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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059903 ID=TCONS_00059903|Name=TCONS_00059903|organism=Clytia hemisphaerica|type=transcript|length=2280bp
gtaaaagtaTGTGATCGGTCTGCAAATTTTCTTTCCTAAAACTGGCTGAT
GTTGTGTTGATTGCAAAACCCTTATAGACAAGGAGTTAAAGAGGAAGCTA
CAAAACAAATACAAATGATTGATCAAACATTTGACAGTCACATGAGTAGT
AGAGAGaaaaactaTACAAAAATCTAAAAGCGTTTACCTAAAAGACTAAC
CAATCATAATGGATAGTCCAGTATACGATGAGATTCCGCAACATGATCAA
CCATTACCACACCCAAAAGATGAGGAAGCTGCTTTAATCGAGACTACATC
AACTGACTCCCTGGACACGACAGCTACCCATACCAACCGATCCTTGATCT
CACGCATGAATGACACGATACTGGCAACACAGGTCAATCTTCATGAACGA
GTAAGCGATTGGGGTATTCGCACTGAAAATATCCTCGCATTATTCTGGGG
TGGTATTGTCTTCTTTATAGGCTTATCATTCAATATCGCACAATCGAATA
CAAGCCTCGTTGACGATAGTTTCGCCACTATCTATTGGGTTATACTCTCA
TTTATGTTTGTCGGGATCTCATTTATGGCAATCGCCATTCATCATCGAGA
TAATGAAAATGTCTTCATCCAAATGGATAAGGAGCGACTTGAAGGTAATA
ACATCAGAATGTTACAATTCTTAACACGCTGCACTTTTGTTTTTGCATTG
GGATTAAGTTTAATGGATTTCATATCTTTGGTTACTGTTTTCCATTGTGG
ATATGGCAGCGGGGATGTTACCACTACCCAAAGCAACCAGTATGCTGCCA
TCTTGATGTATCATATCGCTAGATTCATCTACGCCTCCTTACAATTGATC
CTACTACAAATATTAGTTGAAAATCGTGTCCGTCGTTCAGGATATTATCA
ATTTTGCATGAAGTTACTATGCGTTCATGTCATCGTTACTAACACGAGTA
TCTGGCTGACCAAATTTAACCAAGAAACGGGACTGTTTGGTAATAAAAAT
CCCACTGGTGAATATGATGCTTTGAACTGCACTCTCCAACTTGATGATTC
ATTTTTCCCAACAGCTAAGTCAATGGATCAACGCTTATACCCATTCATCC
TGGAGTTCTGCCTCCTCTCTTCAGCCTTGTTCTACATCCTGTACCCGTTT
TTAAGTGAGACACAGAAAACAAGACAATCGTCATCAACAGGACCTTACGG
AGGCTATAAATACCAAGCAGTCAATATCATCAAAGATGCTACCCAGAAAT
ACCGTACCTTTCCATCTCTGATTATAGGAGCAAGCATTGCGTTACTCCTT
ATAGTTGCATCCTGGAATTCACAAGATCTTGCGCAGAAGATCCATAATAT
GAGATTTACCTACGCTGTCCAAatccttgttttcattttactCATCATCT
TCTGTCGCGTAGTTTTAACAGAATTAAAAGAACACCATCGTTCTGAACAC
ACCGATCAAAACTATAAAATCGAAGATATTCTTTTGATCTTGTCTGGCCC
ACTTGGATTCTTACCTTTTTGTTTGTTGGTTTTGTTTGCTTCGTTTGCTT
TCAAATCTGGTGATGTACATGACGATTTCCTTACAAAGAATAAGACAGAA
TTGAGAATCTGGTCATCATTCTGGTCTATCACCAGTCTCTTATCTGTGTT
CATTCAAACGCATTTCTTGATCGTAGGACGTAATTTTCGTCGCGACATAG
TGGAGGAACAATCAGGTCGCCACAGCTCTGGTGATCCTGTCAACGAAGAT
GAACATTACGCCAAACGTATCTTTTCAGCATCGAAAATCAGTCAACTTGT
TATTGTAATCTTGTTCTCAAATTTTGGTCTATGGTTTTTGGAATctttct
ttgaaactgattCACCCTTTATTGTGGCGAAAGTTTATTGGGGCGAGCAT
GCGTGGTTGATTATAAGTAAACTATTGTATCCACTTATTGTTTTCTTCAG
ATTCCATTCGGTAGCTATTTTAACTTTCATTTGGTTCAAGTTCAGAGTTA
AATAATCAATATAGTTTCAAAAACttataaattattattttataattaAG
AATTTCACAAGAAAAACagtgaattttattttatacgTTGGATATACCTA
CTTAATAAACTATCACGATCTTCAGGGTTGATGATCTAGTCATGTATGAC
