TCONS_00059886 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059886
Unique Name	TCONS_00059886
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1050

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_331:285217..290061-
coding sequence from alignment at scaffold_331:285217..290061-

transcript sequence

>TCONS_00059886 ID=TCONS_00059886|Name=TCONS_00059886|organism=Clytia hemisphaerica|type=transcript|length=1050bp
CCAGGTTAGAAACTTTGAAAATAGTACAAAAATGACTTGATTGCAGAAGC
ACCCAAATTCTGATCGAACAACTAAATGTCTTTTGAAATGGATCGTGTTG
AGAAAGGGAAAGAGGAAGGTGAAAATTCTGATCTTTACTCTTATGATGCA
AGTAGTAATCACAAGGCCAATAATGATCGTCGAAAAGCAGACCTTTGTTG
TTGTGCATGTCTACCAAAACGTTACCTGGTCGCTATCATGGCTTTTTTTG
GATTTGTTAATGTTTATGCATTGCGAGTAAATCTTAGTGTAGCTATGGTG
GCAATGGTATCTAATAGGACAGCCAAATATGCAAATGGGACTGAGTATAC
TGTgAGTCCAGAACTTGACTGGAGTCCAAAACTTCAAGGATTTGTTCTTA
GTTCATTTTTCTATGGTTATATTATCACACAAATACCTGGTGGTTGGCTT
GCTACAAAATATGGTGGTAAAAACTTGTTTGGTTGTGGTGTCCTAATGAC
GGCTCTTTTTACATTGATTACACCACCTGCAGCTAGATGTAATGTTTATT
TACTGGTGGCCGTAAGAATGGCGGAAGGATTATTCGAGGGTGTAACATTC
CCAAGCATTTATGCAATCTGGAGAAAATGGGCTCCACCTTTAGAAAGAAG
TAAACTTGCAACAATCTCATTTTCAGGACCCTTTGCTGGGACAGTACTAG
GAATGCCACTATCAGGTGTTATTGCTAATTCCTTTGGATGGCCATGGGTC
TTTTATACTTTTGGATTGTTTGGTGTGATTTGGAGTTTCTTTTGGTTTGC
ACTGGTGACAGAATCTCCTTGTGATCATCCGAAAATCTCTAAAGAAGAAT
TAGATTACATTCAAAACTCTTTGAAGGAAGATAAACCGGAAAAACAGGTT
GAAAATATACCTTGGAAAGACTTTATAACCTCGTTGCCAGTATGGGCAAT
CATTATTGCACACATGACCGAAAACTGGGGATGGTACACATTATTGACAC
AACTTCCAACATATCTGAAAAGCGTGCTGGATTTTAATCTACAAGCTGTA

Run BLAST on NCBI

protein sequence of TCONS_00059886-protein

>TCONS_00059886-protein ID=TCONS_00059886-protein|Name=TCONS_00059886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSFEMDRVEKGKEEGENSDLYSYDASSNHKANNDRRKADLCCCACLPKRY
LVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGTEYTVSPELDWS
PKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLITP
PAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISFS
GPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTESPCD
HPKISKEELDYIQNSLKEDKPEKQVENIPWKDFITSLPVWAIIIAHMTEN
WGWYTLLTQLPTYLKSVLDFNLQAV

