TCONS_00059886-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059886-protein
Unique Name	TCONS_00059886-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	325

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059886-protein ID=TCONS_00059886-protein|Name=TCONS_00059886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MSFEMDRVEKGKEEGENSDLYSYDASSNHKANNDRRKADLCCCACLPKRY
LVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGTEYTVSPELDWS
PKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLITP
PAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISFS
GPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTESPCD
HPKISKEELDYIQNSLKEDKPEKQVENIPWKDFITSLPVWAIIIAHMTEN
WGWYTLLTQLPTYLKSVLDFNLQAV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037660	XLOC_037660	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059886	TCONS_00059886	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR027378	Nucleotide_channel_N
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 274..325 e-value: 7.8E-5 score: 21.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 58..324 e-value: 2.2E-46 score: 158.3
IPR027378	Cyclic nucleotide-regulated ion channel, N-terminal domain	GENE3D	1.20.120.540		coord: 55..184 e-value: 6.4E-29 score: 99.8 coord: 191..253 e-value: 0.0017 score: 17.8
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 51..325 score: 21.246
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 54..325 e-value: 3.22407E-29 score: 113.563
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 38..323

Blast

[Close]

BLAST of TCONS_00059886-protein vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 5.593e-91
Identity = 146/303 (48.18%), Postives = 195/303 (64.36%), Query Frame = 0

Query:   35 RRKADLCCCACLPKRYLVAIMAFFGFVNVYALRVNLSVAMVAMVSNRTAKYANGT--------------EYTVSPELDWSPKLQGFVLSSFFYGYIITQIPGGWLATKYGGKNLFGCGVLMTALFTLITPPAARCNVYLLVAVRMAEGLFEGVTFPSIYAIWRKWAPPLERSKLATISFSGPFAGTVLGMPLSGVIANSFGWPWVFYTFGLFGVIWSFFWFALVTESPCDHPKISKEELDYIQNSLKEDKPEKQVENIPWKDFITSLPVWAIIIAHMTENWGWYTLLTQLPTYLKSVLDFNLQ 323
            R +A   CC+    RY +AI+AFFGF  VYALRVNLSVA+V MV + T    N T                    +  W  + QG++L SFFYGYIITQIPGG++A+K GGK L G G+L TA+ TL TP AA   V  L+ +R  EGL EGVTFP+++A+W  WAPPLERSKL +IS++G   GTV+ +PLSG+I     W +VFY FG  G+ W   W  LV+++P  H +IS  E +YI +SL+     ++  ++PW   + SLP+WAI++AH + NW +YTLLT LPTY+K +L FN+Q
Sbjct:   28 RAEAAPVCCSA---RYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSGIICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILSSLRNQLSSQK--SVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQ 325

The following BLAST results are available for this feature:

BLAST of TCONS_00059886-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059886-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S17A5	5.593e-91	48.18	Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2	[more]

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TCONS_00059886-protein (polypeptide) - C. hemisphaerica