TCONS_00059899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059899
Unique NameTCONS_00059899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059899 ID=TCONS_00059899|Name=TCONS_00059899|organism=Clytia hemisphaerica|type=transcript|length=847bp
AAAGTTACATCCAGtggttgtcaaacaatcaaCAAGCAACCCAAAATAAC
CTCCAGTGGTTGTCAAGCAAATGTTTATTGGTACATCGAGGATAAGAACC
CATTGAATGTTGGAGGCTTTGGTTTACCTAAGgacaTGCGCATGCGCATG
TAAACAGGAAGTTCAAACCAAGGGGTAGATGGAGCTCCGTAGCCCGGGAG
GGCAGTCCGTCTGGGAGAGGCTGAATTCCAAAATGAAACGCAAGGGCGGA
TGAGGCTCTACAGTCGTGGAAGACAGCTCATCTAGGAGACGGAGAACTCT
GAATTCAAACCTATAAACGTAAAAACATCATCGAAAGAAGATTCGAAATA
CAACCAAAACAAGGAAATCGAATACGAAAAGTGTTGCTTTGACACACCAT
CATTAATAGCCGACATCCTTGTCTTCCAAAGACATACTTATATTAAGCAT
CAAAGGGCAGGTAGAATAGATTGAAAAATGACGTAACACCATGAAGTAGG
GCGGTGATCATCAAGCACAAAATCGTATCCAGAAACAACAATAAACCAGT
TTACAACTCAATAGCAAGACATAAAGAAATACAACATCCTGTAAGAAGAG
TATTGGCCAAAGAACCTTCACAGAACAACAGAGAGGTCGAGCTAAGAGAT
AACGAGGAAGAATGACCATTGCCAACTTAGTATCTTTTAGTTCAGCAGAA
TGAAATACTCCATCACTTCAAGACTCTCTATTGACTATAAAAAAGCCAAC
ACAACATCAAGTTAAACTTATTTCAGTCGATACTATATAACATCTAAGCT
GTTCGAACAGACTGTTAAAAAATGATATAACATAATCTGGATTGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_331:615225..617592-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059899 ID=TCONS_00059899|Name=TCONS_00059899|organism=Clytia hemisphaerica|type=transcript|length=2368bp|location=Sequence derived from alignment at scaffold_331:615225..617592- (Clytia hemisphaerica)
AAAGTTACATCCAGTGGTTGTCAAACAATCAACAAGCAACCCAAAATAAC
CTCCAGTGGTTGTCAAGCAAATGTTTATTGGTACATCGAGGATAAGAACC
CATTGAATGTTGGAGGCTTTGGTTTACCTAAGGTATTTAAATAATTTCCA
CCTCTTATCGTATAAGTAGTAATAAAGAATATAATCTACCTCTGGCTAAA
CTCTGCTTTTAGACTGCACTTGACAAGGTTACCATTATGGGAAAAATAAT
ACCAAAGTTTTTGAGTTTTGCGTTGAAAAACATAATTAAGAATGGAAAAT
CAACAAGTTTGCAACCCTGTTTGAAATGAAAATCATTATCTTGAATCTTC
ACGATTGGATTAAGCAAAACTAAAATTTATGGTACTCAGGTAAGTTATGG
CATGTCTCAAAAACATGAAAATTACCATAATTTTTGGAAAGCATTAGCCG
GCAGAAAATGAGCAAACTAATGATTTAATACGAAGGGTACCATGATGAAG
TTTCCGTGTAGTGATGTTACCTAATTGTTTACGTCCTCATGTTCTGACGT
CAGCAAAACTTGTTTCTTAAATAAGTCCAGTTTGGTTAATGGTAGAAACA
TGAAATTTGAAATAAAGTTGCACATCATTAAAAGGATCATTTTGCAAAAA
AAAGATTCAAACTTTGCTGTTGTCAGCAGAAATCAGCAAAATACGAAATT
TTGCAAAAAAGTGATGACGTCAGCAAAATTTCACAAAACATAATCTTCAC
AAAATATATTCCATTGTTCCCTAGATGATAATAAGATTTTTAAATCAAGT
TCAAATTAGGGAGAGCTGAACCAATTTCCTGTATTTCCTACTTTTAGGAT
CTCAAAAAGCGATCACGAAAAAGCAAGGACCAAAAGCCAAACAACAACCG
TGTTTTTGGCGGCCCAAAGAAGGGCAATAAAGCTGCTTTCAAACCATCAC
AAGCGGCTACAACAAACAAAGGTGGCTTCAGACTTCCTACCGTAAGTATT
TCGCCTCATCTCACATAATATTGATTGCTCAATTTTTTGGTCCTGTACCA
GGACCTGGGAGCGCCGCAATCCGTACCGCTCTGTTTTTTGATAATATCCG