Run BLAST on NCBI

transcript from alignment at scaffold_331:285217..290061-

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059886 ID=TCONS_00059886|Name=TCONS_00059886|organism=Clytia hemisphaerica|type=transcript|length=4845bp|location=Sequence derived from alignment at scaffold_331:285217..290061- (Clytia hemisphaerica)
CCAGGTTAGAAACTTTGAAAATAGTACAAAAATGACTTGATTGCAGAAGC
ACCCAAATTCTGATCGAACAACTAAATGTCTTTTGAAATGGATCGTGTTG
AGAAAGGGAAAGAGGAAGGTGAAAATTCTGATCTTTACTCTTATGATGCA
AGTAGTAATCACAAGGCCAATAATGATCGTCGAAAAGCAGACCTTTGTTG
TTGTGCATGTCTACCAAAACGTTACCTGGTCGCTATCATGGCTTTTTTTG
GATTTGTTAATGTTTATGCATTGCGAGTAAATCTTAGTGTAGCTATGGTG
GCAATGGTATCTAATAGGACAGCCAAATATGCAAATGGGACTGAGTATAC
TGTGGTAAGTTTTTAAAATTTTATCAGGGTTTTGGAACTCGAGCTTGTTT
TAAGAAAACAGCATTTAGTAGGGTGATTTCATTTTGAAAAACCTTCATAT
GCTTGAAGTTTGAATTAAGACCAGCGTCCGAGATTCAAAAAGGGCCTTAA
AAATGGTTTTCGCAGGGCACCCTTTAGATCAGGGCAAATTTTTGATATTA
TGCTCCTAATAGGGTGTAGAATTGACAAAAAAAATTTGCCCTTCGAATCT
CCTGCAGTTTTCGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCC
TGCAGTTTTCGAGTGAATCGATTTTTAGTTAATCGATAGAACTTATCAAG
GGTCCCCCCTTTACTAACGGTTTTTTCGAAGTCTGAAAATCAAATATCTG
AGAGAACCAACAGATTCAGCGTGAAAAGTAGATAAAGAAAATGGGGTTAT
TTGTTAAGTTTCGACCACCTGGTGCCGAGAAATGGCATTTTTAAGGCGAT
AAATCAACGTTTTTGGCGTTTTTCGATGACGTCAGCATTTTCCTAGGAGC
ATTTTCAGAAAAAATCATTCCCACAAAGCTGGATAGCCCTGAATTAGTAG
TATCCAAAAATGGTATGGTTTGTTAACTTTCGATGTCTAGATCTCGAGAT
ATTTTGGTTTAAATATTGAAAATTATCGATNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTCTACAC
CCTATTAGGAGCATAATATCAAAAATTTGCCCTGATCTAAGGGGTGCCCT
ACGAAGTGACACAATCCACTGCCTCGGCCGCTGGTCTATCAGTAAAAAAT
GTTATTTCAGCCTTCTGATTACAGGGCTGTATTTTTCCTTTTTCTTAAGC
AGAGCTCTAAACTCTGATTTGAGAAAGAGTTGTAACTTCTTGATCCAGTT
TTAGAAAAATTCTTCTTTTATTAATAAAGATGGTTTATAATTCTCTATAC
TTCCCTTCGAAATTCTTTTTACAGAGTCCAGAACTTGACTGGAGTCCAAA
ACTTCAAGGTATTGATATTGTAATTTCTTTAAAGCTACTCATACTTTCTT
TAATTCAGCCTCTGAGTTTCAAGATAGGCACAGATCTTCATTAAATAAAA
CAACTTGGTTCTGCAAATAAGTGAATAGTCATATATTCATTGCTTAAGTT
ATCATTATGCTTACTAAGGTCATTATAACAAGTCAATAGCAATGAACTTG
ACCANAATAATAATAATAAGTCAATAGCAAGACATATAGTCGAATGAACT
TGACCAAAGCAATGTTAATTTTTATTGTTAAACATGTTTCGATATACTAA
TATCATCATCAGTAATTATTATAGTGTTCTAAAAATAAATAAAAATTGGG
ATATTAAAAGTGTAAGCATAATTGTAAAATGAGACGAAGTACAAGGACAA
AATCCAGATAAGTCAAACTATCAAATCAAGGTCATTAATATGTCTTTCTT
TTTCAGGATTTGTTCTTAGTTCATTTTTCTATGGTTATATTATCACACAA
ATACCTGGTGGTTGGCTTGCTACAAAATATGGTGGTAAAAACTTGTTTGG
TTGTGGTGTCCTAATGACGGCTCTTTTTACATTGATTACACCACCTGCAG
CTAGATGTAATGTTTATTTACTGGTGGCCGTAAGAATGGCGGAAGGATTA
TTCGAGGTTAACAATTTTTTTATCTTATCATAGTGAATTTTTAGAATGAA