TTGACTATATTGTTACATTCGATTCAATGGTATTTTGATAAACTGCAGGC
AGTTGGCAGTTCAATTTgttgacaaatgaaaaataaattttggaccATCT
TTCTAGAAAAGGCACACTCTGGTATCTTCA Run BLAST on NCBI protein sequence of TCONS_00059903-protein >TCONS_00059903-protein ID=TCONS_00059903-protein|Name=TCONS_00059903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
MDSPVYDEIPQHDQPLPHPKDEEAALIETTSTDSLDTTATHTNRSLISRM
NDTILATQVNLHERVSDWGIRTENILALFWGGIVFFIGLSFNIAQSNTSL
VDDSFATIYWVILSFMFVGISFMAIAIHHRDNENVFIQMDKERLEGNNIR
MLQFLTRCTFVFALGLSLMDFISLVTVFHCGYGSGDVTTTQSNQYAAILM
YHIARFIYASLQLILLQILVENRVRRSGYYQFCMKLLCVHVIVTNTSIWL
TKFNQETGLFGNKNPTGEYDALNCTLQLDDSFFPTAKSMDQRLYPFILEF
CLLSSALFYILYPFLSETQKTRQSSSTGPYGGYKYQAVNIIKDATQKYRT
FPSLIIGASIALLLIVASWNSQDLAQKIHNMRFTYAVQILVFILLIIFCR
VVLTELKEHHRSEHTDQNYKIEDILLILSGPLGFLPFCLLVLFASFAFKS
GDVHDDFLTKNKTELRIWSSFWSITSLLSVFIQTHFLIVGRNFRRDIVEE
QSGRHSSGDPVNEDEHYAKRIFSASKISQLVIVILFSNFGLWFLESFFET
DSPFIVAKVYWGEHAWLIISKLLYPLIVFFRFHSVAILTFIWFKFRVK Run BLAST on NCBI transcript from alignment at scaffold_331:724333..726982- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059903 ID=TCONS_00059903|Name=TCONS_00059903|organism=Clytia hemisphaerica|type=transcript|length=2650bp|location=Sequence derived from alignment at scaffold_331:724333..726982- (Clytia hemisphaerica)
GTAAAAGTATGTGATCGGTCTGCAAATTTTCTTTCCTAAAACTGGCTGAT
GTTGTGTTGATTGCAAAACCCTTATAGACAAGGAGTTAAAGAGGAAGCTA
CAAAACAAATACAAATGATTGATCAAACATTTGACAGTCACATGAGTAGT
AGAGAGGTAAGCACAAAATAAATGTTCCCAATTGAGTTGAAATATAATAT
GTAAAAGGCATTTTGGATAGTGGTCTATTTTGAATTATTTTGGTTTTCAT
AGTTTGTGAGTTGAGATTTTCTATGCAATGTTTTTCGAGGTGGTGTTTTT
ACGGTTACAATTATGCGATCGATTGTATGTATCGATTATAATCCATCATT
AACAAAAAATCCTACTTTGTTTTCTTTCTAAGATGATGGGTCGAAGTTCG
GACATTATCAATTCACTTTCTCTCTTCGATACATATTTTTATCCAACATA
ACCCCTTTGTTTCGCTCAAAGGGTAGAGGACGACGGGACGTTCTTTCAAT
AATTAGTTTATTCTTTTTTTTCATAGAAAAACTATACAAAAATCTAAAAG
CGTTTACCTAAAAGACTAACCAATCATAATGGATAGTCCAGTATACGATG
AGATTCCGCAACATGATCAACCATTACCACACCCAAAAGATGAGGAAGCT
GCTTTAATCGAGACTACATCAACTGACTCCCTGGACACGACAGCTACCCA
TACCAACCGATCCTTGATCTCACGCATGAATGACACGATACTGGCAACAC
AGGTCAATCTTCATGAACGAGTAAGCGATTGGGGTATTCGCACTGAAAAT
ATCCTCGCATTATTCTGGGGTGGTATTGTCTTCTTTATAGGCTTATCATT
CAATATCGCACAATCGAATACAAGCCTCGTTGACGATAGTTTCGCCACTA
TCTATTGGGTTATACTCTCATTTATGTTTGTCGGGATCTCATTTATGGCA
ATCGCCATTCATCATCGAGATAATGAAAATGTCTTCATCCAAATGGATAA
GGAGCGACTTGAAGGTAATAACATCAGAATGTTACAATTCTTAACACGCT
GCACTTTTGTTTTTGCATTGGGATTAAGTTTAATGGATTTCATATCTTTG
GTTACTGTTTTCCATTGTGGATATGGCAGCGGGGATGTTACCACTACCCA
