGGTGGACTGTTGATGAGGCTACAAGGTGACGCGAATAATCTACA
CGGTATGGAAGTTGATCAGCTAATGTATTTGTTGATGAAAAAAATCGCCT
TTTAAGGGATACAAATGGGATACTTTTGGTGTAAAAAGAACATTTAATGA
GGAGAGGTCGAAGAAAGATCATTATTTTGAATCGCAGAGAACGATTTCGA
TGTTAGGCTTTTTGAAGCTATTGAAAAAGTGTTCATTTTAGATCAACTCA
GAAAGACAAACGGATTTCGAATTTGGAGAAATGAAACATGGAATTTTCAA
ATAATTACAGAACATTTTATGTGGATTTTTTGAAATTTGCTACATGATAT
TACTTGTATAAATCTATTATGGTTAACAAGATTGATAATCTAATGAACTC
AAAATATTCACTTTCGTCAAATTTTAAGTGCAAAAAAGTTAGAGAAAAAT
AAAAAAATACTTTTTTAGCTTCCTCGGTTTTCCCACGTTATTCGTTTTAA
ACTTTATACATCTTCTTCCAGTGCGAAATTTCTGTAAATTTCTTGCTGTT
TCTTTGCTTGAATTTGTTTGAAACTTTTTCGTAGTTCTTCCATCACGTGT
TGTTCCCACAATACATTGCGCATTTGATGTTTTGTTAATGGATAAAAGAA
ACAACCAATATTGATCTCTTCTAAAGTGATTCCAGCCAATTTAGCATCGA
GTTTGATACATCCTCCGACTTTCTCTGTCCATTCAATGTTAAAGAAGTCA
ATACACACGCTTGCGTATTTCTCCAAGTGTGGGATACCGGCACAGAGTGG
TGGTGGGTTTCGCACTGAAAAATAAATTATTGAGAGTCAAATCTACCTTG
GAGAATTATTGCCTGGAAAGCTAAGGCTATACTGAGCAATTTTTTCAGGC
GCGTGCAATGCAATAATTGTTGCCAATTGCGCTGCACTCGAAAAGAGTTT
AATTCTAGCCACCAAAAATAAGTTTTGCAATTAATTTTAAAATTTTAAAT
TTCCTTCTCACAGCTTATTTCATCCAGCCAAAAAAATAATTTGTATTACG
AGTGTTTTAAACAATAGGACAAAAGAAGAAAAGTAAACATAAAGAGAATT
TCTCCTCTTTTTTTGATCTGATCTATTTTGTTGCAGCCTCCTGCAATTTT
TTTTTGCGATATTTTTTTGCGTTTTATTGCGTTGCAGAAAAGATTGCAGA
GAATTTGACTAGGCTACAATCTTTTTTTTTCGGGCGCTTGTTGCAAAGAT
TGTGTTGGAAGCGCCTGAAAAAATTGCTCAGTATAGCCTTAGCTTAAGAG
TGGAAAGAAGAAAACAAATTTTATTTTTTGATTTTACTTACGAGAGACTT
TTTCAACGAAAAGAGTGACGTCATCTATGTTGAGCTTCACATCCAATCCC
TGAAAATATACGAAAACTTGTCTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037674XLOC_037674Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059909-exon-scaffold_331-1575043694:821008..821039TCONS_00059909-exon-scaffold_331-1575043694:821008..821039Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1575043694:820614..820709TCONS_00059909-exon-scaffold_331-1575043694:820614..820709Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1575043694:818660..818927TCONS_00059909-exon-scaffold_331-1575043694:818660..818927Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1575043694:817838..817902TCONS_00059909-exon-scaffold_331-1575043694:817838..817902Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1575043694:816462..817648TCONS_00059909-exon-scaffold_331-1575043694:816462..817648Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1510915933:821008..821039TCONS_00059909-exon-scaffold_331-1510915933:821008..821039Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1510915933:820614..820709TCONS_00059909-exon-scaffold_331-1510915933:820614..820709Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1510915933:818660..818927TCONS_00059909-exon-scaffold_331-1510915933:818660..818927Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1510915933:817838..817902TCONS_00059909-exon-scaffold_331-1510915933:817838..817902Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1510915933:816462..817648TCONS_00059909-exon-scaffold_331-1510915933:816462..817648Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1491911889:821008..821039TCONS_00059909-exon-scaffold_331-1491911889:821008..821039Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1491911889:820614..820709TCONS_00059909-exon-scaffold_331-1491911889:820614..820709Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1491911889:818660..818927TCONS_00059909-exon-scaffold_331-1491911889:818660..818927Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1491911889:817838..817902TCONS_00059909-exon-scaffold_331-1491911889:817838..817902Clytia hemisphaericaexon
TCONS_00059909-exon-scaffold_331-1491911889:816462..817648TCONS_00059909-exon-scaffold_331-1491911889:816462..817648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:816462..821039 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.34406	0	0	2.64937e-07	0	0	0	3.48527e-10	1.61769e-08	0	0	0	0	0	0	1.8418e-08	1.21996e-09	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00059909 vs. Swiss-Prot (Human)
Match: RPAB3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)

HSP 1 Score: 221.476 bits (563), Expect = 1.006e-68
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 2 
Query:   56 MAGVVFEDIFDVKDIDPGGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGEKFRLVLATTLREDGTPDDGEYNSADNAPSRADQFEYVMHGKVYRIDAENSGGGDHFGNRLSAYVSYGGLLMRLQGDANNLH 460
            MAG++FEDIFDVKDIDP GKKFDRVSRLHCESESFKMDLILDVN QIYPVDLG+KFRLV+A+TL EDGT DDGEYN  D+ PSRADQFEYVM+GKVYRI+ + +        RLSAYVSYGGLLMRLQGDANNLH
Sbjct:    1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETST--EAATRLSAYVSYGGLLMRLQGDANNLH 133
The following BLAST results are available for this feature:
BLAST of TCONS_00059909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB31.006e-6880.00DNA-directed RNA polymerases I, II, and III subuni... [more]
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