AATTATTATTCTGGATTCTCTAATTCTGTAAATAATGTTTAAGAGGAGAT
CGTAATCCTCTGTGTGAATGAGTATTATTATTAGGTTATTGTAGATTTCA
CCCCTTTTGGAATGCAATATTAAGCAGATATTCGACAATAAAAATCAGAT
ATCGAAAATTATTCAGTCGACCTTGATGATATTCATTAATATGAATAATG
AATATCATTAAAGCGAGACTGAATAATTTGGATATCCAATTTTTCACGTT
GAACATATGGTTTATCGTTCACCAATTAGCAGAAAAACATTTTAATTTTT
CCCTATTTCATTCAGTCTTCCCTCTTTGTAAGACATTTTCGAACGTTTTT
CTTATTTAAGGATGTCAATTTCATTGGTTTTTTTCTCTTTCATTATAAAA
CGTTCAAATTTCCTTTCTCTTTTGTTAAAAAGAACTTCCTTTTATCTGTT
TTTATATATGTGACATTTAAATAATTATTAGATGAAAAATCTATTTTCTT
TATGCTCGTTGCTACAGAAGAGATATTTTGCTATTGTTTGCTATTGCTAA
ATATTACTAGAAATATCGACTTTTCAGGGTGTAACATTCCCAAGCATTTA
TGCAATCTGGAGAAAATGGGCTCCACCTTTAGAAAGAAGTAAACTTGCAA
CAATCTCATTTTCAGGTTTGAATTGTGATAATTAATTTTTGTTTTTTTTT
CAAAGTTTTTGACATTGCTTTTAGAATTTTAAAGTCAACTTGTGCGTGAG
TATAGTCCAACATACTCCAATGTGGAGTTCTGTTTAAAATTTGAACAAAC
ATTTTTAGTTTACAACACGTCTGAAACAAAGAATAACATAATAAAGAGCT
GGTCTAGAATAGCCTCATTTAATATCAAATTCATAATGATTGAAGTAAAT
TAAATGTTTCAATACGTCCATTTTAACTGTCGAATCGTTTTCATTATATA
CAGGACCCTTTGCTGGGACAGTACTAGGAATGCCACTATCAGGTGTTATT
GCTAATTCCTTTGGATGGCCATGGGTCTTTTATACTTTTGGTAGGTTTGT
ATAAATAACTACTGCAATAATATTTTATATTGGACGATGAGAAGGATTTG
AGGCCGTCTATGTATATGGTGTTGTTTTTTTATATTTCTAAAAATCTAGG
TGCTTAGTTGTTGTTTGTCAATGATACTACAATAATATTGATATAGGAAA
ATGAATAGAAAACAAAATAATAACGAAACTTCTGATATTTTTAATAATAC
GTTACGTTGCTTTCACCAGTATGGAAGCAAATATTTGATTTATTATTTAT
CTCATTGCTTCTTTAGGATTGTTTGGTGTGATTTGGAGTTTCTTTTGGTT
TGCACTGGTGACAGAATCTCCTTGTGATCATCCGAAAATCTCTAAAGAAG
AATTAGATTACATTCAAAACTCTTTGAAGGAAGATAAACCGGAAAAACAG
GTAACTTTTTGAAAGTTTATTTTTTCGCCGTTATAGTCTTTTTGGCAAAT
TACCGATGTTTTGAGAGTTACAATACAAGTTTAAATCTAAACCTTTATTA
AATCATGACATATGTTTTCACAACTGATAAAAAAGGAAAGGCCTATCATA
CTTTGAGACTTGATATTTATTCACGATGAAAAATTTGAAAAAAAACTTTT
TTCACACACAATGTACTGTTTGATTACAGATTACTGATTGAATAGAGAAT
CTTGTTGCAATTTTTTTGTAATGATGAATTTGAAAATCCTGTTCTCCAAA
AATGCCATCCATTCGCTTTCATTTTTCAAGGTTGAAAATATTAAAAAATT
ACAAGTCTAAAGATTGATCTTCACACATTATTATAAAGCGTTTATACAGG
ATTACATTTTGTATAAATACTACCCTAAATACTACCCTAATTCTTTACAA
TTCATTCAAATTTTCCACATAAAAGCATTTATCATTTCTCTTTTGATAAC
TGACGATCCCATAAAACTTGAAGTATTATCATAATAGCATACCGCAGTGA
TTCTAAAAATAGACATCAAAAATTACTGTTTGTCTAAGTTTTAATCCCAT
CATCCTTTGCATTAATTGCTTTTGCAAGTCAATCACACTTATTGACAATA
CAAAAGTAATAACTTGCACTCATTACGAATCAAGATGAAAAGGATTGTGG
GATTGAATTTCGGTCAAATGTTAAAAGTATTAATTATGACGTTTGCATAA
TGGTGTGCTATTCAAACTTTGTTTTTTTTCTTGTACATAAAGGTTGAAAA
TATACCTTGGAAAGACTTTATAACCTCGTTGCCAGTATGGGCAATCATTA
TTGCACACATGACCGAAAACTGGGGATGGTACACATTATTGACACAACTT
CCAACATATCTGAAAAGCGTGCTGGATTTTAATCTACAAGCTGTA