AAGCAACCAGTATGCTGCCATCTTGATGTATCATATCGCTAGATTCATCT
ACGCCTCCTTACAATTGATCCTACTACAAATATTAGTTGAAAATCGTGTC
CGTCGTTCAGGATATTATCAATTTTGCATGAAGTTACTATGCGTTCATGT
CATCGTTACTAACACGAGTATCTGGCTGACCAAATTTAACCAAGAAACGG
GACTGTTTGGTAATAAAAATCCCACTGGTGAATATGATGCTTTGAACTGC
ACTCTCCAACTTGATGATTCATTTTTCCCAACAGCTAAGTCAATGGATCA
ACGCTTATACCCATTCATCCTGGAGTTCTGCCTCCTCTCTTCAGCCTTGT
TCTACATCCTGTACCCGTTTTTAAGTGAGACACAGAAAACAAGACAATCG
TCATCAACAGGACCTTACGGAGGCTATAAATACCAAGCAGTCAATATCAT
CAAAGATGCTACCCAGAAATACCGTACCTTTCCATCTCTGATTATAGGAG
CAAGCATTGCGTTACTCCTTATAGTTGCATCCTGGAATTCACAAGATCTT
GCGCAGAAGATCCATAATATGAGATTTACCTACGCTGTCCAAATCCTTGT
TTTCATTTTACTCATCATCTTCTGTCGCGTAGTTTTAACAGAATTAAAAG
AACACCATCGTTCTGAACACACCGATCAAAACTATAAAATCGAAGATATT
CTTTTGATCTTGTCTGGCCCACTTGGATTCTTACCTTTTTGTTTGTTGGT
TTTGTTTGCTTCGTTTGCTTTCAAATCTGGTGATGTACATGACGATTTCC
TTACAAAGAATAAGACAGAATTGAGAATCTGGTCATCATTCTGGTCTATC
ACCAGTCTCTTATCTGTGTTCATTCAAACGCATTTCTTGATCGTAGGACG
TAATTTTCGTCGCGACATAGTGGAGGAACAATCAGGTCGCCACAGCTCTG
GTGATCCTGTCAACGAAGATGAACATTACGCCAAACGTATCTTTTCAGCA
TCGAAAATCAGTCAACTTGTTATTGTAATCTTGTTCTCAAATTTTGGTCT
ATGGTTTTTGGAATCTTTCTTTGAAACTGATTCACCCTTTATTGTGGCGA
AAGTTTATTGGGGCGAGCATGCGTGGTTGATTATAAGTAAACTATTGTAT
CCACTTATTGTTTTCTTCAGATTCCATTCGGTAGCTATTTTAACTTTCAT
TTGGTTCAAGTTCAGAGTTAAATAATCAATATAGTTTCAAAAACTTATAA
ATTATTATTTTATAATTAAGAATTTCACAAGAAAAACAGTGAATTTTATT
TTATACGTTGGATATACCTACTTAATAAACTATCACGATCTTCAGGGTTG
ATGATCTAGTCATGTATGACTTGACTATATTGTTACATTCGATTCAATGG
TATTTTGATAAACTGCAGGCAGTTGGCAGTTCAATTTGTTGACAAATGAA
AAATAAATTTTGGACCATCTTTCTAGAAAAGGCACACTCTGGTATCTTCA
Coding sequence (CDS) from alignment at scaffold_331:724333..726982- >TCONS_00059903 ID=TCONS_00059903|Name=TCONS_00059903|organism=Clytia hemisphaerica|type=CDS|length=1797bp|location=Sequence derived from alignment at scaffold_331:724333..726982- (Clytia hemisphaerica)
ATGGATAGTCCAGTATACGATGAGATTCCGCAACATGATCAACCATTACC
ACACCCAAAAGATGAGGAAGCTGCTTTAATCGAGACTACATCAACTGACT
CCCTGGACACGACAGCTACCCATACCAACCGATCCTTGATCTCACGCATG
AATGACACGATACTGGCAACACAGGTCAATCTTCATGAACGAGTAAGCGA
TTGGGGTATTCGCACTGAAAATATCCTCGCATTATTCTGGGGTGGTATTG
TCTTCTTTATAGGCTTATCATTCAATATCGCACAATCGAATACAAGCCTC
GTTGACGATAGTTTCGCCACTATCTATTGGGTTATACTCTCATTTATGTT
TGTCGGGATCTCATTTATGGCAATCGCCATTCATCATCGAGATAATGAAA
ATGTCTTCATCCAAATGGATAAGGAGCGACTTGAAGGTAATAACATCAGA
ATGTTACAATTCTTAACACGCTGCACTTTTGTTTTTGCATTGGGATTAAG
TTTAATGGATTTCATATCTTTGGTTACTGTTTTCCATTGTGGATATGGCA
GCGGGGATGTTACCACTACCCAAAGCAACCAGTATGCTGCCATCTTGATG