AATAAAAAACTAAGTCGTTAAGAAAACAAGTACATCTACGCGCATTTGAA
ATAAAAAAATCGACAATTTGAAGTTACCGAGTGATGGTATTTATGGTTTA
ATGAAGAAATGAATAAATTATTTTTATTACAAATTTCTTTTGGAAATTGT
AGGCAGTGCCTACCAGTCTAAGGACAAAATACATTAACAGTCTTAACTGA
AAGTTCTTACCAGGATTTCTTTAGAAATAATATATCCCGCTCGAAAAGCA
TTAGTATAAACTTTAGTATACACCTTTTCGACCGTAGCCGCCAATTGCCA
CGCAGGCATTTTTTTACGTCGTAACAACCCTAAAACCATGCCAGTTTTTT
GCCGCACTTATAGACAATAGAAAAAGGTGTATAAAAGGTCGAGTTAGATC
GAGTTTAGGGGGGAGGGTAATTAAATAATAAAGTGGCACGCGCCTGACGG
CGCGACTACAGTCGAAAAGGTGTATTAAGAAAACAAAGAATAGTCTAAAA
TACACTTCGAAAAAAAGGATTCATGTAACATTAATCTTGATTTTTATTTT
TAGGACATGCGCATGCGCATGTAAACAGGAAGTTCAAACCAAGGGGTAGA
TGGAGCTCCGTAGCCCGGGAGGGCAGTCCGTCTGGGAGAGGCTGAATTCC
AAAATGAAACGCAAGGGCGGATGAGGCTCTACAGTCGTGGAAGACAGCTC
ATCTAGGAGACGGAGAACTCTGAATTCAAACCTATAAACGTAAAAACATC
ATCGAAAGAAGATTCGAAATACAACCAAAACAAGGAAATCGAATACGAAA
AGTGTTGCTTTGACACACCATCATTAATAGCCGACATCCTTGTCTTCCAA
AGACATACTTATATTAAGCATCAAAGGGCAGGTAGAATAGATTGAAAAAT
GACGTAACACCATGAAGTAGGGCGGTGATCATCAAGCACAAAATCGTATC
CAGAAACAACAATAAACCAGTTTACAACTCAATAGCAAGACATAAAGAAA
TACAACATCCTGTAAGAAGAGTATTGGCCAAAGAACCTTCACAGAACAAC
AGAGAGGTCGAGCTAAGAGATAACGAGGAAGAATGACCATTGCCAACTTA
GTATCTTTTAGTTCAGCAGAATGAAATACTCCATCACTTCAAGACTCTCT
ATTGACTATAAAAAAGCCAACACAACATCAAGTTAAACTTATTTCAGTCG
ATACTATATAACATCTAAGCTGTTCGAACAGACTGTTAAAAAATGATATA
ACATAATCTGGATTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037666XLOC_037666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059899-exon-scaffold_331-1575043694:617461..617592TCONS_00059899-exon-scaffold_331-1575043694:617461..617592Clytia hemisphaericaexon
TCONS_00059899-exon-scaffold_331-1575043694:615225..615939TCONS_00059899-exon-scaffold_331-1575043694:615225..615939Clytia hemisphaericaexon
TCONS_00059899-exon-scaffold_331-1510915933:617461..617592TCONS_00059899-exon-scaffold_331-1510915933:617461..617592Clytia hemisphaericaexon
TCONS_00059899-exon-scaffold_331-1510915933:615225..615939TCONS_00059899-exon-scaffold_331-1510915933:615225..615939Clytia hemisphaericaexon
TCONS_00059899-exon-scaffold_331-1491911889:617461..617592TCONS_00059899-exon-scaffold_331-1491911889:617461..617592Clytia hemisphaericaexon
TCONS_00059899-exon-scaffold_331-1491911889:615225..615939TCONS_00059899-exon-scaffold_331-1491911889:615225..615939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:615225..617592 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0161716	0	0	0.335783	0	0.164558	0	0	0	0	0	0	0	0	0	0	0.119417	0	0	0	0.366385	0.491047	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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