Coding sequence (CDS) from alignment at scaffold_331:285217..290061-

>TCONS_00059886 ID=TCONS_00059886|Name=TCONS_00059886|organism=Clytia hemisphaerica|type=CDS|length=6825bp|location=Sequence derived from alignment at scaffold_331:285217..290061- (Clytia hemisphaerica)
GTTGAAAATATACCTTGGAAAGACTTTATAACCTCGTTGCCAGTATGGGC
AATCATTATTGCACACATGACCGAAAACTGGGGATGGTACACATTATTGA
CACAACTTCCAACATATCTGAAAAGCGTGCTGGATTTTAATCTACAAGCT
GTAGATTGTTTGGTGTGATTTGGAGTTTCTTTTGGTTTGCACTGGTGACA
GAATCTCCTTGTGATCATCCGAAAATCTCTAAAGAAGAATTAGATTACAT
TCAAAACTCTTTGAAGGAAGATAAACCGGAAAAACAGGACCCTTTGCTGG
GACAGTACTAGGAATGCCACTATCAGGTGTTATTGCTAATTCCTTTGGAT
GGCCATGGGTCTTTTATACTTTTGGGTGTAACATTCCCAAGCATTTATGC
AATCTGGAGAAAATGGGCTCCACCTTTAGAAAGAAGTAAACTTGCAACAA
TCTCATTTTCAGGATTTGTTCTTAGTTCATTTTTCTATGGTTATATTATC
ACACAAATACCTGGTGGTTGGCTTGCTACAAAATATGGTGGTAAAAACTT
GTTTGGTTGTGGTGTCCTAATGACGGCTCTTTTTACATTGATTACACCAC
CTGCAGCTAGATGTAATGTTTATTTACTGGTGGCCGTAAGAATGGCGGAA
GGATTATTCGAGAGTCCAGAACTTGACTGGAGTCCAAAACTTCAAGATGT
CTTTTGAAATGGATCGTGTTGAGAAAGGGAAAGAGGAAGGTGAAAATTCT
GATCTTTACTCTTATGATGCAAGTAGTAATCACAAGGCCAATAATGATCG
TCGAAAAGCAGACCTTTGTTGTTGTGCATGTCTACCAAAACGTTACCTGG
TCGCTATCATGGCTTTTTTTGGATTTGTTAATGTTTATGCATTGCGAGTA
AATCTTAGTGTAGCTATGGTGGCAATGGTATCTAATAGGACAGCCAAATA
TGCAAATGGGACTGAGTATACTGTGGTTGAAAATATACCTTGGAAAGACT
TTATAACCTCGTTGCCAGTATGGGCAATCATTATTGCACACATGACCGAA
AACTGGGGATGGTACACATTATTGACACAACTTCCAACATATCTGAAAAG
CGTGCTGGATTTTAATCTACAAGCTGTAGATTGTTTGGTGTGATTTGGAG
TTTCTTTTGGTTTGCACTGGTGACAGAATCTCCTTGTGATCATCCGAAAA
TCTCTAAAGAAGAATTAGATTACATTCAAAACTCTTTGAAGGAAGATAAA
CCGGAAAAACAGGACCCTTTGCTGGGACAGTACTAGGAATGCCACTATCA
GGTGTTATTGCTAATTCCTTTGGATGGCCATGGGTCTTTTATACTTTTGG
GTGTAACATTCCCAAGCATTTATGCAATCTGGAGAAAATGGGCTCCACCT
TTAGAAAGAAGTAAACTTGCAACAATCTCATTTTCAGGATTTGTTCTTAG
TTCATTTTTCTATGGTTATATTATCACACAAATACCTGGTGGTTGGCTTG
CTACAAAATATGGTGGTAAAAACTTGTTTGGTTGTGGTGTCCTAATGACG
GCTCTTTTTACATTGATTACACCACCTGCAGCTAGATGTAATGTTTATTT
ACTGGTGGCCGTAAGAATGGCGGAAGGATTATTCGAGAGTCCAGAACTTG
ACTGGAGTCCAAAACTTCAAGATGTCTTTTGAAATGGATCGTGTTGAGAA
AGGGAAAGAGGAAGGTGAAAATTCTGATCTTTACTCTTATGATGCAAGTA
GTAATCACAAGGCCAATAATGATCGTCGAAAAGCAGACCTTTGTTGTTGT
GCATGTCTACCAAAACGTTACCTGGTCGCTATCATGGCTTTTTTTGGATT
TGTTAATGTTTATGCATTGCGAGTAAATCTTAGTGTAGCTATGGTGGCAA
TGGTATCTAATAGGACAGCCAAATATGCAAATGGGACTGAGTATACTGTG
GTTGAAAATATACCTTGGAAAGACTTTATAACCTCGTTGCCAGTATGGGC
AATCATTATTGCACACATGACCGAAAACTGGGGATGGTACACATTATTGA
CACAACTTCCAACATATCTGAAAAGCGTGCTGGATTTTAATCTACAAGCT
GTAGATTGTTTGGTGTGATTTGGAGTTTCTTTTGGTTTGCACTGGTGACA
GAATCTCCTTGTGATCATCCGAAAATCTCTAAAGAAGAATTAGATTACAT
TCAAAACTCTTTGAAGGAAGATAAACCGGAAAAACAGGACCCTTTGCTGG