TATCATATCGCTAGATTCATCTACGCCTCCTTACAATTGATCCTACTACA
AATATTAGTTGAAAATCGTGTCCGTCGTTCAGGATATTATCAATTTTGCA
TGAAGTTACTATGCGTTCATGTCATCGTTACTAACACGAGTATCTGGCTG
ACCAAATTTAACCAAGAAACGGGACTGTTTGGTAATAAAAATCCCACTGG
TGAATATGATGCTTTGAACTGCACTCTCCAACTTGATGATTCATTTTTCC
CAACAGCTAAGTCAATGGATCAACGCTTATACCCATTCATCCTGGAGTTC
TGCCTCCTCTCTTCAGCCTTGTTCTACATCCTGTACCCGTTTTTAAGTGA
GACACAGAAAACAAGACAATCGTCATCAACAGGACCTTACGGAGGCTATA
AATACCAAGCAGTCAATATCATCAAAGATGCTACCCAGAAATACCGTACC
TTTCCATCTCTGATTATAGGAGCAAGCATTGCGTTACTCCTTATAGTTGC
ATCCTGGAATTCACAAGATCTTGCGCAGAAGATCCATAATATGAGATTTA
CCTACGCTGTCCAAATCCTTGTTTTCATTTTACTCATCATCTTCTGTCGC
GTAGTTTTAACAGAATTAAAAGAACACCATCGTTCTGAACACACCGATCA
AAACTATAAAATCGAAGATATTCTTTTGATCTTGTCTGGCCCACTTGGAT
TCTTACCTTTTTGTTTGTTGGTTTTGTTTGCTTCGTTTGCTTTCAAATCT
GGTGATGTACATGACGATTTCCTTACAAAGAATAAGACAGAATTGAGAAT
CTGGTCATCATTCTGGTCTATCACCAGTCTCTTATCTGTGTTCATTCAAA
CGCATTTCTTGATCGTAGGACGTAATTTTCGTCGCGACATAGTGGAGGAA
CAATCAGGTCGCCACAGCTCTGGTGATCCTGTCAACGAAGATGAACATTA
CGCCAAACGTATCTTTTCAGCATCGAAAATCAGTCAACTTGTTATTGTAA
TCTTGTTCTCAAATTTTGGTCTATGGTTTTTGGAATCTTTCTTTGAAACT
GATTCACCCTTTATTGTGGCGAAAGTTTATTGGGGCGAGCATGCGTGGTT
GATTATAAGTAAACTATTGTATCCACTTATTGTTTTCTTCAGATTCCATT
CGGTAGCTATTTTAACTTTCATTTGGTTCAAGTTCAGAGTTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059903-exon-scaffold_331-1575043694:726827..726982 | TCONS_00059903-exon-scaffold_331-1575043694:726827..726982 | Clytia hemisphaerica | exon |
| TCONS_00059903-exon-scaffold_331-1575043694:724333..726456 | TCONS_00059903-exon-scaffold_331-1575043694:724333..726456 | Clytia hemisphaerica | exon |
| TCONS_00059903-exon-scaffold_331-1510915933:726827..726982 | TCONS_00059903-exon-scaffold_331-1510915933:726827..726982 | Clytia hemisphaerica | exon |
| TCONS_00059903-exon-scaffold_331-1510915933:724333..726456 | TCONS_00059903-exon-scaffold_331-1510915933:724333..726456 | Clytia hemisphaerica | exon |
| TCONS_00059903-exon-scaffold_331-1491911889:726827..726982 | TCONS_00059903-exon-scaffold_331-1491911889:726827..726982 | Clytia hemisphaerica | exon |
| TCONS_00059903-exon-scaffold_331-1491911889:724333..726456 | TCONS_00059903-exon-scaffold_331-1491911889:724333..726456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:724333..726982 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004878 | Otopetrin |
Blast
The following BLAST results are available for this feature:
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