GACAGTACTAGGAATGCCACTATCAGGTGTTATTGCTAATTCCTTTGGAT
GGCCATGGGTCTTTTATACTTTTGGGTGTAACATTCCCAAGCATTTATGC
AATCTGGAGAAAATGGGCTCCACCTTTAGAAAGAAGTAAACTTGCAACAA
TCTCATTTTCAGGATTTGTTCTTAGTTCATTTTTCTATGGTTATATTATC
ACACAAATACCTGGTGGTTGGCTTGCTACAAAATATGGTGGTAAAAACTT
GTTTGGTTGTGGTGTCCTAATGACGGCTCTTTTTACATTGATTACACCAC
CTGCAGCTAGATGTAATGTTTATTTACTGGTGGCCGTAAGAATGGCGGAA
GGATTATTCGAGAGTCCAGAACTTGACTGGAGTCCAAAACTTCAAGATGT
CTTTTGAAATGGATCGTGTTGAGAAAGGGAAAGAGGAAGGTGAAAATTCT
GATCTTTACTCTTATGATGCAAGTAGTAATCACAAGGCCAATAATGATCG
TCGAAAAGCAGACCTTTGTTGTTGTGCATGTCTACCAAAACGTTACCTGG
TCGCTATCATGGCTTTTTTTGGATTTGTTAATGTTTATGCATTGCGAGTA
AATCTTAGTGTAGCTATGGTGGCAATGGTATCTAATAGGACAGCCAAATA
TGCAAATGGGACTGAGTATACTGTGGTTGAAAATATACCTTGGAAAGACT
TTATAACCTCGTTGCCAGTATGGGCAATCATTATTGCACACATGACCGAA
AACTGGGGATGGTACACATTATTGACACAACTTCCAACATATCTGAAAAG
CGTGCTGGATTTTAATCTACAAGCTGTAGATTGTTTGGTGTGATTTGGAG
TTTCTTTTGGTTTGCACTGGTGACAGAATCTCCTTGTGATCATCCGAAAA
TCTCTAAAGAAGAATTAGATTACATTCAAAACTCTTTGAAGGAAGATAAA
CCGGAAAAACAGGACCCTTTGCTGGGACAGTACTAGGAATGCCACTATCA
GGTGTTATTGCTAATTCCTTTGGATGGCCATGGGTCTTTTATACTTTTGG
GTGTAACATTCCCAAGCATTTATGCAATCTGGAGAAAATGGGCTCCACCT
TTAGAAAGAAGTAAACTTGCAACAATCTCATTTTCAGGATTTGTTCTTAG
TTCATTTTTCTATGGTTATATTATCACACAAATACCTGGTGGTTGGCTTG
CTACAAAATATGGTGGTAAAAACTTGTTTGGTTGTGGTGTCCTAATGACG
GCTCTTTTTACATTGATTACACCACCTGCAGCTAGATGTAATGTTTATTT
ACTGGTGGCCGTAAGAATGGCGGAAGGATTATTCGAGAGTCCAGAACTTG
ACTGGAGTCCAAAACTTCAAGATGTCTTTTGAAATGGATCGTGTTGAGAA
AGGGAAAGAGGAAGGTGAAAATTCTGATCTTTACTCTTATGATGCAAGTA
GTAATCACAAGGCCAATAATGATCGTCGAAAAGCAGACCTTTGTTGTTGT
GCATGTCTACCAAAACGTTACCTGGTCGCTATCATGGCTTTTTTTGGATT
TGTTAATGTTTATGCATTGCGAGTAAATCTTAGTGTAGCTATGGTGGCAA
TGGTATCTAATAGGACAGCCAAATATGCAAATGGGACTGAGTATACTGTG
GTTGAAAATATACCTTGGAAAGACTTTATAACCTCGTTGCCAGTATGGGC
AATCATTATTGCACACATGACCGAAAACTGGGGATGGTACACATTATTGA
CACAACTTCCAACATATCTGAAAAGCGTGCTGGATTTTAATCTACAAGCT
GTAGATTGTTTGGTGTGATTTGGAGTTTCTTTTGGTTTGCACTGGTGACA
GAATCTCCTTGTGATCATCCGAAAATCTCTAAAGAAGAATTAGATTACAT
TCAAAACTCTTTGAAGGAAGATAAACCGGAAAAACAGGACCCTTTGCTGG
GACAGTACTAGGAATGCCACTATCAGGTGTTATTGCTAATTCCTTTGGAT
GGCCATGGGTCTTTTATACTTTTGGGTGTAACATTCCCAAGCATTTATGC
AATCTGGAGAAAATGGGCTCCACCTTTAGAAAGAAGTAAACTTGCAACAA
TCTCATTTTCAGGATTTGTTCTTAGTTCATTTTTCTATGGTTATATTATC
ACACAAATACCTGGTGGTTGGCTTGCTACAAAATATGGTGGTAAAAACTT
GTTTGGTTGTGGTGTCCTAATGACGGCTCTTTTTACATTGATTACACCAC
CTGCAGCTAGATGTAATGTTTATTTACTGGTGGCCGTAAGAATGGCGGAA
GGATTATTCGAGAGTCCAGAACTTGACTGGAGTCCAAAACTTCAAGATGT
CTTTTGAAATGGATCGTGTTGAGAAAGGGAAAGAGGAAGGTGAAAATTCT
GATCTTTACTCTTATGATGCAAGTAGTAATCACAAGGCCAATAATGATCG
TCGAAAAGCAGACCTTTGTTGTTGTGCATGTCTACCAAAACGTTACCTGG
TCGCTATCATGGCTTTTTTTGGATTTGTTAATGTTTATGCATTGCGAGTA
AATCTTAGTGTAGCTATGGTGGCAATGGTATCTAATAGGACAGCCAAATA
TGCAAATGGGACTGAGTATACTGTGGTTGAAAATATACCTTGGAAAGACT
TTATAACCTCGTTGCCAGTATGGGCAATCATTATTGCACACATGACCGAA
AACTGGGGATGGTACACATTATTGACACAACTTCCAACATATCTGAAAAG
CGTGCTGGATTTTAATCTACAAGCTGTAGATTGTTTGGTGTGATTTGGAG
TTTCTTTTGGTTTGCACTGGTGACAGAATCTCCTTGTGATCATCCGAAAA
TCTCTAAAGAAGAATTAGATTACATTCAAAACTCTTTGAAGGAAGATAAA
CCGGAAAAACAGGACCCTTTGCTGGGACAGTACTAGGAATGCCACTATCA
GGTGTTATTGCTAATTCCTTTGGATGGCCATGGGTCTTTTATACTTTTGG
GTGTAACATTCCCAAGCATTTATGCAATCTGGAGAAAATGGGCTCCACCT
TTAGAAAGAAGTAAACTTGCAACAATCTCATTTTCAGGATTTGTTCTTAG
TTCATTTTTCTATGGTTATATTATCACACAAATACCTGGTGGTTGGCTTG
CTACAAAATATGGTGGTAAAAACTTGTTTGGTTGTGGTGTCCTAATGACG
GCTCTTTTTACATTGATTACACCACCTGCAGCTAGATGTAATGTTTATTT
ACTGGTGGCCGTAAGAATGGCGGAAGGATTATTCGAGAGTCCAGAACTTG
ACTGGAGTCCAAAACTTCAAGATGTCTTTTGAAATGGATCGTGTTGAGAA
AGGGAAAGAGGAAGGTGAAAATTCTGATCTTTACTCTTATGATGCAAGTA
GTAATCACAAGGCCAATAATGATCGTCGAAAAGCAGACCTTTGTTGTTGT
GCATGTCTACCAAAACGTTACCTGGTCGCTATCATGGCTTTTTTTGGATT
TGTTAATGTTTATGCATTGCGAGTAAATCTTAGTGTAGCTATGGTGGCAA
TGGTATCTAATAGGACAGCCAAATATGCAAATGGGACTGAGTATACTGTG
GTTGAAAATATACCTTGGAAAGACTTTATAACCTCGTTGCCAGTATGGGC
AATCATTATTGCACACATGACCGAAAACTGGGGATGGTACACATTATTGA
CACAACTTCCAACATATCTGAAAAGCGTGCTGGATTTTAATCTACAAGCT
GTAGATTGTTTGGTGTGATTTGGAGTTTCTTTTGGTTTGCACTGGTGACA
GAATCTCCTTGTGATCATCCGAAAATCTCTAAAGAAGAATTAGATTACAT
TCAAAACTCTTTGAAGGAAGATAAACCGGAAAAACAGGACCCTTTGCTGG
GACAGTACTAGGAATGCCACTATCAGGTGTTATTGCTAATTCCTTTGGAT
GGCCATGGGTCTTTTATACTTTTGGGTGTAACATTCCCAAGCATTTATGC
AATCTGGAGAAAATGGGCTCCACCTTTAGAAAGAAGTAAACTTGCAACAA
TCTCATTTTCAGGATTTGTTCTTAGTTCATTTTTCTATGGTTATATTATC
ACACAAATACCTGGTGGTTGGCTTGCTACAAAATATGGTGGTAAAAACTT
GTTTGGTTGTGGTGTCCTAATGACGGCTCTTTTTACATTGATTACACCAC
CTGCAGCTAGATGTAATGTTTATTTACTGGTGGCCGTAAGAATGGCGGAA
GGATTATTCGAGAGTCCAGAACTTGACTGGAGTCCAAAACTTCAAGATGT
CTTTTGAAATGGATCGTGTTGAGAAAGGGAAAGAGGAAGGTGAAAATTCT
GATCTTTACTCTTATGATGCAAGTAGTAATCACAAGGCCAATAATGATCG
TCGAAAAGCAGACCTTTGTTGTTGTGCATGTCTACCAAAACGTTACCTGG
TCGCTATCATGGCTTTTTTTGGATTTGTTAATGTTTATGCATTGCGAGTA
AATCTTAGTGTAGCTATGGTGGCAATGGTATCTAATAGGACAGCCAAATA
TGCAAATGGGACTGAGTATACTGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037660	XLOC_037660	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059886-protein	TCONS_00059886-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_331	supercontig	scaffold_331:285217..290061 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.71174	8.70725	13.2655	13.6227	15.0227	11.7386	26.2241	29.4511	26.4338	27.6347	25.0975	20.3412	15.9177	12.5358	9.52911	12.9607	11.5978	15.5774	20.577	26.477	12.5969	14.3583	12.6311	17.6914	11.173	9.97767	13.5516	8.95612	13.0882	13.2387

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR027378	Nucleotide_channel_N
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

Blast

[Close]

BLAST of TCONS_00059886 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 6.232e-89
Identity = 146/303 (48.18%), Postives = 195/303 (64.36%), Query Frame = 1

Query:  178 RRKADLCCCACLPKRYLVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGT--------------EYTVSPELDWSPKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLITPPAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISFSGPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTESPCDHPKISKEELDYIQNSLKEDKPEKQVENIPWKDFITSLPVWAIIIAHMTENWGWYTLLTQLPTYLKSVLDFNLQ 1044
            R +A   CC+    RY +AI+AFFGF  VYALRVNLSVA+V MV + T    N T                    +  W  + QG++L SFFYGYIITQIPGG++A+K GGK L G G+L TA+ TL TP AA   V  L+ +R  EGL EGVTFP+++A+W  WAPPLERSKL +IS++G   GTV+ +PLSG+I     W +VFY FG  G+ W   W  LV+++P  H +IS  E +YI +SL+     ++  ++PW   + SLP+WAI++AH + NW +YTLLT LPTY+K +L FN+Q
Sbjct:   28 RAEAAPVCCSA---RYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQK--SVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQ 325

The following BLAST results are available for this feature:

BLAST of TCONS_00059886 vs. Swiss-Prot (Human)

BLAST of TCONS_00059886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S17A5	6.232e-89	48.18	Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2	[more]

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TCONS_00059886 (transcript) - C. hemisphaerica